HEADER HYDROLASE 04-AUG-17 5ONT TITLE CRYSTAL STRUCTURE OF MYCOLICIBACTERIUM HASSIACUM GLUCOSYLGLYCERATE TITLE 2 HYDROLASE(MHGGH) E419A VARIANT IN COMPLEX WITH GLUCOSYLGLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM HASSIACUM (STRAIN DSM 44199 / CIP SOURCE 3 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_TAXID: 1122247; SOURCE 5 GENE: C731_0006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.B.CEREIJA,S.MACEDO-RIBEIRO,P.J.B.PEREIRA REVDAT 5 17-JAN-24 5ONT 1 HETSYN REVDAT 4 29-JUL-20 5ONT 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 31-JUL-19 5ONT 1 JRNL REVDAT 2 15-MAY-19 5ONT 1 TITLE JRNL REVDAT 1 29-AUG-18 5ONT 0 JRNL AUTH T.B.CEREIJA,S.ALARICO,E.C.LOURENCO,J.A.MANSO,M.R.VENTURA, JRNL AUTH 2 N.EMPADINHAS,S.MACEDO-RIBEIRO,P.J.B.PEREIRA JRNL TITL THE STRUCTURAL CHARACTERIZATION OF A GLUCOSYLGLYCERATE JRNL TITL 2 HYDROLASE PROVIDES INSIGHTS INTO THE MOLECULAR MECHANISM OF JRNL TITL 3 MYCOBACTERIAL RECOVERY FROM NITROGEN STARVATION. JRNL REF IUCRJ V. 6 572 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 31316802 JRNL DOI 10.1107/S2052252519005372 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 76246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 3909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3238 - 6.2199 1.00 2795 162 0.1672 0.1750 REMARK 3 2 6.2199 - 4.9389 1.00 2688 155 0.1550 0.1830 REMARK 3 3 4.9389 - 4.3151 1.00 2658 143 0.1193 0.1874 REMARK 3 4 4.3151 - 3.9208 1.00 2614 157 0.1151 0.1512 REMARK 3 5 3.9208 - 3.6399 1.00 2604 168 0.1289 0.1799 REMARK 3 6 3.6399 - 3.4254 1.00 2616 147 0.1375 0.1587 REMARK 3 7 3.4254 - 3.2539 1.00 2586 149 0.1464 0.1729 REMARK 3 8 3.2539 - 3.1123 0.98 2534 156 0.1438 0.1933 REMARK 3 9 3.1123 - 2.9925 0.93 2409 155 0.1521 0.1757 REMARK 3 10 2.9925 - 2.8893 0.97 2551 113 0.1562 0.1958 REMARK 3 11 2.8893 - 2.7989 0.99 2578 112 0.1480 0.2245 REMARK 3 12 2.7989 - 2.7190 1.00 2613 124 0.1570 0.2332 REMARK 3 13 2.7190 - 2.6474 0.99 2584 121 0.1512 0.2091 REMARK 3 14 2.6474 - 2.5828 0.99 2608 107 0.1579 0.2006 REMARK 3 15 2.5828 - 2.5241 0.99 2556 148 0.1616 0.2061 REMARK 3 16 2.5241 - 2.4704 0.98 2549 130 0.1650 0.2226 REMARK 3 17 2.4704 - 2.4210 0.99 2525 133 0.1645 0.2004 REMARK 3 18 2.4210 - 2.3753 0.99 2559 141 0.1717 0.2233 REMARK 3 19 2.3753 - 2.3329 1.00 2558 150 0.1746 0.2325 REMARK 3 20 2.3329 - 2.2933 1.00 2556 150 0.1820 0.2002 REMARK 3 21 2.2933 - 2.2563 1.00 2574 154 0.1919 0.2639 REMARK 3 22 2.2563 - 2.2216 1.00 2620 104 0.1945 0.2673 REMARK 3 23 2.2216 - 2.1889 1.00 2566 121 0.1979 0.2381 REMARK 3 24 2.1889 - 2.1581 1.00 2568 152 0.2136 0.2826 REMARK 3 25 2.1581 - 2.1289 1.00 2539 130 0.2266 0.2469 REMARK 3 26 2.1289 - 2.1013 1.00 2615 119 0.2403 0.3016 REMARK 3 27 2.1013 - 2.0750 1.00 2563 145 0.2452 0.2950 REMARK 3 28 2.0750 - 2.0500 1.00 2551 163 0.2644 0.3214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7610 REMARK 3 ANGLE : 1.011 10387 REMARK 3 CHIRALITY : 0.059 1067 REMARK 3 PLANARITY : 0.007 1361 REMARK 3 DIHEDRAL : 19.319 4471 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5113 9.0767 37.3997 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1553 REMARK 3 T33: 0.2131 T12: 0.0174 REMARK 3 T13: 0.0052 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.9627 L22: 5.7274 REMARK 3 L33: 4.9661 L12: 1.3537 REMARK 3 L13: -0.2269 L23: -2.6531 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.1231 S13: -0.0351 REMARK 3 S21: -0.2898 S22: 0.1541 S23: 0.2335 REMARK 3 S31: 0.0673 S32: -0.2011 S33: -0.0840 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6407 21.3823 28.1304 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.1869 REMARK 3 T33: 0.2128 T12: -0.0077 REMARK 3 T13: 0.0268 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.6563 L22: 3.2549 REMARK 3 L33: 6.6662 L12: -1.9202 REMARK 3 L13: 2.3347 L23: -2.3821 REMARK 3 S TENSOR REMARK 3 S11: 0.1612 S12: 0.3951 S13: 0.0097 REMARK 3 S21: -0.6270 S22: -0.1341 S23: 0.0090 REMARK 3 S31: -0.0032 S32: -0.0819 S33: -0.0658 