HEADER PROTEIN BINDING 18-JAN-16 5HNS TITLE STRUCTURE OF GLYCOSYLATED NPC1 LUMINAL DOMAIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIEMANN-PICK C1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN C, UNP RESIDUES 387-618; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPC1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY KEYWDS NIEMANN-PICK DISEASE TYPE C, NPC1, NPC2, CHOLESTEROL TRANSPORT, EBOLA KEYWDS 2 VIRUS RECEPTOR, EBOLA VIRUS SUSCEPTIBILITY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,J.REN,K.HARLOS,D.I.STUART REVDAT 5 29-JUL-20 5HNS 1 COMPND SOURCE REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 16-OCT-19 5HNS 1 REMARK REVDAT 3 16-MAR-16 5HNS 1 JRNL REVDAT 2 02-MAR-16 5HNS 1 JRNL REVDAT 1 10-FEB-16 5HNS 0 JRNL AUTH Y.ZHAO,J.REN,K.HARLOS,D.I.STUART JRNL TITL STRUCTURE OF GLYCOSYLATED NPC1 LUMINAL DOMAIN C REVEALS JRNL TITL 2 INSIGHTS INTO NPC2 AND EBOLA VIRUS INTERACTIONS. JRNL REF FEBS LETT. V. 590 605 2016 JRNL REFN ISSN 0014-5793 JRNL PMID 26846330 JRNL DOI 10.1002/1873-3468.12089 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1385 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 316 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -2.19000 REMARK 3 B33 (A**2) : 1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.336 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.463 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4040 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3536 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5559 ; 1.519 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8202 ; 1.100 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 6.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;38.245 ;25.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;14.615 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.237 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 655 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4462 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 936 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1768 ; 2.201 ; 5.732 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1763 ; 2.192 ; 5.720 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2205 ; 3.965 ; 8.571 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2206 ; 3.964 ; 8.574 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2272 ; 2.390 ; 6.798 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2268 ; 2.387 ; 6.792 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3351 ; 4.170 ;10.057 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4159 ; 7.350 ;49.759 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4148 ; 7.339 ;49.723 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 392 605 B 392 605 24186 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 392 A 606 REMARK 3 ORIGIN FOR THE GROUP (A): 76.6654 21.7124 88.3181 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.1541 REMARK 3 T33: 0.1337 T12: 0.0308 REMARK 3 T13: 0.0103 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.5182 L22: 1.3117 REMARK 3 L33: 0.7355 L12: -0.0831 REMARK 3 L13: -0.6276 L23: -0.0244 REMARK 3 S TENSOR REMARK 3 S11: -0.2170 S12: -0.2259 S13: -0.0642 REMARK 3 S21: -0.0377 S22: 0.3960 S23: -0.1361 REMARK 3 S31: 0.1392 S32: 0.1099 S33: -0.1790 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 391 B 606 REMARK 3 ORIGIN FOR THE GROUP (A): 58.7347 43.2528 86.3575 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.0532 REMARK 3 T33: 0.0409 