HEADER TRANSFERASE 17-FEB-15 5AIR TITLE STRUCTURAL ANALYSIS OF MOUSE GSK3BETA FUSED WITH LRP6 PEPTIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6,GLYCOGEN COMPND 3 SYNTHASE KINASE-3 BETA; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: RESIDUES 1565-1574, KINASE DOMAIN, RESIDUES 6-420,RESIDUES COMPND 6 1565-1574, KINASE DOMAIN, RESIDUES 6-420,RESIDUES 1565-1574, KINASE COMPND 7 DOMAIN, RESIDUES 6-420,RESIDUES 1565-1574, KINASE DOMAIN, RESIDUES 6- COMPND 8 420; COMPND 9 SYNONYM: LRP-6,GSK-3 BETA,SERINE/THREONINE-PROTEIN KINASE GSK3B; COMPND 10 EC: 2.7.11.26,2.7.11.1; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: AC-TO-BAC BACULOVIRUS EXPRESSION SYSTEM,AC-TO-BAC COMPND 13 BACULOVIRUS EXPRESSION SYSTEM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HUMAN, MOUSE; SOURCE 4 ORGANISM_TAXID: 9606, 10090; SOURCE 5 GENE: LRP6, GSK3B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TRANSFERASE, LRP6, GSK3 BETA EXPDTA X-RAY DIFFRACTION AUTHOR K.L.KIM REVDAT 2 20-FEB-19 5AIR 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV REVDAT 1 01-APR-15 5AIR 0 JRNL AUTH K.L.KIM,J.S.KIM,J.S.CHA,H.S.CHO,N.C.HA JRNL TITL STRUCTURAL ANALYSIS OF MOUSE GSK3 BETA FUSED WITH LRP6 JRNL TITL 2 PEPTIDE JRNL REF BIODESIGN V. 3 55 2015 JRNL REFN ISSN 2288-6982 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 40183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5687 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : 2.13000 REMARK 3 B33 (A**2) : -3.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.315 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5823 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5633 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7912 ; 1.726 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12974 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 708 ; 7.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;36.367 ;23.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 988 ;18.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;20.454 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 892 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6469 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1317 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2850 ; 3.894 ; 4.743 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2849 ; 3.895 ; 4.743 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3552 ; 6.434 ; 7.087 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3553 ; 6.433 ; 7.087 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2973 ; 3.705 ; 5.133 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2974 ; 3.704 ; 5.133 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4361 ; 6.126 ; 7.497 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 23876 ;11.293 ;43.059 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 23875 ;11.294 ;43.061 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5AIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290063019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42941 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 177.