HEADER CELL ADHESION 22-JUL-16 5LKN TITLE NMR SOLUTION STRUCTURE OF HUMAN FNIII DOMAIN 2 OF NCAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NCAM-1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DETAILS ABOUT THE SEQUENCE RESIDUE AT POSITION 595 IS COMPND 7 METHIONINE AND WAS ADDED FOR THE BEGINNING OF TRANSLATION RESIDUES COMPND 8 692-697 ON C-TERMINAL REPRESENTS SIX HISTIDINE RESIDUES WHICH WERE COMPND 9 USED AS HIS-TAG FOR PROTEIN PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCAM1, NCAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAZMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS FIBRONECTIN TYPE III DOMAIN, PROTEIN INTERACTIONS, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR U.SLAPSAK,G.SALZANO,L.AMIN,R.N.N.ABSKHARON,G.ILC,B.ZUPANCIC,I.BILJAN, AUTHOR 2 J.PLAVEC,G.GIACHIN,G.LEGNAME REVDAT 5 14-JUN-23 5LKN 1 REMARK REVDAT 4 08-MAY-19 5LKN 1 REMARK REVDAT 3 26-OCT-16 5LKN 1 JRNL REVDAT 2 21-SEP-16 5LKN 1 JRNL REVDAT 1 14-SEP-16 5LKN 0 JRNL AUTH U.SLAPSAK,G.SALZANO,L.AMIN,R.N.ABSKHARON,G.ILC,B.ZUPANCIC, JRNL AUTH 2 I.BILJAN,J.PLAVEC,G.GIACHIN,G.LEGNAME JRNL TITL THE N TERMINUS OF THE PRION PROTEIN MEDIATES FUNCTIONAL JRNL TITL 2 INTERACTIONS WITH THE NEURONAL CELL ADHESION MOLECULE (NCAM) JRNL TITL 3 FIBRONECTIN DOMAIN. JRNL REF J.BIOL.CHEM. V. 291 21857 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27535221 JRNL DOI 10.1074/JBC.M116.743435 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : YASARA REMARK 3 AUTHORS : ELMAR KRIEGER AND GERT VRIEND REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 5LKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000889. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.45 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-99% 13C; U-99% 15N] REMARK 210 "FIBRONECTIN TYPE III DOMAIN 2, REMARK 210 20 MM TBS, 150 MM SODIUM REMARK 210 CHLORIDE, 10 % [U-2H] D2O, 90 % REMARK 210 H2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D CC(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE, CARA V1.8.42, REMARK 210 SPARKY, TALOS, CYANA, CING, PSVS, REMARK 210 PROCHECK / PROCHECK-NMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 ARG A 690 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A 637 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 GLN A 678 1.98 -66.50 REMARK 500 4 GLN A 678 1.72 -67.36 REMARK 500 4 HIS A 694 35.27 -76.57 REMARK 500 5 HIS A 692 -16.58 65.81 REMARK 500 6 GLN A 596 -63.70 -138.08 REMARK 500 7 SER A 653 22.73 -73.52 REMARK 500 7 GLN A 678 2.05 -66.12 REMARK 500 8 ASN A 615 17.69 55.73 REMARK 500 11 GLN A 678 2.30 -69.32 REMARK 500 13 ASN A 615 18.79 53.36 REMARK 500 13 TRP A 645 99.83 -64.58 REMARK 500 13 GLN A 678 1.92 -65.10 REMARK 500 13 HIS A 692 18.64 56.41 REMARK 500 14 PRO A 647 -70.11 -65.79 REMARK 500 14 HIS A 696 69.31 -117.37 REMARK 500 15 GLN A 678 2.19 -65.65 REMARK 500 17 PRO A 647 -73.81 -60.87 REMARK 500 17 GLN A 678 1.97 -67.57 REMARK 500 18 TRP A 645 96.99 -69.25 REMARK 500 18 SER A 653 7.32 -65.70 REMARK 500 20 HIS A 692 -9.06 63.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34026 RELATED DB: BMRB DBREF 5LKN A 600 691 UNP P13591 NCAM1_HUMAN 601 692 SEQADV 5LKN MET A 595 UNP P13591 EXPRESSION TAG SEQADV 5LKN GLN A 596 UNP P13591 EXPRESSION TAG SEQADV 5LKN PRO A 597 UNP P13591 EXPRESSION TAG SEQADV 5LKN VAL A 598 UNP P13591 EXPRESSION TAG SEQADV 5LKN ARG A 599 UNP P13591 EXPRESSION TAG SEQADV 5LKN HIS A 692 UNP P13591 EXPRESSION TAG SEQADV 5LKN HIS A 693 UNP P13591 EXPRESSION TAG SEQADV 5LKN HIS A 694 UNP P13591 EXPRESSION TAG SEQADV 5LKN HIS A 695 UNP P13591 EXPRESSION TAG SEQADV 5LKN HIS A 696 UNP P13591 EXPRESSION TAG SEQADV 5LKN HIS A 697 UNP P13591 EXPRESSION TAG SEQRES 1 A 103 MET GLN PRO VAL ARG GLU PRO SER ALA PRO LYS LEU GLU SEQRES 2 A 103 GLY GLN MET GLY GLU ASP GLY ASN SER ILE LYS VAL ASN SEQRES 3 A 103 LEU ILE LYS GLN ASP ASP GLY GLY SER PRO ILE ARG HIS SEQRES 4 A 103 TYR LEU VAL ARG TYR ARG ALA LEU SER SER GLU TRP LYS SEQRES 5 A 103 PRO GLU ILE ARG LEU PRO SER GLY SER ASP HIS VAL MET SEQRES 6 A 103 LEU LYS SER LEU ASP TRP ASN ALA GLU TYR GLU VAL TYR SEQRES 7 A 103 VAL VAL ALA GLU ASN GLN GLN GLY LYS SER LYS ALA ALA SEQRES 8 A 103 HIS PHE VAL PHE ARG THR HIS HIS HIS HIS HIS HIS SHEET 1 AA1 2 SER A 616 ASN A 620 0 SHEET 2 AA1 2 HIS A 657 LYS A 661 -1 O VAL A 658 N VAL A 619 SHEET 1 AA2 4 LYS A 646 PRO A 652 0 SHEET 2 AA2 4 ILE A 631 ALA A 640 -1 N TYR A 638 O LYS A 646 SHEET 3 AA2 4 TYR A 669 ASN A 677 -1 O TYR A 672 N ARG A 637 SHEET 4 AA2 4 ALA A 685 PHE A 689 -1 O PHE A 687 N VAL A 671 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20