HEADER PROTEIN TRANSPORT 13-OCT-15 5FJX TITLE YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN COMPLEXED WITH GCS1 WXXF PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COATOMER SUBUNIT DELTA; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: MU-HOMOLOGY DOMAIN, RESIDUES 3282-546; COMPND 5 SYNONYM: DELTA-COAT PROTEIN, DELTA-COP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN GCS1; COMPND 10 CHAIN: D, E; COMPND 11 FRAGMENT: RESIDUES 345-352; COMPND 12 SYNONYM: ARF GAP GCS1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 10 ORGANISM_TAXID: 4932; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TRANSPORT, COP-I, VESICLE COAT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.J.SUCKLING,P.R.EVANS,D.J.OWEN REVDAT 3 10-JAN-24 5FJX 1 LINK REVDAT 2 02-DEC-15 5FJX 1 JRNL REVDAT 1 11-NOV-15 5FJX 0 JRNL AUTH R.J.SUCKLING,P.P.POON,S.M.TRAVIS,I.V.MAJOUL,F.M.HUGHSON, JRNL AUTH 2 P.R.EVANS,R.DUDEN,D.J.OWEN JRNL TITL STRUCTURAL BASIS FOR THE BINDING OF TRYPTOPHAN-BASED MOTIFS JRNL TITL 2 BY DELTA-COP. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 14242 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 26578768 JRNL DOI 10.1073/PNAS.1506186112 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1745 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2297 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.520 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.263 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.984 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6371 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6026 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8656 ; 1.616 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13978 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 806 ; 7.473 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;38.236 ;26.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1079 ;16.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1017 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7188 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1308 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3197 ; 3.989 ; 5.805 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3196 ; 3.983 ; 5.804 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3991 ; 6.243 ; 8.695 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3174 ; 4.032 ; 6.175 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5FJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1290065280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 99.