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM MALONATE, 20 % (V/V) PEG REMARK 280 3350, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.45100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.73550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.73550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.45100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLU A -8 REMARK 465 PRO A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 PRO A -4 REMARK 465 PRO A -3 REMARK 465 PRO A -2 REMARK 465 THR A -1 REMARK 465 PRO A 0 REMARK 465 ARG A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 PHE A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 PHE A 291 REMARK 465 LYS A 292 REMARK 465 ILE A 384 REMARK 465 GLN A 385 REMARK 465 ALA A 386 REMARK 465 ALA A 387 REMARK 465 ALA A 388 REMARK 465 SER A 389 REMARK 465 PRO A 390 REMARK 465 PRO A 391 REMARK 465 ALA A 392 REMARK 465 ASN A 393 REMARK 465 ALA A 394 REMARK 465 THR A 395 REMARK 465 ALA A 396 REMARK 465 ALA A 397 REMARK 465 SER A 398 REMARK 465 ASP A 399 REMARK 465 THR A 400 REMARK 465 ASN A 401 REMARK 465 ALA A 402 REMARK 465 GLY A 403 REMARK 465 ASP A 404 REMARK 465 ARG A 405 REMARK 465 GLY A 406 REMARK 465 GLN A 407 REMARK 465 THR A 408 REMARK 465 ASN A 409 REMARK 465 ASN A 410 REMARK 465 ALA A 411 REMARK 465 ALA A 412 REMARK 465 SER A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 ALA A 416 REMARK 465 SER A 417 REMARK 465 ASN A 418 REMARK 465 SER A 419 REMARK 465 THR A 420 REMARK 465 MET B -9 REMARK 465 GLU B -8 REMARK 465 PRO B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 PRO B -4 REMARK 465 PRO B -3 REMARK 465 PRO B -2 REMARK 465 THR B -1 REMARK 465 PRO B 0 REMARK 465 ARG B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 PHE B 10 REMARK 465 ALA B 11 REMARK 465 GLU B 12 REMARK 465 SER B 13 REMARK 465 CYS B 14 REMARK 465 LYS B 15 REMARK 465 PRO B 16 REMARK 465 VAL B 17 REMARK 465 GLN B 18 REMARK 465 GLN B 19 REMARK 465 PRO B 20 REMARK 465 SER B 21 REMARK 465 TYR B 288 REMARK 465 LYS B 292 REMARK 465 GLN B 385 REMARK 465 ALA B 386 REMARK 465 ALA B 387 REMARK 465 ALA B 388 REMARK 465 SER B 389 REMARK 465 PRO B 390 REMARK 465 PRO B 391 REMARK 465 ALA B 392 REMARK 465 ASN B 393 REMARK 465 ALA B 394 REMARK 465 THR B 395 REMARK 465 ALA B 396 REMARK 465 ALA B 397 REMARK 465 SER B 398 REMARK 465 ASP B 399 REMARK 465 THR B 400 REMARK 465 ASN B 401 REMARK 465 ALA B 402 REMARK 465 GLY B 403 REMARK 465 ASP B 404 REMARK 465 ARG B 405 REMARK 465 GLY B 406 REMARK 465 GLN B 407 REMARK 465 THR B 408 REMARK 465 ASN B 409 REMARK 465 ASN B 410 REMARK 465 ALA B 411 REMARK 465 ALA B 412 REMARK 465 SER B 413 REMARK 465 ALA B 414 REMARK 465 SER B 415 REMARK 465 ALA B 416 REMARK 465 SER B 417 REMARK 465 ASN B 418 REMARK 465 SER B 419 REMARK 465 THR B 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 25 OG REMARK 470 PHE B 293 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 91 OE1 GLU B 125 1.72 REMARK 500 OG1 THR B 275 O ILE B 