T12: 0.0262 REMARK 3 T13: -0.0144 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.1846 L22: 1.9283 REMARK 3 L33: 0.4593 L12: -0.4201 REMARK 3 L13: 0.0647 L23: 0.1469 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: -0.2282 S13: 0.0744 REMARK 3 S21: -0.1970 S22: 0.1266 S23: 0.0713 REMARK 3 S31: -0.1327 S32: -0.0533 S33: -0.0735 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0675 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28062 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL MONO-ETHYL REMARK 280 ETHER 2000 AND 0.1 M POTASSIUM THIOCYANATE, PH 7.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.94500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.95500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.94500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.95500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.70000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.94500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.95500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.70000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.94500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.95500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 384 REMARK 465 THR A 385 REMARK 465 GLY A 386 REMARK 465 GLN A 387 REMARK 465 ALA A 388 REMARK 465 ARG A 389 REMARK 465 LEU A 390 REMARK 465 GLU A 391 REMARK 465 ARG A 607 REMARK 465 SER A 608 REMARK 465 ILE A 609 REMARK 465 GLU A 610 REMARK 465 ASP A 611 REMARK 465 GLU A 612 REMARK 465 LEU A 613 REMARK 465 ASN A 614 REMARK 465 ARG A 615 REMARK 465 GLU A 616 REMARK 465 SER A 617 REMARK 465 ASP A 618 REMARK 465 THR A 619 REMARK 465 GLY A 620 REMARK 465 THR A 621 REMARK 465 LEU A 622 REMARK 465 GLU A 623 REMARK 465 VAL A 624 REMARK 465 LEU A 625 REMARK 465 PHE A 626 REMARK 465 GLN A 627 REMARK 465 GLU B 384 REMARK 465 THR B 385 REMARK 465 GLY B 386 REMARK 465 GLN B 387 REMARK 465 ALA B 388 REMARK 465 ARG B 389 REMARK 465 LEU B 390 REMARK 465 ARG B 607 REMARK 465 SER B 608 REMARK 465 ILE B 609 REMARK 465 GLU B 610 REMARK 465 ASP B 611 REMARK 465 GLU B 612 REMARK 465 LEU B 613 REMARK 465 ASN B 614 REMARK 465 ARG B 615 REMARK 465 GLU B 616 REMARK 465 SER B 617 REMARK 465 ASP B 618 REMARK 465 THR B 619 REMARK 465 GLY B 620 REMARK 465 THR B 621 REMARK 465 LEU B 622 REMARK 465 GLU B 623 REMARK 465 VAL B 624 REMARK 465 LEU B 625 REMARK 465 PHE B 626 REMARK 465 GLN B 627 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 557 C2 NAG D 1 2.11 REMARK 500 ND2 ASN B 598 O5 NAG J 1 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 398 -69.27 64.59 REMARK 500 PHE A 399 64.38 -162.07 REMARK 500 ASP A 458 -127.77 53.81 REMARK 500 TYR A 475 37.85 -141.30 REMARK 500 ASN A 476 145.86 -9.88 REMARK 500 THR A 477 -144.92 -169.71 REMARK 500 PHE A 503 -33.66 -137.44 REMARK 500 SER A 527 -174.88 -66.79 REMARK 500 ASP A 552 -123.06 44.67 REMARK 500 LYS B 392 -57.89 -133.89 REMARK 500 ASP B 458 -127.67 53.41 REMARK 500 TYR B 475 47.65 -143.78 REMARK 500 TYR B 475 -151.29 -107.50 REMARK 500 THR B 477 -154.45 179.80 REMARK 500 SER B 527 -174.37 -67.48 REMARK 500 ASP B 552 -123.64 44.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 399 GLY B 400 149.