HEADER BLOOD CLOTTING 23-AUG-17 5OU9 TITLE CRYSTAL STRUCTURE OF GLYCOPROTEIN VI IN COMPLEX WITH COLLAGEN-PEPTIDE TITLE 2 (GPO)3 CAVEAT 5OU9 HYP D 15 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET GLYCOPROTEIN VI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GPVI,GLYCOPROTEIN 6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: (GPO)3; COMPND 9 CHAIN: C, D, E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GP6; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293-EBNA1-S; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS PLATELET, GLYCOPROTEIN, GPVI, COLLAGEN-BINDING, PLATELET ACTIVATION, KEYWDS 2 GPO3, CRP, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR L.J.FEITSMA,E.G.HUIZINGA REVDAT 3 17-JAN-24 5OU9 1 HETSYN REVDAT 2 29-JUL-20 5OU9 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 05-SEP-18 5OU9 0 JRNL AUTH L.J.FEITSMA,T.H.C.BRONDIJK,G.JARVIS,D.HAGEMANS,D.BIHAN, JRNL AUTH 2 N.JERAH,M.VERSTEEG,R.W.FARNDALE,E.G.HUIZINGA JRNL TITL STRUCTURAL INSIGHTS INTO COLLAGEN-BINDING BY PLATELET JRNL TITL 2 RECEPTOR GLYCOPROTEIN VI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1440 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.384 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3284 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3013 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4509 ; 1.564 ; 2.054 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7046 ; 1.157 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 7.283 ; 5.024 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;34.908 ;22.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;16.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.262 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3607 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 653 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 1.495 ; 4.180 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1644 ; 1.495 ; 4.177 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2049 ; 2.765 ; 6.250 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2050 ; 2.765 ; 6.253 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1639 ; 1.043 ; 4.173 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1640 ; 1.043 ; 4.175 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2458 ; 1.951 ; 6.247 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3211 ; 4.149 ;47.878 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3203 ; 4.105 ;47.818 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8690 13.7690 -24.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.5191 REMARK 3 T33: 0.0692 T12: -0.0730 REMARK 3 T13: 0.0074 T23: 0.1800 REMARK 3 L TENSOR REMARK 3 L11: 0.6242 L22: 3.2238 REMARK 3 L33: 2.1843 L12: 0.6831 REMARK 3 L13: -0.0123 L23: -2.2764 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: -0.1293 S13: -0.0233 REMARK 3 S21: 0.3046 S22: -0.0689 S23: -0.0085 REMARK 3 S31: -0.3289 S32: -0.0250 S33: -0.0247 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5650 6.7280 19.7520 REMARK 3 T TENSOR REMARK 3 T11: 0.3403 T22: 0.2003 REMARK 3 T33: 0.1435 T12: -0.0364 REMARK 3 T13: -0.0942 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.2238 L22: 1.6660 REMARK 3 L33: 4.2988 L12: 1.5053 REMARK 3 L13: 2.5510 L23: 1.7900 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: -0.1776 S13: 0.0089 REMARK 3 S21: -0.1111 S22: 0.0758 S23: -0.1660 REMARK 3 S31: -0.2807 S32: -0.4312 S33: -0.0156 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 21 REMARK 3 RESIDUE RANGE : D 1 D 21 REMARK 3 RESIDUE RANGE : E 1 E 21 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4690 -5.8100 -8.