HEADER PROTEIN BINDING 24-MAR-15 4YYM TITLE CRYSTAL STRUCTURE OF TAF1 BD2 BROMODOMAIN BOUND TO A BUTYRYLLYSINE TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN (UNP RESIDUES 1497-1638); COMPND 5 SYNONYM: CELL CYCLE GENE 1 PROTEIN, TBP-ASSOCIATED FACTOR 250 KDA, COMPND 6 P250, TRANSCRIPTION INITIATION FACTOR TFIID 250 KDA SUBUNIT, COMPND 7 TAFII250; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE H4; COMPND 11 CHAIN: Z; COMPND 12 FRAGMENT: N-TERMINAL TAIL (UNP RESIDUES 2-12); COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: LYSINE RESIDUES BUTYRYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAF1, BA2R, CCG1, CCGS, TAF2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSF; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS BROMODOMAIN-BUTYRYLLYSINE COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANG,S.BELLON,A.G.COCHRAN,F.POY REVDAT 5 27-SEP-23 4YYM 1 REMARK LINK REVDAT 4 09-MAR-16 4YYM 1 REMARK REVDAT 3 14-OCT-15 4YYM 1 JRNL REVDAT 2 30-SEP-15 4YYM 1 JRNL REVDAT 1 16-SEP-15 4YYM 0 JRNL AUTH E.M.FLYNN,O.W.HUANG,F.POY,M.OPPIKOFER,S.F.BELLON,Y.TANG, JRNL AUTH 2 A.G.COCHRAN JRNL TITL A SUBSET OF HUMAN BROMODOMAINS RECOGNIZES BUTYRYLLYSINE AND JRNL TITL 2 CROTONYLLYSINE HISTONE PEPTIDE MODIFICATIONS. JRNL REF STRUCTURE V. 23 1801 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26365797 JRNL DOI 10.1016/J.STR.2015.08.004 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 47895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3371 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2280 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3092 ; 2.178 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 5.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;41.153 ;26.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;14.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;16.396 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1736 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1500 A 1631 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8344 18.4289 -1.0588 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0807 REMARK 3 T33: 0.0482 T12: 0.0016 REMARK 3 T13: -0.0028 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.6082 L22: 1.0722 REMARK 3 L33: 0.6525 L12: 0.3709 REMARK 3 L13: 0.1877 L23: 0.5283 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.0397 S13: -0.0169 REMARK 3 S21: 0.0430 S22: 0.0053 S23: -0.0762 REMARK 3 S31: 0.0317 S32: 0.0020 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1500 B 1632 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8107 50.3420 -11.8579 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0716 REMARK 3 T33: 0.0472 T12: 0.0055 REMARK 3 T13: -0.0232 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.3686 L22: 1.2118 REMARK 3 L33: 0.5882 L12: -0.3508 REMARK 3 L13: 0.3792 L23: -0.6499 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: 0.0467 S13: 0.0708 REMARK 3 S21: 0.1287 S22: -0.0816 S23: -0.1068 REMARK 3 S31: -0.1058 S32: 0.0180 S33: 0.1205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.94600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EQF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 20 W/V REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.10750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.51050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.02400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.51050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.10750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.02400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1495 REMARK 465 SER A 1496 REMARK 465 PRO A 1497 REMARK 465 LEU A 1498 REMARK 465 LEU A 1499 REMARK 465 GLU A 1632 REMARK 465 SER A 1633 REMARK 465 LEU A 1634 REMARK 465 ASP A 1635 REMARK 465 PRO A 1636 REMARK 465 MET A 1637 REMARK 465 THR A 1638 REMARK 465 GLY B 1495 REMARK 465 SER B 1496 REMARK 465 PRO B 1497 REMARK 465 LEU B 1498 REMARK 465 LEU B 1499 REMARK 465 SER B 1633 REMARK 465 LEU B 1634 REMARK 465 ASP B 1635 REMARK 465 PRO B 1636 REMARK 465 MET B 1637 REMARK 465 THR B 1638 REMARK 465 SER Z 1 REMARK 465 GLY Z 2 REMARK 465 ARG Z 3 REMARK 465 GLY Z 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 1594 OD1 ASN A 1598 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1565 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B1518 -60.62 -120.76 REMARK 500 LYS B1518 -60.62 -107.