HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-MAR-15 4YUR TITLE CRYSTAL STRUCTURE OF PLK4 KINASE DOMAIN BOUND TO CENTRINONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-275; COMPND 5 SYNONYM: POLO-LIKE KINASE 4,PLK-4,SERINE/THREONINE-PROTEIN KINASE 18, COMPND 6 SERINE/THREONINE-PROTEIN KINASE SAK; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK4, SAK, STK18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA 2 (DE3) KEYWDS TRANSFERASE, PROTEIN KINASE, INHIBITOR, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SHIAU,A.MOTAMEDI REVDAT 2 27-SEP-23 4YUR 1 SOURCE JRNL REMARK REVDAT 1 17-JUN-15 4YUR 0 JRNL AUTH Y.L.WONG,J.V.ANZOLA,R.L.DAVIS,M.YOON,A.MOTAMEDI,A.KROLL, JRNL AUTH 2 C.P.SEO,J.E.HSIA,S.K.KIM,J.W.MITCHELL,B.J.MITCHELL,A.DESAI, JRNL AUTH 3 T.C.GAHMAN,A.K.SHIAU,K.OEGEMA JRNL TITL CELL BIOLOGY. REVERSIBLE CENTRIOLE DEPLETION WITH AN JRNL TITL 2 INHIBITOR OF POLO-LIKE KINASE 4. JRNL REF SCIENCE V. 348 1155 2015 JRNL REFN ESSN 1095-9203 JRNL PMID 25931445 JRNL DOI 10.1126/SCIENCE.AAA5111 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.9202 - 3.8249 1.00 3170 156 0.1809 0.2468 REMARK 3 2 3.8249 - 3.0360 1.00 3080 146 0.2226 0.2775 REMARK 3 3 3.0360 - 2.6500 1.00 3063 167 0.2526 0.3654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1833 REMARK 3 ANGLE : 1.389 2481 REMARK 3 CHIRALITY : 0.071 273 REMARK 3 PLANARITY : 0.004 312 REMARK 3 DIHEDRAL : 12.206 659 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3688 39.6660 48.0084 REMARK 3 T TENSOR REMARK 3 T11: 0.5139 T22: 0.3493 REMARK 3 T33: 0.3438 T12: -0.0112 REMARK 3 T13: -0.0641 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.9460 L22: 3.3157 REMARK 3 L33: 1.8849 L12: -0.9380 REMARK 3 L13: -1.8889 L23: 1.3707 REMARK 3 S TENSOR REMARK 3 S11: 0.2041 S12: 0.4011 S13: 0.4530 REMARK 3 S21: -0.5997 S22: -0.1227 S23: -0.0151 REMARK 3 S31: -0.4678 S32: -0.2451 S33: 0.0035 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4625 13.8582 44.6632 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.3736 REMARK 3 T33: 0.2194 T12: -0.1384 REMARK 3 T13: -0.0464 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 1.7717 L22: 3.8140 REMARK 3 L33: 1.4716 L12: -1.9226 REMARK 3 L13: -1.1618 L23: 1.2122 REMARK 3 S TENSOR REMARK 3 S11: 0.1561 S12: 0.0801 S13: 0.0789 REMARK 3 S21: -0.3239 S22: -0.3316 S23: 0.1061 REMARK 3 S31: -0.2077 S32: 0.2279 S33: -0.1949 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 62.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.20 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.50 REMARK 200 R MERGE FOR SHELL (I) : 2.