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 5HNS A 387 618 UNP O15118 NPC1_HUMAN 387 618 DBREF 5HNS B 387 618 UNP O15118 NPC1_HUMAN 387 618 SEQADV 5HNS GLU A 384 UNP O15118 EXPRESSION TAG SEQADV 5HNS THR A 385 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLY A 386 UNP O15118 EXPRESSION TAG SEQADV 5HNS THR A 619 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLY A 620 UNP O15118 EXPRESSION TAG SEQADV 5HNS THR A 621 UNP O15118 EXPRESSION TAG SEQADV 5HNS LEU A 622 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLU A 623 UNP O15118 EXPRESSION TAG SEQADV 5HNS VAL A 624 UNP O15118 EXPRESSION TAG SEQADV 5HNS LEU A 625 UNP O15118 EXPRESSION TAG SEQADV 5HNS PHE A 626 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLN A 627 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLU B 384 UNP O15118 EXPRESSION TAG SEQADV 5HNS THR B 385 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLY B 386 UNP O15118 EXPRESSION TAG SEQADV 5HNS THR B 619 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLY B 620 UNP O15118 EXPRESSION TAG SEQADV 5HNS THR B 621 UNP O15118 EXPRESSION TAG SEQADV 5HNS LEU B 622 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLU B 623 UNP O15118 EXPRESSION TAG SEQADV 5HNS VAL B 624 UNP O15118 EXPRESSION TAG SEQADV 5HNS LEU B 625 UNP O15118 EXPRESSION TAG SEQADV 5HNS PHE B 626 UNP O15118 EXPRESSION TAG SEQADV 5HNS GLN B 627 UNP O15118 EXPRESSION TAG SEQRES 1 A 244 GLU THR GLY GLN ALA ARG LEU GLU LYS GLU TYR PHE ASP SEQRES 2 A 244 GLN HIS PHE GLY PRO PHE PHE ARG THR GLU GLN LEU ILE SEQRES 3 A 244 ILE ARG ALA PRO LEU THR ASP LYS HIS ILE TYR GLN PRO SEQRES 4 A 244 TYR PRO SER GLY ALA ASP VAL PRO PHE GLY PRO PRO LEU SEQRES 5 A 244 ASP ILE GLN ILE LEU HIS GLN VAL LEU ASP LEU GLN ILE SEQRES 6 A 244 ALA ILE GLU ASN ILE THR ALA SER TYR ASP ASN GLU THR SEQRES 7 A 244 VAL THR LEU GLN ASP ILE CYS LEU ALA PRO LEU SER PRO SEQRES 8 A 244 TYR ASN THR ASN CYS THR ILE LEU SER VAL LEU ASN TYR SEQRES 9 A 244 PHE GLN ASN SER HIS SER VAL LEU ASP HIS LYS LYS GLY SEQRES 10 A 244 ASP ASP PHE PHE VAL TYR ALA ASP TYR HIS THR HIS PHE SEQRES 11 A 244 LEU TYR CYS VAL ARG ALA PRO ALA SER LEU ASN ASP THR SEQRES 12 A 244 SER LEU LEU HIS ASP PRO CYS LEU GLY THR PHE GLY GLY SEQRES 13 A 244 PRO VAL PHE PRO TRP LEU VAL LEU GLY GLY TYR ASP ASP SEQRES 14 A 244 GLN ASN TYR ASN ASN ALA THR ALA LEU VAL ILE THR PHE SEQRES 15 A 244 PRO VAL ASN ASN TYR TYR ASN ASP THR GLU LYS LEU GLN SEQRES 16 A 244 ARG ALA GLN ALA TRP GLU LYS GLU PHE ILE ASN PHE VAL SEQRES 17 A 244 LYS ASN TYR LYS ASN PRO ASN LEU THR ILE SER PHE THR SEQRES 18 A 244 ALA GLU ARG SER ILE GLU ASP GLU LEU ASN ARG GLU SER SEQRES 19 A 244 ASP THR GLY THR LEU GLU VAL LEU PHE GLN SEQRES 1 B 244 GLU THR GLY GLN ALA ARG LEU GLU LYS GLU TYR PHE ASP SEQRES 2 B 244 GLN HIS PHE GLY PRO PHE PHE ARG THR GLU GLN LEU ILE SEQRES 3 B 244 ILE ARG ALA PRO LEU THR ASP LYS HIS ILE TYR GLN PRO SEQRES 4 B 244 TYR PRO SER GLY ALA ASP VAL PRO PHE GLY PRO PRO LEU SEQRES 5 B 244 ASP ILE GLN ILE LEU HIS GLN VAL LEU ASP LEU GLN ILE SEQRES 6 B 244 ALA ILE GLU ASN ILE THR ALA SER TYR ASP ASN GLU THR SEQRES 7 B 244 VAL THR LEU GLN ASP ILE CYS LEU ALA PRO LEU SER PRO SEQRES 8 B 244 TYR ASN THR ASN CYS THR ILE LEU SER VAL LEU ASN TYR SEQRES 9 B 244 PHE GLN ASN SER HIS SER VAL LEU ASP HIS LYS LYS GLY SEQRES 10 B 244 ASP ASP PHE PHE VAL TYR ALA ASP TYR HIS THR HIS PHE SEQRES 11 B 244 LEU TYR CYS VAL ARG ALA PRO ALA SER LEU ASN ASP THR SEQRES 12 B 244 SER LEU LEU HIS ASP PRO CYS LEU GLY THR PHE GLY GLY SEQRES 13 B 244 PRO VAL PHE PRO TRP LEU VAL LEU GLY GLY TYR ASP ASP SEQRES 14 B 244 GLN ASN TYR ASN ASN ALA THR ALA LEU VAL ILE THR PHE SEQRES 15 B 244 PRO VAL ASN ASN TYR TYR ASN ASP THR GLU LYS LEU GLN SEQRES 16 B 244 ARG ALA GLN ALA TRP GLU LYS GLU PHE ILE ASN PHE VAL SEQRES 17 B 244 LYS ASN TYR LYS ASN PRO ASN LEU THR ILE