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5FJW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.5, 0.2M MGCL2, 30% REMARK 280 PEG-4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.38250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.32000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.42750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.32000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.38250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.42750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 277 REMARK 465 PRO A 278 REMARK 465 LEU A 279 REMARK 465 GLY A 280 REMARK 465 SER A 281 REMARK 465 GLU A 282 REMARK 465 GLU A 283 REMARK 465 ASP A 284 REMARK 465 GLY B 277 REMARK 465 PRO B 278 REMARK 465 LEU B 279 REMARK 465 GLY B 280 REMARK 465 SER B 281 REMARK 465 GLU B 282 REMARK 465 GLU B 283 REMARK 465 ASP B 284 REMARK 465 GLY C 277 REMARK 465 PRO C 278 REMARK 465 LEU C 279 REMARK 465 GLY C 280 REMARK 465 SER C 281 REMARK 465 GLU C 282 REMARK 465 GLU C 283 REMARK 465 ASP C 284 REMARK 465 ASP D 1 REMARK 465 GLU D 2 REMARK 465 ASP E 1 REMARK 465 GLU E 2 REMARK 465 ASP E 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 544 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 436 35.31 -81.84 REMARK 500 ALA A 455 133.55 -32.47 REMARK 500 ASN A 476 42.48 30.52 REMARK 500 ASP A 506 133.05 177.84 REMARK 500 ASP A 525 99.20 -166.54 REMARK 500 ASP A 541 -92.82 -133.67 REMARK 500 HIS B 329 54.80 -100.18 REMARK 500 GLN B 346 65.16 32.93 REMARK 500 ALA B 375 43.07 -93.67 REMARK 500 GLU B 409 -48.57 -138.01 REMARK 500 ALA B 455 99.30 -32.15 REMARK 500 ASN B 476 3.87 55.99 REMARK 500 PHE B 483 -155.95 -155.78 REMARK 500 SER B 519 147.65 -174.19 REMARK 500 ASP B 541 -97.02 -125.53 REMARK 500 ASN C 289 32.64 -90.09 REMARK 500 GLU C 392 -21.53 80.42 REMARK 500 THR C 451 -85.33 -41.18 REMARK 500 ASN C 476 39.17 32.30 REMARK 500 ALA C 487 144.99 -177.06 REMARK 500 ASP C 541 -92.81 -134.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FJW RELATED DB: PDB REMARK 900 YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN COMPLEXED WITH DSL1 WXWXSEM REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5FJZ RELATED DB: PDB REMARK 900 YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN COMPLEXED WITH DSL1 WXWXV REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5FK0 RELATED DB: PDB REMARK 900 YEAST DELTA-COP-I MU-HOMOLOGY DOMAIN DBREF 5FJX A 282 546 UNP P43621 COPD_YEAST 282 546 DBREF 5FJX B 282 546 UNP P43621 COPD_YEAST 282 546 DBREF 5FJX C 282 546 UNP P43621 COPD_YEAST 282 546 DBREF 5FJX D 1 8 UNP P35197 GCS1_YEAST 345 352 DBREF 5FJX E 1 8 UNP P35197 GCS1_YEAST 345 352 SEQADV 5FJX GLY A 277 UNP P43621 EXPRESSION TAG SEQADV 5FJX PRO A 278 UNP P43621 EXPRESSION TAG SEQADV 5FJX LEU A 279 UNP P43621 EXPRESSION TAG SEQADV 5FJX GLY A 280 UNP P43621 EXPRESSION TAG SEQADV 5FJX SER A 281 UNP P43621 EXPRESSION TAG SEQADV 5FJX ALA A 404 UNP P43621 TRP 404 ENGINEERED MUTATION SEQADV 5FJX GLY B 277 UNP P43621 EXPRESSION TAG SEQADV 5FJX PRO B 278 UNP P43621 EXPRESSION TAG SEQADV 5FJX LEU B 279 UNP P43621 EXPRESSION TAG SEQADV 5FJX GLY B 280 UNP P43621 EXPRESSION TAG SEQADV 5FJX SER B 281 UNP P43621 EXPRESSION TAG SEQADV 5FJX ALA B 404 UNP P43621 TRP 404 