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3COK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M MGCL2, 30% PEG 400, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.90250 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 62.90250 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.90250 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 62.90250 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 62.90250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 62.90250 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 62.90250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 62.90250 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 62.90250 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 62.90250 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 62.90250 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 62.90250 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 62.90250 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 62.90250 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 62.90250 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 62.90250 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 62.90250 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 62.90250 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 62.90250 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 62.90250 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 62.90250 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 62.90250 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 62.90250 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 62.90250 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 62.90250 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 62.90250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 CYS A 4 REMARK 465 GLY A 156 REMARK 465 LEU A 157 REMARK 465 ALA A 158 REMARK 465 THR A 159 REMARK 465 GLN A 160 REMARK 465 LEU A 161 REMARK 465 LYS A 162 REMARK 465 MET A 163 REMARK 465 PRO A 164 REMARK 465 HIS A 165 REMARK 465 GLU A 166 REMARK 465 LYS A 167 REMARK 465 HIS A 168 REMARK 465 TYR A 169 REMARK 465 THR A 170 REMARK 465 LEU A 171 REMARK 465 CYS A 172 REMARK 465 GLY A 173 REMARK 465 THR A 174 REMARK 465 PRO A 175 REMARK 465 ASN A 176 REMARK 465 TYR A 177 REMARK 465 ILE A 178 REMARK 465 SER A 179 REMARK 465 PRO A 180 REMARK 465 GLU A 181 REMARK 465 ILE A 182 REMARK 465 ALA A 183 REMARK 465 THR A 184 REMARK 465 ARG A 185 REMARK 465 SER A 186 REMARK 465 ALA A 187 REMARK 465 HIS A 188 REMARK 465 ASP A 212 REMARK 465 THR A 213 REMARK 465 ASP A 214 REMARK 465 ARG A 267 REMARK 465 ASN A 268 REMARK 465 SER A 269 REMARK 465 SER A 270 REMARK 465 THR A 271 REMARK 465 LYS A 272 REMARK 465 SER A 273 REMARK 465 LYS A 274 REMARK 465 ASP A 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 GLN A 55 CG CD OE1 NE2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LEU A 133 CG CD1 CD2 REMARK 470 HIS A 134 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 LEU A 190 CG CD1 CD2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 ASP A 193 CG OD1 OD2 REMARK 470 THR A 215 OG1 CG2 REMARK 470 VAL A 216 CG1 CG2 REMARK 470 LEU A 220 CG CD1 CD2 REMARK 470 VAL A 224 CG1 CG2 REMARK 470 ASN A 249 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 133 76.31 -66.16 REMARK 500 HIS A 134 -148.13 -81.06 REMARK 500 ALA A 153 -52.13 -131.67 REMARK 500 ASP A 154 50.59 -104.