SER PHE THR SEQRES 18 B 244 ALA GLU ARG SER ILE GLU ASP GLU LEU ASN ARG GLU SER SEQRES 19 B 244 ASP THR GLY THR LEU GLU VAL LEU PHE GLN HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET BMA I 3 11 HET MAN I 4 11 HET MAN I 5 11 HET NAG J 1 14 HET NAG J 2 14 HET BMA J 3 11 HET NAG A 707 14 HET SCN A 712 3 HET SCN A 713 3 HET SCN B 713 3 HET SCN B 714 3 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SCN THIOCYANATE ION FORMUL 3 NAG 17(C8 H15 N O6) FORMUL 4 BMA 3(C6 H12 O6) FORMUL 4 MAN 3(C6 H12 O6) FORMUL 12 SCN 4(C N S 1-) FORMUL 16 HOH *44(H2 O) HELIX 1 AA1 GLY A 432 LEU A 435 5 4 HELIX 2 AA2 ASP A 436 ASN A 452 1 17 HELIX 3 AA3 LEU A 464 CYS A 468 1 5 HELIX 4 AA4 SER A 483 GLN A 489 5 7 HELIX 5 AA5 SER A 491 HIS A 497 1 7 HELIX 6 AA6 ASP A 508 VAL A 517 1 10 HELIX 7 AA7 PHE A 542 VAL A 546 1 5 HELIX 8 AA8 ASN A 554 ALA A 558 5 5 HELIX 9 AA9 ASP A 573 TYR A 594 1 22 HELIX 10 AB1 TYR B 394 PHE B 399 1 6 HELIX 11 AB2 GLY B 432 LEU B 435 5 4 HELIX 12 AB3 ASP B 436 ASN B 452 1 17 HELIX 13 AB4 LEU B 464 CYS B 468 1 5 HELIX 14 AB5 SER B 483 GLN B 489 5 7 HELIX 15 AB6 SER B 491 HIS B 497 1 7 HELIX 16 AB7 ASP B 508 VAL B 517 1 10 HELIX 17 AB8 PHE B 542 VAL B 546 1 5 HELIX 18 AB9 ASN B 554 ALA B 558 5 5 HELIX 19 AC1 ASP B 573 TYR B 594 1 22 SHEET 1 AA1 4 LEU A 547 GLY A 548 0 SHEET 2 AA1 4 ALA A 560 ASN A 568 -1 O ALA A 560 N GLY A 548 SHEET 3 AA1 4 PHE A 403 ARG A 411 -1 N ARG A 404 O VAL A 567 SHEET 4 AA1 4 THR A 600 PHE A 603 -1 O SER A 602 N ILE A 409 SHEET 1 AA2 2 HIS A 418 TYR A 420 0 SHEET 2 AA2 2 VAL A 429 PHE A 431 -1 O PHE A 431 N HIS A 418 SHEET 1 AA3 2 THR A 454 TYR A 457 0 SHEET 2 AA3 2 GLU A 460 THR A 463 -1 O VAL A 462 N ALA A 455 SHEET 1 AA4 2 LYS A 499 GLY A 500 0 SHEET 2 AA4 2 VAL A 505 ALA A 507 -1 O TYR A 506 N LYS A 499 SHEET 1 AA5 4 LEU B 547 GLY B 548 0 SHEET 2 AA5 4 ALA B 560 ASN B 568 -1 O ALA B 560 N GLY B 548 SHEET 3 AA5 4 PHE B 403 ARG B 411 -1 N ARG B 404 O VAL B 567 SHEET 4 AA5 4 THR B 600 PHE B 603 -1 O SER B 602 N ILE B 409 SHEET 1 AA6 2 HIS B 418 TYR B 420 0 SHEET 2 AA6 2 VAL B 429 PHE B 431 -1 O PHE B 431 N HIS B 418 SHEET 1 AA7 2 THR B 454 TYR B 457 0 SHEET 2 AA7 2 GLU B 460 THR B 463 -1 O VAL B 462 N ALA B 455 SHEET 1 AA8 2 LYS B 499 GLY B 500 0 SHEET 2 AA8 2 VAL B 505 ALA B 507 -1 O TYR B 506 N LYS B 499 SSBOND 1 CYS A 468 CYS A 479 1555 1555 2.07 SSBOND 2 CYS A 516 CYS A 533 1555 1555 2.07 SSBOND 3 CYS B 468 CYS B 479 1555 1555 2.09 SSBOND 4 CYS B 516 CYS B 533 1555 1555 2.07 LINK ND2AASN A 478 C1 NAG F 1 1555 1555 1.45 LINK ND2BASN A 478 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 524 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 557 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 572 C1 NAG A 707 1555 1555 1.46 LINK ND2 ASN A 598 C1 NAG E 1 1555 1555 1.45 LINK ND2AASN B 478 C1 NAG G 1 1555 1555 1.44 LINK ND2BASN B 478 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 524 C1 NAG H 1 1555 1555 1.45 LINK ND2 ASN B 557 C1 NAG I 1 1555 1555 1.43 LINK ND2 ASN B 598 C1 NAG J 1 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.46 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.43 LINK O4 NAG I 2 C1 BMA I 3 1555 1555 1.44 LINK O3 BMA I 3 C1 MAN I 4 1555 1555 1.44 LINK O6 BMA I 3 C1 MAN I 5 1555 1555 1.45 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.43 LINK O4 NAG J 2 C1 BMA J 3 1555 1555 1.46 CISPEP 1 TYR A 423 PRO A 424 0 -2.89 CISPEP 2 TYR B 423 PRO B 424 0 -2.42 CRYST1 87.890 115.910 147.400 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006784 0.00000