ENGINEERED MUTATION SEQADV 5FJX GLY C 277 UNP P43621 EXPRESSION TAG SEQADV 5FJX PRO C 278 UNP P43621 EXPRESSION TAG SEQADV 5FJX LEU C 279 UNP P43621 EXPRESSION TAG SEQADV 5FJX GLY C 280 UNP P43621 EXPRESSION TAG SEQADV 5FJX SER C 281 UNP P43621 EXPRESSION TAG SEQADV 5FJX ALA C 404 UNP P43621 TRP 404 ENGINEERED MUTATION SEQRES 1 A 270 GLY PRO LEU GLY SER GLU GLU ASP VAL PRO GLU ASN ASN SEQRES 2 A 270 GLY ILE LEU ILE SER ILE LYS GLU VAL ILE ASN ALA GLU SEQRES 3 A 270 PHE SER ARG ASP GLY THR ILE HIS SER SER GLU LEU LYS SEQRES 4 A 270 GLY VAL LEU GLU LEU ARG ILE ASN ASP HIS ASP LEU SER SEQRES 5 A 270 HIS SER ASN LEU LYS LEU ALA ASP SER ILE ASP VAL ARG SEQRES 6 A 270 ASP LYS SER PHE GLN PHE LYS THR HIS PRO ASN ILE ASP SEQRES 7 A 270 LYS GLN SER PHE LEU SER THR LYS LEU ILE SER LEU ARG SEQRES 8 A 270 ASP LYS SER LYS ALA PHE PRO ALA ASN ASP GLN SER LEU SEQRES 9 A 270 GLY VAL LEU ARG TRP ARG LYS VAL ALA PRO ALA GLU ASP SEQRES 10 A 270 ASP SER LEU ILE PRO LEU THR LEU THR THR ALA VAL SER SEQRES 11 A 270 PRO SER GLU SER GLN GLN GLY PHE ASP VAL ILE ILE GLU SEQRES 12 A 270 TYR GLU SER VAL LEU GLU THR GLU LEU ALA ASP VAL ILE SEQRES 13 A 270 PHE THR ILE PRO VAL PHE PRO GLN GLU PRO VAL ASP ILE SEQRES 14 A 270 ASN THR GLU SER SER THR CYS SER ASP ALA GLU VAL VAL SEQRES 15 A 270 ASN MSE ASP GLN GLU MSE GLY THR SER ILE LYS ILE SER SEQRES 16 A 270 LYS ILE ALA ALA ASN ASP ALA GLY ALA LEU ALA PHE THR SEQRES 17 A 270 ILE GLU ALA PRO TYR GLU ASP ALA LEU TYR PRO MSE THR SEQRES 18 A 270 VAL SER PHE GLN GLU SER THR ARG ASP LYS LEU ALA LYS SEQRES 19 A 270 SER PHE THR GLY MSE ALA ILE GLN SER VAL VAL MSE ALA SEQRES 20 A 270 ASN ASP HIS ASP GLN GLU LEU PRO TYR ASP VAL ILE THR SEQRES 21 A 270 SER LEU LYS SER ASP GLU TYR LEU VAL GLN SEQRES 1 B 270 GLY PRO LEU GLY SER GLU GLU ASP VAL PRO GLU ASN ASN SEQRES 2 B 270 GLY ILE LEU ILE SER ILE LYS GLU VAL ILE ASN ALA GLU SEQRES 3 B 270 PHE SER ARG ASP GLY THR ILE HIS SER SER GLU LEU LYS SEQRES 4 B 270 GLY VAL LEU GLU LEU ARG ILE ASN ASP HIS ASP LEU SER SEQRES 5 B 270 HIS SER ASN LEU LYS LEU ALA ASP SER ILE ASP VAL ARG SEQRES 6 B 270 ASP LYS SER PHE GLN PHE LYS THR HIS PRO ASN ILE ASP SEQRES 7 B 270 LYS GLN SER PHE LEU SER THR LYS LEU ILE SER LEU ARG SEQRES 8 B 270 ASP LYS SER LYS ALA PHE PRO ALA ASN ASP GLN SER LEU SEQRES 9 B 270 GLY VAL LEU ARG TRP ARG LYS VAL ALA PRO ALA GLU ASP SEQRES 10 B 270 ASP SER LEU ILE PRO LEU THR LEU THR THR ALA VAL SER SEQRES 11 B 270 PRO SER GLU SER GLN GLN GLY PHE ASP VAL ILE ILE GLU SEQRES 12 B 270 TYR GLU SER VAL LEU GLU THR GLU LEU ALA ASP VAL ILE SEQRES 13 B 270 PHE THR ILE PRO VAL PHE PRO GLN GLU PRO VAL ASP ILE SEQRES 14 B 270 ASN THR GLU SER SER THR CYS SER ASP ALA GLU VAL VAL SEQRES 15 B 270 ASN MSE ASP GLN GLU MSE GLY THR SER ILE LYS ILE SER SEQRES 16 B 270 LYS ILE ALA ALA ASN ASP ALA GLY ALA LEU ALA PHE THR SEQRES 17 B 270 ILE GLU ALA PRO TYR GLU ASP ALA LEU TYR PRO MSE THR SEQRES 18 B 270 VAL SER PHE