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4J7 A 1000 DBREF 4YUR A 2 275 UNP O00444 PLK4_HUMAN 2 275 SEQADV 4YUR GLY A -2 UNP O00444 EXPRESSION TAG SEQADV 4YUR PRO A -1 UNP O00444 EXPRESSION TAG SEQADV 4YUR GLY A 0 UNP O00444 EXPRESSION TAG SEQADV 4YUR SER A 1 UNP O00444 EXPRESSION TAG SEQRES 1 A 278 GLY PRO GLY SER ALA THR CYS ILE GLY GLU LYS ILE GLU SEQRES 2 A 278 ASP PHE LYS VAL GLY ASN LEU LEU GLY LYS GLY SER PHE SEQRES 3 A 278 ALA GLY VAL TYR ARG ALA GLU SER ILE HIS THR GLY LEU SEQRES 4 A 278 GLU VAL ALA ILE LYS MET ILE ASP LYS LYS ALA MET TYR SEQRES 5 A 278 LYS ALA GLY MET VAL GLN ARG VAL GLN ASN GLU VAL LYS SEQRES 6 A 278 ILE HIS CYS GLN LEU LYS HIS PRO SER ILE LEU GLU LEU SEQRES 7 A 278 TYR ASN TYR PHE GLU ASP SER ASN TYR VAL TYR LEU VAL SEQRES 8 A 278 LEU GLU MET CYS HIS ASN GLY GLU MET ASN ARG TYR LEU SEQRES 9 A 278 LYS ASN ARG VAL LYS PRO PHE SER GLU ASN GLU ALA ARG SEQRES 10 A 278 HIS PHE MET HIS GLN ILE ILE THR GLY MET LEU TYR LEU SEQRES 11 A 278 HIS SER HIS GLY ILE LEU HIS ARG ASP LEU THR LEU SER SEQRES 12 A 278 ASN LEU LEU LEU THR ARG ASN MET ASN ILE LYS ILE ALA SEQRES 13 A 278 ASP PHE GLY LEU ALA THR GLN LEU LYS MET PRO HIS GLU SEQRES 14 A 278 LYS HIS TYR THR LEU CYS GLY THR PRO ASN TYR ILE SER SEQRES 15 A 278 PRO GLU ILE ALA THR ARG SER ALA HIS GLY LEU GLU SER SEQRES 16 A 278 ASP VAL TRP SER LEU GLY CYS MET PHE TYR THR LEU LEU SEQRES 17 A 278 ILE GLY ARG PRO PRO PHE ASP THR ASP THR VAL LYS ASN SEQRES 18 A 278 THR LEU ASN LYS VAL VAL LEU ALA ASP TYR GLU MET PRO SEQRES 19 A 278 SER PHE LEU SER ILE GLU ALA LYS ASP LEU ILE HIS GLN SEQRES 20 A 278 LEU LEU ARG ARG ASN PRO ALA ASP ARG LEU SER LEU SER SEQRES 21 A 278 SER VAL LEU ASP HIS PRO PHE MET SER ARG ASN SER SER SEQRES 22 A 278 THR LYS SER LYS ASP HET 4J7 A1000 43 HETNAM 4J7 2-({2-FLUORO-4-[(2-FLUORO-3-NITROBENZYL) HETNAM 2 4J7 SULFONYL]PHENYL}SULFANYL)-5-METHOXY-N-(3-METHYL-1H- HETNAM 3 4J7 PYRAZOL-5-YL)-6-(MORPHOLIN-4-YL)PYRIMIDIN-4-AMINE FORMUL 2 4J7 C26 H25 F2 N7 O6 S2 FORMUL 3 HOH *12(H2 O) HELIX 1 AA1 LYS A 8 GLU A 10 5 3 HELIX 2 AA2 LYS A 45 ALA A 51 1 7 HELIX 3 AA3 MET A 53 CYS A 65 1 13 HELIX 4 AA4 MET A 97 ASN A 103 1 7 HELIX 5 AA5 SER A 109 SER A 129 1 21 HELIX 6 AA6 THR A 138 SER A 140 5 3 HELIX 7 AA7 LEU A 190 GLY A 207 1 18 HELIX 8 AA8 VAL A 216 LEU A 225 1 10 HELIX 9 AA9 SER A 235 LEU A 246 1 12 HELIX 10 AB1 ASN A 249 ARG A 253 5 5 HELIX 11 AB2 SER A 255 SER A 266 5 12 SHEET 1 AA1 5 PHE A 12 LYS A 20 0 SHEET 2 AA1 5 ALA A 24 SER A 31 -1 O VAL A 26 N GLY A 19 SHEET 3 AA1 5 GLU A 37 ASP A 44 -1 O MET A 42 N GLY A 25 SHEET 4 AA1 5 TYR A 84 GLU A 90 -1 O LEU A 89 N ALA A 39 SHEET 5 AA1 5 LEU A 75 GLU A 80 -1 N PHE A 79 O TYR A 86 SHEET 1 AA2 3 GLY A 95 GLU A 96 0 SHEET 2 AA2 3 LEU A 142 LEU A 144 -1 O LEU A 144 N GLY A 95 SHEET 3 AA2 3 ILE A 150 ILE A 152 -1 O LYS A 151 N LEU A 143 SITE 1 AC1 14 LEU A 18 GLY A 19 PHE A 23 ARG A 28 SITE 2 AC1 14 ALA A 39 LYS A 41 GLU A 90 MET A 91 SITE 3 AC1 14 CYS A 92 HIS A 93 ASN A 94 GLY A 95 SITE 4 AC1 14 LEU A 143 ALA A 153 CRYST1 125.805 125.805 125.805 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007949 0.00000