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1338 30.1570 32.4584 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.2005 REMARK 3 T33: 0.2391 T12: -0.0049 REMARK 3 T13: -0.0148 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.2281 L22: 2.3927 REMARK 3 L33: 1.6844 L12: -1.2562 REMARK 3 L13: 0.3446 L23: -0.3243 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.2977 S13: 0.0809 REMARK 3 S21: -0.3606 S22: -0.0513 S23: 0.2637 REMARK 3 S31: -0.2480 S32: -0.1116 S33: 0.0058 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8738 25.8814 49.1548 REMARK 3 T TENSOR REMARK 3 T11: 0.2280 T22: 0.1913 REMARK 3 T33: 0.2493 T12: 0.0307 REMARK 3 T13: 0.0069 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.2507 L22: 1.6969 REMARK 3 L33: 1.1383 L12: 0.1323 REMARK 3 L13: -0.0910 L23: 0.0905 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0689 S13: 0.1382 REMARK 3 S21: 0.0567 S22: 0.0132 S23: 0.3078 REMARK 3 S31: -0.2101 S32: -0.1533 S33: -0.0255 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6218 6.5195 80.3654 REMARK 3 T TENSOR REMARK 3 T11: 0.2511 T22: 0.2881 REMARK 3 T33: 0.2152 T12: -0.0472 REMARK 3 T13: 0.0060 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.4623 L22: 5.6978 REMARK 3 L33: 5.5447 L12: 2.2764 REMARK 3 L13: 1.7370 L23: 1.9378 REMARK 3 S TENSOR REMARK 3 S11: 0.2792 S12: -0.2362 S13: -0.1590 REMARK 3 S21: 0.5843 S22: -0.1067 S23: -0.2259 REMARK 3 S31: 0.2840 S32: 0.2340 S33: -0.1580 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6585 24.3084 83.9707 REMARK 3 T TENSOR REMARK 3 T11: 0.4387 T22: 0.4243 REMARK 3 T33: 0.2456 T12: -0.1458 REMARK 3 T13: -0.0445 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.2822 L22: 1.5123 REMARK 3 L33: 1.9302 L12: 0.4841 REMARK 3 L13: -0.2149 L23: -0.1017 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: -0.5816 S13: 0.0022 REMARK 3 S21: 0.4581 S22: -0.2412 S23: -0.2150 REMARK 3 S31: -0.2296 S32: 0.3292 S33: 0.0536 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 321 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.2707 11.9473 66.8926 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.2581 REMARK 3 T33: 0.2296 T12: -0.0231 REMARK 3 T13: -0.0210 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.8222 L22: 3.0532 REMARK 3 L33: 1.7743 L12: 0.4103 REMARK 3 L13: -0.0770 L23: -0.8720 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: -0.0612 S13: -0.2374 REMARK 3 S21: 0.0213 S22: -0.1307 S23: -0.3689 REMARK 3 S31: 0.0511 S32: 0.2673 S33: 0.0679 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ONT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200005907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 45.313 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-BICINE PH 8.5, AMINO ACIDS, PEG REMARK 280 4000, GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.44900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.44900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.89800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASP A 206 REMARK 465 ASN A 207 REMARK 465 VAL A 208 REMARK 465 ILE A 209 REMARK 465 ILE A 210 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLN B 203 REMARK 465 ARG B 204 REMARK 465 ALA B 205 REMARK 465 ASP B 206 REMARK 465 ASN B 207 REMARK 465 VAL B 208 REMARK 465 ILE B 209 REMARK 465 ILE B 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 802 O HOH B 818 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 37 40.84 -84.44 REMARK 500 SER A 55 106.75 -167.64 REMARK 500 THR A 114 -165.96 -113.89 REMARK 500 MET A 181 69.31 -117.88 REMARK 500 GLN A 203 -91.92 -102.87 REMARK 500 PRO A 217 -65.73 -16.21 REMARK 500 SER A 218 112.99 102.76 REMARK 500 GLU A 319 72.26 -109.18 REMARK 500 PHE A 349 -110.05 -130.26 REMARK 500 GLU A 374 73.63 -104.63 REMARK 500 GLU A 374 73.73 -104.63 REMARK 500 TYR A 375 -107.59 51.57 REMARK 500 TYR A 375 -111.52 63.06 REMARK 500 LEU A 445 -98.20 -89.13 REMARK 500 PRO B 37 41.56 -81.75 REMARK 500 SER B 55 107.78 -170.02 REMARK 500 ASN B 83 -23.01 -34.81 REMARK 500 MET B 181 72.20 -115.86 REMARK 500 PRO B 217 175.01 -59.24 REMARK 500 GLU B 319 74.69 -110.87 REMARK 500 PHE B 349 -115.86 -141.17 REMARK 500 TYR B 375 -115.87 64.12 REMARK 500 LEU B 445 -105.87 -87.