GLN GLU SER THR ARG ASP LYS LEU ALA LYS SEQRES 19 B 270 SER PHE THR GLY MSE ALA ILE GLN SER VAL VAL MSE ALA SEQRES 20 B 270 ASN ASP HIS ASP GLN GLU LEU PRO TYR ASP VAL ILE THR SEQRES 21 B 270 SER LEU LYS SER ASP GLU TYR LEU VAL GLN SEQRES 1 C 270 GLY PRO LEU GLY SER GLU GLU ASP VAL PRO GLU ASN ASN SEQRES 2 C 270 GLY ILE LEU ILE SER ILE LYS GLU VAL ILE ASN ALA GLU SEQRES 3 C 270 PHE SER ARG ASP GLY THR ILE HIS SER SER GLU LEU LYS SEQRES 4 C 270 GLY VAL LEU GLU LEU ARG ILE ASN ASP HIS ASP LEU SER SEQRES 5 C 270 HIS SER ASN LEU LYS LEU ALA ASP SER ILE ASP VAL ARG SEQRES 6 C 270 ASP LYS SER PHE GLN PHE LYS THR HIS PRO ASN ILE ASP SEQRES 7 C 270 LYS GLN SER PHE LEU SER THR LYS LEU ILE SER LEU ARG SEQRES 8 C 270 ASP LYS SER LYS ALA PHE PRO ALA ASN ASP GLN SER LEU SEQRES 9 C 270 GLY VAL LEU ARG TRP ARG LYS VAL ALA PRO ALA GLU ASP SEQRES 10 C 270 ASP SER LEU ILE PRO LEU THR LEU THR THR ALA VAL SER SEQRES 11 C 270 PRO SER GLU SER GLN GLN GLY PHE ASP VAL ILE ILE GLU SEQRES 12 C 270 TYR GLU SER VAL LEU GLU THR GLU LEU ALA ASP VAL ILE SEQRES 13 C 270 PHE THR ILE PRO VAL PHE PRO GLN GLU PRO VAL ASP ILE SEQRES 14 C 270 ASN THR GLU SER SER THR CYS SER ASP ALA GLU VAL VAL SEQRES 15 C 270 ASN MSE ASP GLN GLU MSE GLY THR SER ILE LYS ILE SER SEQRES 16 C 270 LYS ILE ALA ALA ASN ASP ALA GLY ALA LEU ALA PHE THR SEQRES 17 C 270 ILE GLU ALA PRO TYR GLU ASP ALA LEU TYR PRO MSE THR SEQRES 18 C 270 VAL SER PHE GLN GLU SER THR ARG ASP LYS LEU ALA LYS SEQRES 19 C 270 SER PHE THR GLY MSE ALA ILE GLN SER VAL VAL MSE ALA SEQRES 20 C 270 ASN ASP HIS ASP GLN GLU LEU PRO TYR ASP VAL ILE THR SEQRES 21 C 270 SER LEU LYS SER ASP GLU TYR LEU VAL GLN SEQRES 1 D 8 ASP GLU ASP LYS TRP ASP ASP PHE SEQRES 1 E 8 ASP GLU ASP LYS TRP ASP ASP PHE MODRES 5FJX MSE A 460 MET SELENOMETHIONINE MODRES 5FJX MSE A 464 MET SELENOMETHIONINE MODRES 5FJX MSE A 496 MET SELENOMETHIONINE MODRES 5FJX MSE A 515 MET SELENOMETHIONINE MODRES 5FJX MSE A 522 MET SELENOMETHIONINE MODRES 5FJX MSE B 460 MET SELENOMETHIONINE MODRES 5FJX MSE B 464 MET SELENOMETHIONINE MODRES 5FJX MSE B 496 MET SELENOMETHIONINE MODRES 5FJX MSE B 515 MET SELENOMETHIONINE MODRES 5FJX MSE B 522 MET SELENOMETHIONINE MODRES 5FJX MSE C 460 MET SELENOMETHIONINE MODRES 5FJX MSE C 464 MET SELENOMETHIONINE MODRES 5FJX MSE C 496 MET SELENOMETHIONINE MODRES 5FJX MSE C 515 MET SELENOMETHIONINE MODRES 5FJX MSE C 522 MET SELENOMETHIONINE HET MSE A 460 8 HET MSE A 464 13 HET MSE A 496 8 HET MSE A 515 8 HET MSE A 522 8 HET MSE B 460 8 HET MSE B 464 8 HET MSE B 496 8 HET MSE B 515 13 HET MSE B 522 13 HET MSE C 460 8 HET MSE C 464 8 HET MSE C 496 8 HET MSE C 515 8 HET MSE C 522 13 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 6 HOH *258(H2 O) HELIX 1 1 ASP A 324 SER A 328 5 5 HELIX 2 2 ASP A 342 GLN A 346 5 5 HELIX 3 3 ASP A 354 LYS A 362 1 9 HELIX 4 4 TYR A 489 TYR A 494 5 6 HELIX 5 5 ASP B 342 GLN B 346 5 5 HELIX 6 6 ASP B 354 LYS B 362 1 9 HELIX 7 7 