296 1.74 REMARK 500 NZ LYS B 349 O GLY B 353 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 35 -73.94 -93.91 REMARK 500 LYS A 122 98.26 -68.29 REMARK 500 LYS A 123 163.82 177.51 REMARK 500 ASP A 124 67.55 -66.86 REMARK 500 ASP A 181 49.67 -153.64 REMARK 500 CYS A 199 -19.87 -142.69 REMARK 500 TYR A 216 35.39 -92.26 REMARK 500 ASP A 233 43.83 -106.04 REMARK 500 TYR A 288 92.75 -68.22 REMARK 500 PRO A 351 -38.36 -36.80 REMARK 500 ASN A 370 75.67 -154.79 REMARK 500 PHE B 23 -155.49 -119.49 REMARK 500 ASP B 31 -167.04 -73.01 REMARK 500 ASP B 49 88.30 -69.69 REMARK 500 ASP B 77 -75.71 -78.14 REMARK 500 ASP B 181 42.68 -153.38 REMARK 500 ASP B 200 75.87 62.69 REMARK 500 PRO B 286 36.91 -95.22 REMARK 500 GLU B 290 -158.80 -143.39 REMARK 500 ASN B 370 87.25 -163.77 REMARK 500 PRO B 372 -10.31 -49.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 119 GLY B 120 132.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MLI A 1001 REMARK 615 MLI B 1002 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. DBREF 5AIR A -8 2 UNP O75581 LRP6_HUMAN 1565 1575 DBREF 5AIR A 4 420 UNP Q9WV60 GSK3B_MOUSE 4 420 DBREF 5AIR B -8 2 UNP O75581 LRP6_HUMAN 1565 1575 DBREF 5AIR B 4 420 UNP Q9WV60 GSK3B_MOUSE 4 420 SEQADV 5AIR MET A -9 UNP O75581 INITIATING METHIONINE SEQADV 5AIR SER A 3 UNP O75581 LINKER SEQADV 5AIR ILE A 30 UNP Q9WV60 ARG 30 CONFLICT SEQADV 5AIR MET B -9 UNP O75581 INITIATING METHIONINE SEQADV 5AIR SER B 3 UNP O75581 LINKER SEQADV 5AIR ILE B 30 UNP Q9WV60 ARG 30 CONFLICT SEQRES 1 A 430 MET GLU PRO VAL PRO PRO PRO PRO THR PRO ARG SER SER SEQRES 2 A 430 ARG PRO ARG THR THR SER PHE ALA GLU SER CYS LYS PRO SEQRES 3 A 430 VAL GLN GLN PRO SER ALA PHE GLY SER MET LYS VAL SER SEQRES 4 A 430 ILE ASP LYS ASP GLY SER LYS VAL THR THR VAL VAL ALA SEQRES 5 A 430 THR PRO GLY GLN GLY PRO ASP ARG PRO GLN GLU VAL SER SEQRES 6 A 430 TYR THR ASP THR LYS VAL ILE GLY ASN GLY SER PHE GLY SEQRES 7 A 430 VAL VAL TYR GLN ALA LYS LEU CYS ASP SER GLY GLU LEU SEQRES 8 A 430 VAL ALA ILE LYS LYS VAL LEU GLN ASP LYS ARG PHE LYS SEQRES 9 A 430 ASN ARG GLU LEU GLN ILE MET ARG LYS LEU ASP HIS CYS SEQRES 10 A 430 ASN ILE VAL ARG LEU ARG TYR PHE PHE TYR SER SER GLY SEQRES 11 A 430 GLU LYS LYS ASP GLU VAL TYR LEU ASN LEU VAL LEU ASP SEQRES 12 A 430 TYR VAL PRO GLU THR VAL TYR ARG VAL ALA ARG HIS TYR SEQRES 13 A 430 SER ARG ALA LYS GLN THR LEU PRO VAL ILE TYR VAL LYS SEQRES 14 A 430 LEU TYR MET TYR GLN LEU PHE ARG SER LEU ALA TYR ILE SEQRES 15 A 430 HIS SER PHE GLY ILE CYS HIS ARG ASP ILE LYS PRO GLN SEQRES 16 A 430 ASN LEU LEU LEU ASP PRO ASP THR ALA VAL LEU LYS LEU SEQRES 17 A 430 CYS ASP PHE GLY SER ALA LYS GLN LEU VAL ARG GLY GLU SEQRES 18 A 430 PRO ASN VAL SER TYR ILE CYS SER ARG TYR TYR ARG ALA SEQRES 19 A 430 PRO GLU LEU ILE PHE GLY ALA THR ASP TYR THR SER SER SEQRES 20 A 430 ILE ASP VAL TRP SER ALA GLY CYS VAL LEU ALA GLU LEU SEQRES 21 A 430 LEU LEU GLY GLN PRO ILE PHE PRO GLY ASP SER GLY VAL SEQRES 22 A 430 ASP GLN LEU VAL GLU ILE ILE LYS VAL LEU GLY THR PRO SEQRES 23 A 430 THR ARG GLU GLN ILE ARG GLU MET ASN PRO