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.4807 REMARK 3 T33: 0.1909 T12: -0.0549 REMARK 3 T13: -0.0035 T23: 0.2207 REMARK 3 L TENSOR REMARK 3 L11: 3.2290 L22: 9.9266 REMARK 3 L33: 6.8938 L12: 3.3864 REMARK 3 L13: 2.4244 L23: 5.9992 REMARK 3 S TENSOR REMARK 3 S11: -0.1842 S12: 0.3473 S13: 0.0190 REMARK 3 S21: 0.3206 S22: 0.0749 S23: 0.4840 REMARK 3 S31: -0.0219 S32: -0.3584 S33: 0.1094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 1.0.7 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.30 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 79.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.97100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.0 REMARK 200 STARTING MODEL: 5OU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT-BUFFER PH 9.0 25% (W/V) REMARK 280 PEG1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.86000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.86000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.93000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.86000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 239.79000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.86000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.93000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.86000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 239.79000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 159.86000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 179 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 PRO B 4 REMARK 465 GLY B 174 REMARK 465 THR B 175 REMARK 465 SER B 176 REMARK 465 ALA B 177 REMARK 465 ALA B 178 REMARK 465 ALA B 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 21 -7.75 73.94 REMARK 500 ASP A 49 43.07 -97.76 REMARK 500 SER A 102 76.92 -68.92 REMARK 500 ASP A 126 -100.11 66.70 REMARK 500 ASP B 49 43.70 -94.39 REMARK 500 PRO B 136 45.95 -76.45 REMARK 500 PRO C 3 -175.72 -61.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OU7 RELATED DB: PDB REMARK 900 UNCOMPLEXED FORM OF GPVI REMARK 900 RELATED ID: 5OU8 RELATED DB: PDB REMARK 900 GPVI-(GPO)5 COMPLEX DBREF 5OU9 A 1 176 UNP Q9HCN6 GPVI_HUMAN 21 206 DBREF 5OU9 B 1 176 UNP Q9HCN6 GPVI_HUMAN 21 206 DBREF 5OU9 C 1 21 PDB 5OU9 5OU9 1 21 DBREF 5OU9 D 1 21 PDB 5OU9 5OU9 1 21 DBREF 5OU9 E 1 21 PDB 5OU9 5OU9 1 21 SEQADV 5OU9 GLY A -1 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 SER A 0 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 A UNP Q9HCN6 PRO 122 DELETION SEQADV 5OU9 A UNP Q9HCN6 ALA 123 DELETION SEQADV 5OU9 A UNP Q9HCN6 VAL 124 DELETION SEQADV 5OU9 A UNP Q9HCN6 SER 125 DELETION SEQADV 5OU9 A UNP Q9HCN6 PRO 151 DELETION SEQADV 5OU9 A UNP Q9HCN6 ALA 152 DELETION SEQADV 5OU9 A UNP Q9HCN6 PRO 153 DELETION SEQADV 5OU9 A UNP Q9HCN6 TYR 154 DELETION SEQADV 5OU9 A UNP Q9HCN6 LYS 155 DELETION SEQADV 5OU9 A UNP Q9HCN6 ASN 156 DELETION SEQADV 5OU9 ALA A 177 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 ALA A 178 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 ALA A 179 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 GLY B -1 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 SER B 0 