TYR B 489 TYR B 494 5 6 HELIX 8 8 ASP C 324 SER C 328 5 5 HELIX 9 9 ASP C 354 LYS C 362 1 9 HELIX 10 10 TYR C 489 TYR C 494 5 6 SHEET 1 AA 6 LYS A 348 THR A 349 0 SHEET 2 AA 6 LEU A 380 ALA A 389 -1 O ARG A 384 N LYS A 348 SHEET 3 AA 6 ILE A 309 ILE A 322 -1 O SER A 312 N ALA A 389 SHEET 4 AA 6 ILE A 291 PHE A 303 -1 O LEU A 292 N ARG A 321 SHEET 5 AA 6 ASP A 533 VAL A 545 1 O ASP A 533 N ILE A 293 SHEET 6 AA 6 GLN A 501 ARG A 505 -1 O GLU A 502 N LEU A 538 SHEET 1 AB 9 LYS A 348 THR A 349 0 SHEET 2 AB 9 LEU A 380 ALA A 389 -1 O ARG A 384 N LYS A 348 SHEET 3 AB 9 ILE A 309 ILE A 322 -1 O SER A 312 N ALA A 389 SHEET 4 AB 9 ILE A 291 PHE A 303 -1 O LEU A 292 N ARG A 321 SHEET 5 AB 9 ASP A 533 VAL A 545 1 O ASP A 533 N ILE A 293 SHEET 6 AB 9 MSE A 496 SER A 499 -1 O MSE A 496 N VAL A 545 SHEET 7 AB 9 LEU A 428 ILE A 435 -1 O ILE A 432 N SER A 499 SHEET 8 AB 9 GLY A 465 ILE A 473 -1 O THR A 466 N ILE A 435 SHEET 9 AB 9 GLU A 456 ASP A 461 -1 O GLU A 456 N LYS A 469 SHEET 1 AC 2 GLN A 501 ARG A 505 0 SHEET 2 AC 2 ASP A 533 VAL A 545 -1 O THR A 536 N THR A 504 SHEET 1 AD 4 LEU A 363 ILE A 364 0 SHEET 2 AD 4 SER A 330 LEU A 334 -1 O LEU A 332 N ILE A 364 SHEET 3 AD 4 ILE A 517 MSE A 522 -1 N GLN A 518 O LYS A 333 SHEET 4 AD 4 ASP A 525 GLU A 529 -1 N ASP A 525 O MSE A 522 SHEET 1 AE 4 LEU A 399 PRO A 407 0 SHEET 2 AE 4 GLY A 413 SER A 422 -1 O ASP A 415 N SER A 406 SHEET 3 AE 4 ALA A 478 GLU A 486 -1 O GLY A 479 N TYR A 420 SHEET 4 AE 4 ASP A 444 ILE A 445 -1 O ASP A 444 N THR A 484 SHEET 1 BA 6 LYS B 348 THR B 349 0 SHEET 2 BA 6 LEU B 380 ALA B 389 -1 O ARG B 384 N LYS B 348 SHEET 3 BA 6 ILE B 309 ILE B 322 -1 O SER B 312 N ALA B 389 SHEET 4 BA 6 ILE B 291 PHE B 303 -1 O LEU B 292 N ARG B 321 SHEET 5 BA 6 ASP B 533 VAL B 545 1 O ASP B 533 N ILE B 293 SHEET 6 BA 6 GLN B 501 ARG B 505 -1 O GLU B 502 N LEU B 538 SHEET 1 BB 9 LYS B 348 THR B 349 0 SHEET 2 BB 9 LEU B 380 ALA B 389 -1 O ARG B 384 N LYS B 348 SHEET 3 BB 9 ILE B 309 ILE B 322 -1 O SER B 312 N ALA B 389 SHEET 4 BB 9 ILE B 291 PHE B 303 -1 O LEU B 292 N ARG B 321 SHEET 5 BB 9 ASP B 533 VAL B 545 1 O ASP B 533 N ILE B 293 SHEET 6 BB 9 MSE B 496 SER B 499 -1 O MSE B 496 N VAL B 545 SHEET 7 BB 9 LEU B 428 ILE B 435 -1 O ILE B 432 N SER B 499 SHEET 8 BB 9 THR B 466 ILE B 473 -1 O THR B 466 N ILE B 435 SHEET 9 BB 9 GLU B 456 MSE B 460 -1 O GLU B 456 N LYS B 469 SHEET 1 BC 2 GLN B 501 ARG B 505 0 SHEET 2 BC 2 ASP B 533 VAL B 545 -1 O THR B 536 N THR B 504 SHEET 1 BD 3 LEU B 363 ILE B 364 0 SHEET 2 BD 3 SER B 330 LEU B 334 -1 O LEU B 332 N ILE B 364 SHEET 3 BD 3 ILE B 517 MSE B 522 -1 N GLN B 518 O LYS B 333 SHEET 1 BE 3 LEU B 399 THR B 402 0 SHEET 2 BE 3 ILE B 417 SER B 422 -1 O GLU B 419 N THR B 402 SHEET 3 BE 3 ALA B 478 ALA B 482 -1 O GLY B 479 N TYR B 420 SHEET 1 BF 2 GLY B 413 PHE B 414 0 SHEET 2 BF 2 ILE B 485 GLU B 486 -1 O ILE B 485 N PHE B 414 SHEET 1 CA 6 LYS C 348 THR C 349 0 SHEET 2 CA 6 LEU C 