HEADER HYDROLASE 02-JUL-15 5CCO TITLE STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE WITH DUMP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTPASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PHAGE 80ALPHA; SOURCE 3 ORGANISM_TAXID: 53369; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PHAGE, PATHOGENICITY ISLAND, SAPI INDUCTION, GENE TRANSFER, KEYWDS 2 MOONLIGHTING PROTEINS, DUT, DUTP, G PROTEIN, P-LOOP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MAIQUES,N.QUILES-PUCHALT,J.DONDERIS,J.R.CIGES,C.ALITE,J.BOWRING, AUTHOR 2 J.R.PENADES,A.MARINA REVDAT 4 10-JAN-24 5CCO 1 LINK REVDAT 3 13-SEP-17 5CCO 1 REMARK REVDAT 2 29-JUN-16 5CCO 1 JRNL REVDAT 1 11-MAY-16 5CCO 0 JRNL AUTH E.MAIQUES,N.QUILES-PUCHALT,J.DONDERIS,J.R.CIGES-TOMAS, JRNL AUTH 2 C.ALITE,J.Z.BOWRING,S.HUMPHREY,J.R.PENADES,A.MARINA JRNL TITL ANOTHER LOOK AT THE MECHANISM INVOLVING TRIMERIC DUTPASES IN JRNL TITL 2 STAPHYLOCOCCUS AUREUS PATHOGENICITY ISLAND INDUCTION JRNL TITL 3 INVOLVES NOVEL PLAYERS IN THE PARTY. JRNL REF NUCLEIC ACIDS RES. V. 44 5457 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27112567 JRNL DOI 10.1093/NAR/GKW317 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1289 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.614 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1331 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1271 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1801 ; 1.633 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2927 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 7.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;35.704 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 235 ;16.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.726 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1484 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 285 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 667 ; 2.466 ; 3.656 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 666 ; 2.457 ; 3.653 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 832 ; 3.754 ; 5.469 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 833 ; 3.753 ; 5.474 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 664 ; 3.081 ; 4.073 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 665 ; 3.079 ; 4.071 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 970 ; 4.905 ; 5.949 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1343 ; 6.493 ;28.085 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1338 ; 6.499 ;28.079 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 61.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03100 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3ZEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% ETHANOL, 0.1 M NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 43.50000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 43.50000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 43.50000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 43.50000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 43.50000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 43.50000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 43.50000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 43.50000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 43.50000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 43.50000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 43.50000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 43.