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 848 DISTANCE = 5.98 ANGSTROMS DBREF 5ONT A 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 DBREF 5ONT B 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 SEQADV 5ONT GLY A -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONT ALA A 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONT ALA A 419 UNP K5BDL0 GLU 419 ENGINEERED MUTATION SEQADV 5ONT GLY B -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONT ALA B 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5ONT ALA B 419 UNP K5BDL0 GLU 419 ENGINEERED MUTATION SEQRES 1 A 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 A 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 A 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 A 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 A 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 A 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 A 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 A 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 A 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 A 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 A 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 A 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 A 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 A 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 A 448 MET ASP ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 A 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 A 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 A 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 A 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 A 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 A 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 A 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 A 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 A 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 A 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 A 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 A 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 A 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 A 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 A 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 A 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 A 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 A 448 GLY SER PHE ALA ALA TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 A 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 A 448 VAL LEU ASP TRP LEU GLY SEQRES 1 B 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 B 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 B 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 B 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 B 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 B 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 B 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 B 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 B 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 B 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 B 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 B 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 B 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 B 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 B 448 MET ASP ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 B 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 B 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 B 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 B 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 B 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 B 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 B 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 B 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 B 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 B 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 B 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 B 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 B 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 B 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 B 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 B 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 B 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 B 448 GLY SER PHE ALA ALA TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 B 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 B 448 VAL LEU ASP TRP LEU GLY HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET A0K A 505 17 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET A0K B 505 17 HETNAM GOL GLYCEROL HETNAM A0K 1,3-DIHYDROXYPROPAN-2-YL ALPHA-D-GLUCOPYRANOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN A0K (2~{S},3~{R},4~{S},5~{S},6~{R})-2-[1,3-BIS(OXIDANYL) HETSYN 2 A0K PROPAN-2-YLOXY]-6-(HYDROXYMETHYL)OXANE-3,4,5-TRIOL; 1, HETSYN 3 A0K 3-DIHYDROXYPROPAN-2-YL ALPHA-D-GLUCOSIDE; 1,3- HETSYN 4 A0K DIHYDROXYPROPAN-2-YL D-GLUCOSIDE; 1,3-DIHYDROXYPROPAN- HETSYN 5 A0K 2-YL GLUCOSIDE FORMUL 3 GOL 8(C3 H8 O3) FORMUL 7 A0K 2(C9 H18 O8) FORMUL 13 HOH *566(H2 O) HELIX 1 AA1 THR A 8 ASN A 23 1 16 HELIX 2 AA2 SER A 41 ALA A 52 1 12 HELIX 3 AA3 SER A 55 SER A 68 1 14 HELIX 4 AA4 GLY A 91 ALA A 96 1 6 HELIX 5 AA5 ALA A 96 ALA A 101 1 6 HELIX 6 AA6 VAL A 118 ARG A 133 1 16 HELIX 7 AA7 GLY A 134 ARG A 163 1 30 HELIX 8 AA8 HIS A 175 GLY A 180 5 6 HELIX 9 AA9 SER A 184 ARG A 186 5 3 HELIX 10 AB1 TRP A 187 ASN A 193 1 7 HELIX 11 AB2 ASP A 212 ARG A 216 5 5 HELIX 12 AB3 SER A 218 VAL A 235 1 18 HELIX 13 AB4 ARG A 241 MET A 246 1 6 HELIX 14 AB5 VAL A 253 TYR A 273 1 21 HELIX 15 AB6 PRO A 276 THR A 297 1 22 HELIX 16 AB7 THR A 320 GLN A 323 5 4 HELIX 17 AB8 PHE A 324 GLY A 330 1 7 HELIX 18 AB9 PRO A 333 GLY A 346 1 14 HELIX 19 AC1 TRP A 381 GLY A 396 1 16 HELIX 20 AC2 TRP A 397 SER A 413 1 17 HELIX 21 AC3 GLN A 434 GLY A 446 1 13 HELIX 22 AC4 THR B 8 ASN B 23 1 16 HELIX 23 AC5 SER B 41 ALA B 52 1 12 HELIX 24 AC6 SER B 55 ALA B 69 1 15 HELIX 25 AC7 GLY B 91 ALA B 96 1 6 HELIX 26 AC8 ALA B 96 ALA B 101 1 6 HELIX 27 AC9 VAL B 118 GLY B 134 1 17 HELIX 28 AD1 GLY B 134 ARG B 163 1 30 HELIX 29 AD2 HIS B 175 GLY B 180 5 6 HELIX 30 AD3 SER B 184 ARG B 186 5 3 HELIX 31 AD4 TRP B 187 ALA B 192 1 6 HELIX 32 AD5 ASP B 212 ARG B 216 5 5 HELIX 33 AD6 SER B 218 VAL B 235 1 18 HELIX 34 AD7 ARG B 241 MET B 246 1 6 HELIX 35 AD8 VAL B 253 TYR B 273 1 21 HELIX 36 AD9 PRO B 276 THR B 297 1 22 HELIX 37 AE1 THR B 320 GLN B 323 5 4 HELIX 38 AE2 PHE B 324 GLY B 330 1 7 HELIX 39 AE3 PRO B 333 GLY B 346 1 14 HELIX 40 AE4 TRP B 381 GLY B 396 1 16 HELIX 41 AE5 TRP B 397 SER B 413 1 17 HELIX 42 AE6 GLN B 434 GLY B 446 1 13 SHEET 1 AA1 2 MET A 39 TRP A 40 0 SHEET 2 AA1 2 ILE A 79 VAL A 80 -1 O VAL A 80 N MET A 39 SHEET 1 AA2 4 ILE A 171 LEU A 173 0 SHEET 2 AA2 4 VAL A 250 ASP A 252 -1 O VAL A 250 N LEU A 173 SHEET 3 AA2 4 ASP A 307 ASP A 309 -1 O PHE A 308 N GLU A 251 SHEET 4 AA2 4 LYS A 314 LEU A 316 -1 O LEU A 316 N ASP A 307 SHEET 1 AA3 2 TYR A 420 TYR A 421 0 SHEET 2 AA3 2 PRO A 428 LEU A 429 -1 O LEU A 429 N TYR A 420 SHEET 1 AA4 2 MET B 39 TRP B 40 0 SHEET 2 AA4 2 ILE B 79 VAL B 80 -1 O VAL B 80 N MET B 39 SHEET 1 AA5 4 ILE B 171 LEU B 173 0 SHEET 2 AA5 4 VAL B 250 ASP B 252 -1 O VAL B 250 N LEU B 173 SHEET 3 AA5 4 ASP B 307 ASP B 309 -1 O PHE B 308 N GLU B 251 SHEET 4 AA5 4 LYS B 314 LEU B 316 -1 O LEU B 316 N ASP B 307 SHEET 1 AA6 2 TYR B 420 TYR B 421 0 SHEET 2 AA6 2 PRO B 428 LEU B 429 -1 O LEU B 429 N TYR B 420 CISPEP 1 PHE A 89 PRO A 90 0 5.57 CISPEP 2 PHE B 89 PRO B 90 0 -0.27 CRYST1 86.898 158.760 87.720 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011400 0.00000