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 B UNP Q9HCN6 PRO 122 DELETION SEQADV 5OU9 B UNP Q9HCN6 ALA 123 DELETION SEQADV 5OU9 B UNP Q9HCN6 VAL 124 DELETION SEQADV 5OU9 B UNP Q9HCN6 SER 125 DELETION SEQADV 5OU9 B UNP Q9HCN6 PRO 151 DELETION SEQADV 5OU9 B UNP Q9HCN6 ALA 152 DELETION SEQADV 5OU9 B UNP Q9HCN6 PRO 153 DELETION SEQADV 5OU9 B UNP Q9HCN6 TYR 154 DELETION SEQADV 5OU9 B UNP Q9HCN6 LYS 155 DELETION SEQADV 5OU9 B UNP Q9HCN6 ASN 156 DELETION SEQADV 5OU9 ALA B 177 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 ALA B 178 UNP Q9HCN6 EXPRESSION TAG SEQADV 5OU9 ALA B 179 UNP Q9HCN6 EXPRESSION TAG SEQRES 1 A 181 GLY SER GLN SER GLY PRO LEU PRO LYS PRO SER LEU GLN SEQRES 2 A 181 ALA LEU PRO SER SER LEU VAL PRO LEU GLU LYS PRO VAL SEQRES 3 A 181 THR LEU ARG CYS GLN GLY PRO PRO GLY VAL ASP LEU TYR SEQRES 4 A 181 ARG LEU GLU LYS LEU SER SER SER ARG TYR GLN ASP GLN SEQRES 5 A 181 ALA VAL LEU PHE ILE PRO ALA MET LYS ARG SER LEU ALA SEQRES 6 A 181 GLY ARG TYR ARG CYS SER TYR GLN ASN GLY SER LEU TRP SEQRES 7 A 181 SER LEU PRO SER ASP GLN LEU GLU LEU VAL ALA THR GLY SEQRES 8 A 181 VAL PHE ALA LYS PRO SER LEU SER ALA GLN PRO GLY SER SEQRES 9 A 181 GLY GLY ASP VAL THR LEU GLN CYS GLN THR ARG TYR GLY SEQRES 10 A 181 PHE ASP GLN PHE ALA LEU TYR LYS GLU GLY ASP PRO GLU SEQRES 11 A 181 ARG TRP TYR ARG ALA SER PHE PRO ILE ILE THR VAL THR SEQRES 12 A 181 ALA ALA HIS SER GLY THR TYR ARG CYS TYR SER PHE SER SEQRES 13 A 181 SER ARG ASP PRO TYR LEU TRP SER ALA PRO SER ASP PRO SEQRES 14 A 181 LEU GLU LEU VAL VAL THR GLY THR SER ALA ALA ALA SEQRES 1 B 181 GLY SER GLN SER GLY PRO LEU PRO LYS PRO SER LEU GLN SEQRES 2 B 181 ALA LEU PRO SER SER LEU VAL PRO LEU GLU LYS PRO VAL SEQRES 3 B 181 THR LEU ARG CYS GLN GLY PRO PRO GLY VAL ASP LEU TYR SEQRES 4 B 181 ARG LEU GLU LYS LEU SER SER SER ARG TYR GLN ASP GLN SEQRES 5 B 181 ALA VAL LEU PHE ILE PRO ALA MET LYS ARG SER LEU ALA SEQRES 6 B 181 GLY ARG TYR ARG CYS SER TYR GLN ASN GLY SER LEU TRP SEQRES 7 B 181 SER LEU PRO SER ASP GLN LEU GLU LEU VAL ALA THR GLY SEQRES 8 B 181 VAL PHE ALA LYS PRO SER LEU SER ALA GLN PRO GLY SER SEQRES 9 B 181 GLY GLY ASP VAL THR LEU GLN CYS GLN THR ARG TYR GLY SEQRES 10 B 181 PHE ASP GLN PHE ALA LEU TYR LYS GLU GLY ASP PRO GLU SEQRES 11 B 181 ARG TRP TYR ARG ALA SER PHE PRO ILE ILE THR VAL THR SEQRES 12 B 181 ALA ALA HIS SER GLY THR TYR ARG CYS TYR SER PHE SER SEQRES 13 B 181 SER ARG ASP PRO TYR LEU TRP SER ALA PRO SER ASP PRO SEQRES 14 B 181 LEU GLU LEU VAL VAL THR GLY THR SER ALA ALA ALA SEQRES 1 C 21 GLY PRO PRO GLY PRO PRO GLY PRO HYP GLY PRO HYP GLY SEQRES 2 C 21 PRO HYP GLY PRO PRO GLY PRO PRO SEQRES 1 D 21 GLY PRO PRO GLY PRO PRO GLY PRO HYP GLY PRO HYP GLY SEQRES 2 D 21 PRO HYP GLY PRO PRO GLY PRO PRO SEQRES 1 E 21 GLY PRO PRO GLY PRO PRO GLY PRO HYP GLY PRO HYP GLY SEQRES 2 E 21 PRO HYP GLY PRO PRO GLY PRO PRO HET HYP C 9 8 HET HYP C 12 8 HET HYP C 15 8 HET HYP D 9 8 HET HYP D 12 8 HET HYP D 15 8 HET HYP E 9 8 HET HYP E 12 8 HET HYP E 15 8 HET NAG A 201 14 HET PG4 A 202 13 HET CL B 201 1 HET NAG B 202 14 HET PG4 B 203 10 HETNAM HYP 4-HYDROXYPROLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN HYP HYDROXYPROLINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 HYP 9(C5 H9 N O3) FORMUL 6 NAG 2(C8 H15 N O6) FORMUL 7 PG4 2(C8 H18 O5) FORMUL 8 CL CL 1- FORMUL 11 HOH *41(H2 O) HELIX 1 AA1 LYS A 59 ALA A 63 5 5 HELIX 2 AA2 LYS B 59 ALA B 63 5 5 SHEET 1 AA1 3 