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 43.50000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 43.50000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -43.50000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 43.50000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 202 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 169 REMARK 465 VAL A 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 ASN A 20 CG OD1 ND2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 ARG A 119 NE CZ NH1 NH2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 SER A 156 OG REMARK 470 LYS A 163 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 40 -4.51 72.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD1 REMARK 620 2 ASP A 95 OD2 48.0 REMARK 620 3 ASP A 95 OD1 0.0 48.0 REMARK 620 4 ASP A 95 OD2 48.0 0.0 48.0 REMARK 620 5 HOH A 323 O 70.9 75.7 70.9 75.7 REMARK 620 6 HOH A 323 O 78.0 125.8 78.0 125.8 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZEZ RELATED DB: PDB REMARK 900 3ZEZ CONTAINS THE SAME PROTEIN COMPLEXED WITH DUMPNPP. DBREF 5CCO A 1 170 UNP A4ZF98 A4ZF98_9CAUD 1 170 SEQRES 1 A 170 MET THR ASN THR LEU GLN VAL LYS LEU LEU SER LYS ASN SEQRES 2 A 170 ALA ARG MET PRO GLU ARG ASN HIS LYS THR ASP ALA GLY SEQRES 3 A 170 TYR ASP ILE PHE SER ALA GLU THR VAL VAL LEU GLU PRO SEQRES 4 A 170 GLN GLU LYS ALA VAL ILE LYS THR ASP VAL ALA VAL SER SEQRES 5 A 170 ILE PRO GLU GLY TYR VAL GLY LEU LEU THR SER ARG SER SEQRES 6 A 170 GLY VAL SER SER LYS THR HIS LEU VAL ILE GLU THR GLY SEQRES 7 A 170 LYS ILE ASP ALA GLY TYR HIS GLY ASN LEU GLY ILE ASN SEQRES 8 A 170 ILE LYS ASN ASP HIS GLU ASP ASP LYS MET GLN THR ILE SEQRES 9 A 170 PHE LEU ARG ASN ILE ASP ASN GLU LYS ILE PHE GLU LYS SEQRES 10 A 170 GLU ARG HIS LEU TYR LYS LEU GLY SER TYR ARG ILE GLU SEQRES 11 A 170 LYS GLY GLU ARG ILE ALA GLN LEU VAL ILE VAL PRO ILE SEQRES 12 A 170 TRP THR PRO GLU LEU LYS GLN VAL GLU GLU PHE GLU SER SEQRES 13 A 170 VAL SER GLU ARG GLY GLU LYS GLY PHE GLY SER SER GLY SEQRES 14 A 170 VAL HET UMP A 201 20 HET MG A 202 1 HET MG A 203 1 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN UMP DUMP FORMUL 2 UMP C9 H13 N2 O8 P FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *66(H2 O) HELIX 1 AA1 ARG A 64 THR A 71 1 8 SHEET 1 AA1 2 GLN A 6 LEU A 9 0 SHEET 2 AA1 2 VAL A 49 SER A 52 -1 O ALA A 50 N LYS A 8 SHEET 1 AA2 4 TYR A 27 PHE A 30 0 SHEET 2 AA2 4 ARG A 134 PRO A 142 -1 O ALA A 136 N ILE A 29 SHEET 3 AA2 4 TYR A 57 SER A 63 -1 N LEU A 60 O VAL A 139 SHEET 4 AA2 4 GLY A 78 ILE A 80 -1 O ILE A 80 N GLY A 59 SHEET 1 AA3 2 VAL A 35 LEU A 37 0 SHEET 2 AA3 2 TYR A 127 ILE A 129 -1 O ILE A 129 N VAL A 35 SHEET 1 AA4 3 LYS A 42 LYS A 46 0 SHEET 2 AA4 3 GLY A 89 ASN A 94 -1 O ILE A 90 N ILE A 45 SHEET 3 AA4 3 LEU A 73 ILE A 75 -1 N VAL A 74 O LYS A 93 SHEET 1 AA5 2 GLN A 102 THR A 103 0 SHEET 2 AA5 2 TYR A 122 LYS A 123 -1 O TYR A 122 N THR A 103 SHEET 1 AA6 2 LEU A 106 ARG A 107 0 SHEET 2 AA6 2 LYS A 113 ILE A 114 -1 O ILE A 114 N LEU A 106 LINK OD1 ASP A 95 MG MG A 203 1555 1555 2.79 LINK OD2 ASP A 95 MG MG A 203 1555 1555 2.61 LINK OD1 ASP A 95 MG MG A 203 1555 8555 2.61 LINK OD2 ASP A 95 MG MG A 203 1555 8555 2.39 LINK MG MG A 203 O HOH A 323 1555 1555 2.60 LINK MG MG A 203 O HOH A 323 1555 11455 2.37 SITE 1 AC1 15 SER A 65 GLY A 78 LYS A 79 ASP A 81 SITE 2 AC1 15 TYR A 84 GLY A 89 ARG A 160 GLY A 164 SITE 3 AC1 15 PHE A 165 GLY A 166 HOH A 304 HOH A 305 SITE 4 AC1 15 HOH A 308 HOH A 332 HOH A 335 SITE 1 AC2 2 ASP A 95 HOH A 323 CRYST1 87.000 87.000 87.000 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011494 0.00000