ASN TYR THR SEQRES 24 A 430 GLU PHE LYS PHE PRO GLN ILE LYS ALA HIS PRO TRP THR SEQRES 25 A 430 LYS VAL PHE ARG PRO ARG THR PRO PRO GLU ALA ILE ALA SEQRES 26 A 430 LEU CYS SER ARG LEU LEU GLU TYR THR PRO THR ALA ARG SEQRES 27 A 430 LEU THR PRO LEU GLU ALA CYS ALA HIS SER PHE PHE ASP SEQRES 28 A 430 GLU LEU ARG ASP PRO ASN VAL LYS LEU PRO ASN GLY ARG SEQRES 29 A 430 ASP THR PRO ALA LEU PHE ASN PHE THR THR GLN GLU LEU SEQRES 30 A 430 SER SER ASN PRO PRO LEU ALA THR ILE LEU ILE PRO PRO SEQRES 31 A 430 HIS ALA ARG ILE GLN ALA ALA ALA SER PRO PRO ALA ASN SEQRES 32 A 430 ALA THR ALA ALA SER ASP THR ASN ALA GLY ASP ARG GLY SEQRES 33 A 430 GLN THR ASN ASN ALA ALA SER ALA SER ALA SER ASN SER SEQRES 34 A 430 THR SEQRES 1 B 430 MET GLU PRO VAL PRO PRO PRO PRO THR PRO ARG SER SER SEQRES 2 B 430 ARG PRO ARG THR THR SER PHE ALA GLU SER CYS LYS PRO SEQRES 3 B 430 VAL GLN GLN PRO SER ALA PHE GLY SER MET LYS VAL SER SEQRES 4 B 430 ILE ASP LYS ASP GLY SER LYS VAL THR THR VAL VAL ALA SEQRES 5 B 430 THR PRO GLY GLN GLY PRO ASP ARG PRO GLN GLU VAL SER SEQRES 6 B 430 TYR THR ASP THR LYS VAL ILE GLY ASN GLY SER PHE GLY SEQRES 7 B 430 VAL VAL TYR GLN ALA LYS LEU CYS ASP SER GLY GLU LEU SEQRES 8 B 430 VAL ALA ILE LYS LYS VAL LEU GLN ASP LYS ARG PHE LYS SEQRES 9 B 430 ASN ARG GLU LEU GLN ILE MET ARG LYS LEU ASP HIS CYS SEQRES 10 B 430 ASN ILE VAL ARG LEU ARG TYR PHE PHE TYR SER SER GLY SEQRES 11 B 430 GLU LYS LYS ASP GLU VAL TYR LEU ASN LEU VAL LEU ASP SEQRES 12 B 430 TYR VAL PRO GLU THR VAL TYR ARG VAL ALA ARG HIS TYR SEQRES 13 B 430 SER ARG ALA LYS GLN THR LEU PRO VAL ILE TYR VAL LYS SEQRES 14 B 430 LEU TYR MET TYR GLN LEU PHE ARG SER LEU ALA TYR ILE SEQRES 15 B 430 HIS SER PHE GLY ILE CYS HIS ARG ASP ILE LYS PRO GLN SEQRES 16 B 430 ASN LEU LEU LEU ASP PRO ASP THR ALA VAL LEU LYS LEU SEQRES 17 B 430 CYS ASP PHE GLY SER ALA LYS GLN LEU VAL ARG GLY GLU SEQRES 18 B 430 PRO ASN VAL SER TYR ILE CYS SER ARG TYR TYR ARG ALA SEQRES 19 B 430 PRO GLU LEU ILE PHE GLY ALA THR ASP TYR THR SER SER SEQRES 20 B 430 ILE ASP VAL TRP SER ALA GLY CYS VAL LEU ALA GLU LEU SEQRES 21 B 430 LEU LEU GLY GLN PRO ILE PHE PRO GLY ASP SER GLY VAL SEQRES 22 B 430 ASP GLN LEU VAL GLU ILE ILE LYS VAL LEU GLY THR PRO SEQRES 23 B 430 THR ARG GLU GLN ILE ARG GLU MET ASN PRO ASN TYR THR SEQRES 24 B 430 GLU PHE LYS PHE PRO GLN ILE LYS ALA HIS PRO TRP THR SEQRES 25 B 430 LYS VAL PHE ARG PRO ARG THR PRO PRO GLU ALA ILE ALA SEQRES 26 B 430 LEU CYS SER ARG LEU LEU GLU TYR THR PRO THR ALA ARG SEQRES 27 B 430 LEU THR PRO LEU GLU ALA CYS ALA HIS SER PHE PHE ASP SEQRES 28 B 430 GLU LEU ARG ASP PRO ASN VAL LYS LEU PRO ASN GLY ARG SEQRES 29 B 430 ASP THR PRO ALA LEU PHE ASN PHE THR THR GLN GLU LEU SEQRES 30 B 430 SER SER ASN PRO PRO LEU ALA THR ILE LEU ILE PRO PRO SEQRES 31 B 430 HIS ALA ARG ILE GLN ALA ALA ALA SER PRO PRO ALA ASN SEQRES 32 B 430 ALA THR ALA ALA SER ASP THR ASN ALA GLY ASP ARG GLY SEQRES 33 B 430 GLN THR ASN ASN ALA ALA SER ALA SER ALA SER ASN SER SEQRES 34 B 430 THR HET MLI A1001 7 HET MLI B1002 7 HETNAM MLI MALONATE ION FORMUL 3 MLI 2(C3 