380 VAL C 388 -1 O ARG C 384 N LYS C 348 SHEET 3 CA 6 ILE C 309 ILE C 322 -1 O LEU C 314 N LYS C 387 SHEET 4 CA 6 ILE C 291 PHE C 303 -1 O LEU C 292 N ARG C 321 SHEET 5 CA 6 ASP C 533 VAL C 545 1 O ASP C 533 N ILE C 293 SHEET 6 CA 6 GLN C 501 THR C 504 -1 O GLU C 502 N LEU C 538 SHEET 1 CB 9 LYS C 348 THR C 349 0 SHEET 2 CB 9 LEU C 380 VAL C 388 -1 O ARG C 384 N LYS C 348 SHEET 3 CB 9 ILE C 309 ILE C 322 -1 O LEU C 314 N LYS C 387 SHEET 4 CB 9 ILE C 291 PHE C 303 -1 O LEU C 292 N ARG C 321 SHEET 5 CB 9 ASP C 533 VAL C 545 1 O ASP C 533 N ILE C 293 SHEET 6 CB 9 MSE C 496 SER C 499 -1 O MSE C 496 N VAL C 545 SHEET 7 CB 9 LEU C 428 ILE C 435 -1 O ILE C 432 N SER C 499 SHEET 8 CB 9 GLY C 465 ILE C 473 -1 O THR C 466 N ILE C 435 SHEET 9 CB 9 GLU C 456 ASP C 461 -1 O GLU C 456 N LYS C 469 SHEET 1 CC 2 GLN C 501 THR C 504 0 SHEET 2 CC 2 ASP C 533 VAL C 545 -1 O THR C 536 N THR C 504 SHEET 1 CD 4 LEU C 363 ILE C 364 0 SHEET 2 CD 4 SER C 330 LEU C 334 -1 O LEU C 332 N ILE C 364 SHEET 3 CD 4 ILE C 517 MSE C 522 -1 N GLN C 518 O LYS C 333 SHEET 4 CD 4 ASP C 525 GLU C 529 -1 N ASP C 525 O MSE C 522 SHEET 1 CE 4 LEU C 399 PRO C 407 0 SHEET 2 CE 4 GLY C 413 SER C 422 -1 O ASP C 415 N SER C 406 SHEET 3 CE 4 ALA C 478 GLU C 486 -1 O GLY C 479 N TYR C 420 SHEET 4 CE 4 ASP C 444 ILE C 445 -1 O ASP C 444 N THR C 484 LINK C ASN A 459 N MSE A 460 1555 1555 1.33 LINK C MSE A 460 N ASP A 461 1555 1555 1.32 LINK C GLU A 463 N MSE A 464 1555 1555 1.33 LINK C MSE A 464 N GLY A 465 1555 1555 1.35 LINK C PRO A 495 N MSE A 496 1555 1555 1.35 LINK C MSE A 496 N THR A 497 1555 1555 1.32 LINK C GLY A 514 N MSE A 515 1555 1555 1.33 LINK C MSE A 515 N ALA A 516 1555 1555 1.33 LINK C VAL A 521 N MSE A 522 1555 1555 1.34 LINK C MSE A 522 N ALA A 523 1555 1555 1.33 LINK C ASN B 459 N MSE B 460 1555 1555 1.34 LINK C MSE B 460 N ASP B 461 1555 1555 1.34 LINK C GLU B 463 N MSE B 464 1555 1555 1.33 LINK C MSE B 464 N GLY B 465 1555 1555 1.33 LINK C PRO B 495 N MSE B 496 1555 1555 1.33 LINK C MSE B 496 N THR B 497 1555 1555 1.32 LINK C GLY B 514 N MSE B 515 1555 1555 1.33 LINK C MSE B 515 N ALA B 516 1555 1555 1.34 LINK C VAL B 521 N MSE B 522 1555 1555 1.36 LINK C MSE B 522 N ALA B 523 1555 1555 1.33 LINK C ASN C 459 N MSE C 460 1555 1555 1.33 LINK C MSE C 460 N ASP C 461 1555 1555 1.32 LINK C GLU C 463 N MSE C 464 1555 1555 1.32 LINK C MSE C 464 N GLY C 465 1555 1555 1.34 LINK C PRO C 495 N MSE C 496 1555 1555 1.34 LINK C MSE C 496 N THR C 497 1555 1555 1.32 LINK C GLY C 514 N MSE C 515 1555 1555 1.34 LINK C MSE C 515 N ALA C 516 1555 1555 1.33 LINK C VAL C 521 N MSE C 522 1555 1555 1.34 LINK C MSE C 522 N ALA C 523 1555 1555 1.34 CISPEP 1 TYR A 494 PRO A 495 0 1.35 CISPEP 2 TYR B 494 PRO B 495 0 -4.89 CISPEP 3 TYR C 494 PRO C 495 0 1.20 CRYST1 70.765 84.855 148.640 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014131 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006728 0.00000