SER A 9 LEU A 13 0 SHEET 2 AA1 3 VAL A 24 GLN A 29 -1 O THR A 25 N LEU A 13 SHEET 3 AA1 3 VAL A 52 ILE A 55 -1 O ILE A 55 N VAL A 24 SHEET 1 AA2 4 LEU A 17 PRO A 19 0 SHEET 2 AA2 4 LEU A 83 PHE A 91 1 O VAL A 86 N VAL A 18 SHEET 3 AA2 4 GLY A 64 ASN A 72 -1 N TYR A 66 O LEU A 83 SHEET 4 AA2 4 LEU A 75 TRP A 76 -1 O LEU A 75 N ASN A 72 SHEET 1 AA3 5 TYR A 47 GLN A 48 0 SHEET 2 AA3 5 LEU A 36 LYS A 41 -1 N LEU A 39 O GLN A 48 SHEET 3 AA3 5 GLY A 64 ASN A 72 -1 O ARG A 67 N GLU A 40 SHEET 4 AA3 5 LEU A 83 PHE A 91 -1 O LEU A 83 N TYR A 66 SHEET 5 AA3 5 LEU A 160 SER A 162 1 O TRP A 161 N ALA A 87 SHEET 1 AA4 3 SER A 95 GLY A 101 0 SHEET 2 AA4 3 ASP A 105 GLN A 111 -1 O GLN A 111 N SER A 95 SHEET 3 AA4 3 ILE A 137 VAL A 140 -1 O ILE A 138 N LEU A 108 SHEET 1 AA5 4 ARG A 129 ALA A 133 0 SHEET 2 AA5 4 GLN A 118 LYS A 123 -1 N LEU A 121 O TYR A 131 SHEET 3 AA5 4 GLY A 146 PHE A 153 -1 O TYR A 151 N ALA A 120 SHEET 4 AA5 4 LEU A 168 LEU A 170 -1 O LEU A 168 N TYR A 148 SHEET 1 AA6 3 SER B 9 LEU B 13 0 SHEET 2 AA6 3 VAL B 24 GLN B 29 -1 O GLN B 29 N SER B 9 SHEET 3 AA6 3 VAL B 52 ILE B 55 -1 O ILE B 55 N VAL B 24 SHEET 1 AA7 5 LEU B 17 PRO B 19 0 SHEET 2 AA7 5 LEU B 83 THR B 88 1 O VAL B 86 N VAL B 18 SHEET 3 AA7 5 GLY B 64 ASN B 72 -1 N TYR B 66 O LEU B 83 SHEET 4 AA7 5 LEU B 36 LYS B 41 -1 N ARG B 38 O SER B 69 SHEET 5 AA7 5 ARG B 46 GLN B 48 -1 O GLN B 48 N LEU B 39 SHEET 1 AA8 4 LEU B 17 PRO B 19 0 SHEET 2 AA8 4 LEU B 83 THR B 88 1 O VAL B 86 N VAL B 18 SHEET 3 AA8 4 GLY B 64 ASN B 72 -1 N TYR B 66 O LEU B 83 SHEET 4 AA8 4 LEU B 75 TRP B 76 -1 O LEU B 75 N ASN B 72 SHEET 1 AA9 3 SER B 95 PRO B 100 0 SHEET 2 AA9 3 ASP B 105 GLN B 111 -1 O THR B 107 N GLN B 99 SHEET 3 AA9 3 ILE B 137 THR B 141 -1 O ILE B 138 N LEU B 108 SHEET 1 AB1 4 ARG B 129 ALA B 133 0 SHEET 2 AB1 4 GLN B 118 LYS B 123 -1 N LEU B 121 O TYR B 131 SHEET 3 AB1 4 GLY B 146 SER B 154 -1 O TYR B 151 N ALA B 120 SHEET 4 AB1 4 ASP B 157 TRP B 161 -1 O ASP B 157 N SER B 154 SHEET 1 AB2 4 ARG B 129 ALA B 133 0 SHEET 2 AB2 4 GLN B 118 LYS B 123 -1 N LEU B 121 O TYR B 131 SHEET 3 AB2 4 GLY B 146 SER B 154 -1 O TYR B 151 N ALA B 120 SHEET 4 AB2 4 LEU B 168 LEU B 170 -1 O LEU B 170 N GLY B 146 SSBOND 1 CYS A 28 CYS A 68 1555 1555 2.05 SSBOND 2 CYS A 110 CYS A 150 1555 1555 2.06 SSBOND 3 CYS B 28 CYS B 68 1555 1555 2.06 SSBOND 4 CYS B 110 CYS B 150 1555 1555 2.10 LINK ND2 ASN A 72 C1 NAG A 201 1555 1555 1.44 LINK ND2 ASN B 72 C1 NAG B 202 1555 1555 1.45 LINK C PRO C 8 N HYP C 9 1555 1555 1.34 LINK C HYP C 9 N GLY C 10 1555 1555 1.32 LINK C PRO C 11 N HYP C 12 1555 1555 1.35 LINK C HYP C 12 N GLY C 13 1555 1555 1.35 LINK C PRO C 14 N HYP C 15 1555 1555 1.35 LINK C HYP C 15 N GLY C 16 1555 1555 1.34 LINK C PRO D 8 N HYP D 9 1555 1555 1.35 LINK C HYP D 9 N GLY D 10 1555 1555 1.34 LINK C PRO D 11 N HYP D 12 1555 1555 1.35 LINK C HYP D 12 N GLY D 13 1555 1555 1.32 LINK C PRO D 14 N HYP D 15 1555 1555 1.35 LINK C HYP D 15 N GLY D 16 1555 1555 1.34 LINK C PRO E 8 N HYP E 9 1555 1555 1.35 LINK C HYP E 9 N GLY E 10 1555 1555 1.34 LINK C PRO E 11 N HYP E 12 1555 1555 1.35 LINK C HYP E 12 N GLY E 13 1555 1555 1.33 LINK C PRO E 14 N HYP E 15 1555 1555 1.35 LINK C HYP E 15 N GLY E 16 1555 1555 1.34 CISPEP 1 LEU A 13 PRO A 14 0 4.42 CISPEP 2 LEU B 13 PRO B 14 0 8.03 CISPEP 3 ASP B 126 PRO B 127 0 3.27 CRYST1 59.720 59.720 319.720 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003128 0.00000