H2 O4 2-) FORMUL 5 HOH *23(H2 O) HELIX 1 1 ASN A 95 LEU A 104 1 10 HELIX 2 2 VAL A 139 ALA A 149 1 11 HELIX 3 3 PRO A 154 PHE A 175 1 22 HELIX 4 4 LYS A 183 GLN A 185 5 3 HELIX 5 5 ASP A 200 ALA A 204 5 5 HELIX 6 6 SER A 219 ARG A 223 5 5 HELIX 7 7 ALA A 224 PHE A 229 1 6 HELIX 8 8 SER A 236 GLY A 253 1 18 HELIX 9 9 SER A 261 GLY A 274 1 14 HELIX 10 10 THR A 277 ASN A 285 1 9 HELIX 11 11 PRO A 300 PHE A 305 1 6 HELIX 12 12 PRO A 310 LEU A 321 1 12 HELIX 13 13 THR A 324 ARG A 328 5 5 HELIX 14 14 THR A 330 ALA A 336 1 7 HELIX 15 15 HIS A 337 PHE A 339 5 3 HELIX 16 16 PHE A 340 ASP A 345 1 6 HELIX 17 17 THR A 363 SER A 368 1 6 HELIX 18 18 ASN A 370 PRO A 372 5 3 HELIX 19 19 LEU A 373 ILE A 378 1 6 HELIX 20 20 ASN B 95 ARG B 102 1 8 HELIX 21 21 VAL B 139 ALA B 149 1 11 HELIX 22 22 PRO B 154 PHE B 175 1 22 HELIX 23 23 LYS B 183 GLN B 185 5 3 HELIX 24 24 ASP B 200 ALA B 204 5 5 HELIX 25 25 ARG B 220 ARG B 223 5 4 HELIX 26 26 ALA B 224 PHE B 229 1 6 HELIX 27 27 SER B 236 GLY B 253 1 18 HELIX 28 28 SER B 261 GLY B 274 1 14 HELIX 29 29 THR B 277 ASN B 285 1 9 HELIX 30 30 PRO B 300 VAL B 304 5 5 HELIX 31 31 PRO B 310 LEU B 321 1 12 HELIX 32 32 THR B 324 ARG B 328 5 5 HELIX 33 33 THR B 330 ALA B 336 1 7 HELIX 34 34 HIS B 337 PHE B 339 5 3 HELIX 35 35 PHE B 340 ASP B 345 1 6 HELIX 36 36 THR B 363 SER B 368 1 6 HELIX 37 37 ASN B 370 PRO B 372 5 3 HELIX 38 38 LEU B 373 ILE B 378 1 6 HELIX 39 39 PRO B 379 ILE B 384 1 6 SHEET 1 AA 8 LYS A 27 SER A 29 0 SHEET 2 AA 8 VAL A 37 PRO A 44 -1 O VAL A 37 N SER A 29 SHEET 3 AA 8 LEU A 112 SER A 118 -1 O PHE A 115 N THR A 43 SHEET 4 AA 8 VAL A 126 ASP A 133 -1 O TYR A 127 N SER A 118 SHEET 5 AA 8 LEU A 81 GLN A 89 -1 O ALA A 83 N LEU A 132 SHEET 6 AA 8 VAL A 69 LEU A 75 -1 O VAL A 69 N LYS A 86 SHEET 7 AA 8 GLN A 52 ASN A 64 -1 O THR A 57 N LYS A 74 SHEET 8 AA 8 LYS A 27 SER A 29 0 SHEET 1 AB 3 GLU A 137 THR A 138 0 SHEET 2 AB 3 LEU A 187 LEU A 189 -1 O LEU A 189 N GLU A 137 SHEET 3 AB 3 LEU A 196 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 AC 2 ILE A 177 CYS A 178 0 SHEET 2 AC 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 SHEET 1 BA 8 MET B 26 ILE B 30 0 SHEET 2 BA 8 LYS B 36 PRO B 44 -1 O VAL B 37 N SER B 29 SHEET 3 BA 8 LEU B 112 SER B 118 -1 O PHE B 115 N THR B 43 SHEET 4 BA 8 TYR B 127 ASP B 133 -1 O TYR B 127 N SER B 118 SHEET 5 BA 8 LEU B 81 LEU B 88 -1 O ALA B 83 N LEU B 132 SHEET 6 BA 8 GLY B 68 LEU B 75 -1 O VAL B 69 N LYS B 86 SHEET 7 BA 8 GLN B 52 GLY B 63 -1 O THR B 57 N LYS B 74 SHEET 8 BA 8 MET B 26 ILE B 30 0 SHEET 1 BB 3 GLU B 137 THR B 138 0 SHEET 2 BB 3 LEU B 187 LEU B 189 -1 O LEU B 189 N GLU B 137 SHEET 3 BB 3 LEU B 196 LEU B 198 -1 O LYS B 197 N LEU B 188 SHEET 1 BC 2 ILE B 177 CYS B 178 0 SHEET 2 BC 2 LYS B 205 GLN B 206 -1 O LYS B 205 N CYS B 178 CISPEP 1 GLY A 34 SER A 35 0 0.71 CISPEP 2 THR A 289 GLU A 290 0 -4.24 CISPEP 3 ASP B 33 GLY B 34 0 0.56 CISPEP 4 GLY B 120 GLU B 121 0 -17.56 CISPEP 5 THR B 289 GLU B 290 0 12.27 CRYST1 82.902 85.883 177.471 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005635 0.00000