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1586 OE1 REMARK 620 2 GLU A1586 OE2 50.6 REMARK 620 3 HOH A1830 O 76.0 92.5 REMARK 620 4 ASN B1513 OD1 77.8 99.5 8.1 REMARK 620 5 HOH B1726 O 90.8 86.0 163.9 159.3 REMARK 620 6 HOH B1731 O 130.1 79.5 108.9 114.1 86.6 REMARK 620 7 HOH B1749 O 81.9 131.0 85.7 78.0 83.3 146.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YY4 RELATED DB: PDB REMARK 900 RELATED ID: 4YY6 RELATED DB: PDB REMARK 900 RELATED ID: 4YYD RELATED DB: PDB REMARK 900 RELATED ID: 4YYG RELATED DB: PDB REMARK 900 RELATED ID: 4YYH RELATED DB: PDB REMARK 900 RELATED ID: 4YYI RELATED DB: PDB REMARK 900 RELATED ID: 4YYJ RELATED DB: PDB REMARK 900 RELATED ID: 4YYK RELATED DB: PDB REMARK 900 RELATED ID: 4YYN RELATED DB: PDB DBREF 4YYM A 1497 1638 UNP P21675 TAF1_HUMAN 1497 1638 DBREF 4YYM B 1497 1638 UNP P21675 TAF1_HUMAN 1497 1638 DBREF 4YYM Z 1 11 UNP P62805 H4_HUMAN 2 12 SEQADV 4YYM GLY A 1495 UNP P21675 EXPRESSION TAG SEQADV 4YYM SER A 1496 UNP P21675 EXPRESSION TAG SEQADV 4YYM GLY B 1495 UNP P21675 EXPRESSION TAG SEQADV 4YYM SER B 1496 UNP P21675 EXPRESSION TAG SEQRES 1 A 144 GLY SER PRO LEU LEU ASP ASP ASP ASP GLN VAL ALA PHE SEQRES 2 A 144 SER PHE ILE LEU ASP ASN ILE VAL THR GLN LYS MET MET SEQRES 3 A 144 ALA VAL PRO ASP SER TRP PRO PHE HIS HIS PRO VAL ASN SEQRES 4 A 144 LYS LYS PHE VAL PRO ASP TYR TYR LYS VAL ILE VAL ASN SEQRES 5 A 144 PRO MET ASP LEU GLU THR ILE ARG LYS ASN ILE SER LYS SEQRES 6 A 144 HIS LYS TYR GLN SER ARG GLU SER PHE LEU ASP ASP VAL SEQRES 7 A 144 ASN LEU ILE LEU ALA ASN SER VAL LYS TYR ASN GLY PRO SEQRES 8 A 144 GLU SER GLN TYR THR LYS THR ALA GLN GLU ILE VAL ASN SEQRES 9 A 144 VAL CYS TYR GLN THR LEU THR GLU TYR ASP GLU HIS LEU SEQRES 10 A 144 THR GLN LEU GLU LYS ASP ILE CYS THR ALA LYS GLU ALA SEQRES 11 A 144 ALA LEU GLU GLU ALA GLU LEU GLU SER LEU ASP PRO MET SEQRES 12 A 144 THR SEQRES 1 B 144 GLY SER PRO LEU LEU ASP ASP ASP ASP GLN VAL ALA PHE SEQRES 2 B 144 SER PHE ILE LEU ASP ASN ILE VAL THR GLN LYS MET MET SEQRES 3 B 144 ALA VAL PRO ASP SER TRP PRO PHE HIS HIS PRO VAL ASN SEQRES 4 B 144 LYS LYS PHE VAL PRO ASP TYR TYR LYS VAL ILE VAL ASN SEQRES 5 B 144 PRO MET ASP LEU GLU THR ILE ARG LYS ASN ILE SER LYS SEQRES 6 B 144 HIS LYS TYR GLN SER ARG GLU SER PHE LEU ASP ASP VAL SEQRES 7 B 144 ASN LEU ILE LEU ALA ASN SER VAL LYS TYR ASN GLY PRO SEQRES 8 B 144 GLU SER GLN TYR THR LYS THR ALA GLN GLU ILE VAL ASN SEQRES 9 B 144 VAL CYS TYR GLN THR LEU THR GLU TYR ASP GLU HIS LEU SEQRES 10 B 144 THR GLN LEU GLU LYS ASP ILE CYS THR ALA LYS GLU ALA SEQRES 11 B 144 ALA LEU GLU GLU ALA GLU LEU GLU SER LEU ASP PRO MET SEQRES 12 B 144 THR SEQRES 1 Z 11 SER GLY ARG GLY BTK GLY GLY BTK GLY LEU GLY MODRES 4YYM BTK Z 5 LYS MODIFIED RESIDUE MODRES 4YYM BTK Z 8 LYS MODIFIED RESIDUE HET BTK Z 5 14 HET BTK Z 8 14 HET CA A1701 1 HETNAM BTK N~6~-BUTANOYL-L-LYSINE HETNAM CA CALCIUM ION FORMUL 3 BTK 2(C10 H20 N2 O3) FORMUL 4 CA CA 2+ FORMUL 5 HOH *199(H2 O) HELIX 1 AA1 ASP A 1501 LYS A 1518 1 18 HELIX 2 AA2 SER A 1525 HIS A 1530 5 6 HELIX 3 AA3 ASP A 1539 ILE A 1544 1 6 HELIX 4 AA4 ASP A 1549 LYS A 1559 1 11 HELIX 5 AA5 SER A 1564 GLY A 1584 1 21 HELIX 6 AA6 SER A 1587 TYR A 1607 1 21 HELIX 7 AA7 TYR A 1607 LEU A 1631 1 25 HELIX 8 AA8 ASP B 1501 LYS B 1518 1 18 HELIX 9 AA9 SER B 1525 HIS B 1529 5 5 HELIX 10 AB1 ASP B 1539 ILE B 1544 1 6 HELIX 11 AB2 ASP B 1549 LYS B 1559 1 11 HELIX 12 AB3 SER B 1564 GLY B 1584 1 21 HELIX 13 AB4 SER B 1587 TYR B 1607 1 21 HELIX 14 AB5 TYR B 1607 GLU B 1632 1 26 LINK C BTK Z 5 N GLY Z 6 1555 1555 1.34 LINK C GLY Z 7 N BTK Z 8 1555 1555 1.33 LINK C BTK Z 8 N GLY Z 9 1555 1555 1.34 LINK OE1 GLU A1586 CA CA A1701 1555 1555 2.62 LINK OE2 GLU A1586 CA CA A1701 1555 1555 2.40 LINK CA CA A1701 O HOH A1830 1555 1555 2.37 LINK CA CA A1701 OD1 ASN B1513 2464 1555 2.24 LINK CA CA A1701 O HOH B1726 1555 2465 2.35 LINK CA CA A1701 O HOH B1731 1555 2465 2.40 LINK CA CA A1701 O HOH B1749 1555 2465 2.33 SITE 1 AC1 6 GLU A1586 HOH A1830 ASN B1513 HOH B1726 SITE 2 AC1 6 HOH B1731 HOH B1749 CRYST1 58.215 66.048 81.021 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012342 0.00000