HEADER MEMBRANE PROTEIN 25-JUL-13 4X8Y TITLE CRYSTAL STRUCTURE OF HUMAN PGRMC1 CYTOCHROME B5-LIKE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 72-195; COMPND 5 SYNONYM: MPR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PGRMC1, HPR6.6, PGRMC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS RECEPTOR, MEMBRANE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NAKANE,T.YAMAMOTO,T.SHIMAMURA,T.KOBAYASHI,Y.KABE,M.SUEMATSU REVDAT 3 05-FEB-20 4X8Y 1 REMARK REVDAT 2 30-MAR-16 4X8Y 1 JRNL REVDAT 1 23-MAR-16 4X8Y 0 JRNL AUTH Y.KABE,T.NAKANE,I.KOIKE,T.YAMAMOTO,Y.SUGIURA,E.HARADA, JRNL AUTH 2 K.SUGASE,T.SHIMAMURA,M.OHMURA,K.MURAOKA,A.YAMAMOTO,T.UCHIDA, JRNL AUTH 3 S.IWATA,Y.YAMAGUCHI,E.KRAYUKHINA,M.NODA,H.HANDA,K.ISHIMORI, JRNL AUTH 4 S.UCHIYAMA,T.KOBAYASHI,M.SUEMATSU JRNL TITL HAEM-DEPENDENT DIMERIZATION OF PGRMC1/SIGMA-2 RECEPTOR JRNL TITL 2 FACILITATES CANCER PROLIFERATION AND CHEMORESISTANCE JRNL REF NAT COMMUN V. 7 11030 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 26988023 JRNL DOI 10.1038/NCOMMS11030 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1426) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 32283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.670 REMARK 3 FREE R VALUE TEST SET COUNT : 2153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7169 - 4.7876 0.94 2064 148 0.1796 0.1819 REMARK 3 2 4.7876 - 3.8090 0.96 2009 143 0.1549 0.1786 REMARK 3 3 3.8090 - 3.3302 0.97 2021 144 0.1761 0.2006 REMARK 3 4 3.3302 - 3.0269 0.98 2013 146 0.1949 0.2632 REMARK 3 5 3.0269 - 2.8106 0.97 1996 142 0.2009 0.2395 REMARK 3 6 2.8106 - 2.6453 0.99 2016 144 0.2022 0.2391 REMARK 3 7 2.6453 - 2.5131 0.98 1998 143 0.1838 0.1984 REMARK 3 8 2.5131 - 2.4039 0.98 1997 143 0.1780 0.2230 REMARK 3 9 2.4039 - 2.3115 0.99 2010 143 0.1884 0.2092 REMARK 3 10 2.3115 - 2.2318 0.99 1993 144 0.1906 0.2565 REMARK 3 11 2.2318 - 2.1621 0.99 2011 141 0.1902 0.2353 REMARK 3 12 2.1621 - 2.1004 0.99 1999 144 0.1940 0.2460 REMARK 3 13 2.1004 - 2.0452 1.00 1992 143 0.1992 0.2259 REMARK 3 14 2.0452 - 1.9953 0.99 2005 142 0.2225 0.2653 REMARK 3 15 1.9953 - 1.9500 0.99 2006 143 0.2606 0.2638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1923 REMARK 3 ANGLE : 1.164 2621 REMARK 3 CHIRALITY : 0.046 251 REMARK 3 PLANARITY : 0.005 340 REMARK 3 DIHEDRAL : 16.193 693 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 68:126) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7297 -21.2829 71.1688 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.2552 REMARK 3 T33: 0.1883 T12: -0.0356 REMARK 3 T13: 0.0363 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.8369 L22: 3.2172 REMARK 3 L33: 6.4072 L12: -0.4625 REMARK 3 L13: 0.7313 L23: -1.2480 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: -0.0854 S13: 0.0743 REMARK 3 S21: 0.1368 S22: 0.0286 S23: -0.0222 REMARK 3 S31: -0.1319 S32: 0.0474 S33: -0.1370 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 127:141) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3106 -29.4760 61.4954 REMARK 3 T TENSOR REMARK 3 T11: 0.5346 T22: 0.4459 REMARK 3 T33: 0.4719 T12: 0.0146 REMARK 3 T13: 0.0286 T23: 0.0935 REMARK 3 L TENSOR REMARK 3 L11: 3.7682 L22: 6.5135 REMARK 3 L33: 3.4249 L12: -4.7366 REMARK 3 L13: 0.4693 L23: -1.9197 REMARK 3 S TENSOR REMARK 3 S11: -0.3136 S12: -0.5116 S13: -0.9697 REMARK 3 S21: 0.6453 S22: 0.1891 S23: 0.6643 REMARK 3 S31: 0.6336 S32: 0.0113 S33: 0.0764 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 142:179) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4995 -21.5388 62.0698 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.3496 REMARK 3 T33: 0.2564 T12: -0.0275 REMARK 3 T13: 0.0860 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 2.9335 L22: 4.6186 REMARK 3 L33: 6.2885 L12: -0.2234 REMARK 3 L13: 0.8384 L23: 0.5354 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: 0.2235 S13: -0.0935 REMARK 3 S21: -0.1377 S22: -0.1665 S23: -0.4049 REMARK 3 S31: 0.2235 S32: 0.8375 S33: 0.1141 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 65:80) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5385 -1.3931 58.5674 REMARK 3 T TENSOR REMARK 3 T11: 0.6305 T22: 0.5244 REMARK 3 T33: 0.9171 T12: -0.0546 REMARK 3 T13: 0.1288 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.3446 L22: 2.1125 REMARK 3 L33: 5.0873 L12: 1.9580 REMARK 3 L13: -0.4164 L23: -1.1977 REMARK 3 S TENSOR REMARK 3 S11: 0.2692 S12: 0.2620 S13: 1.4638 REMARK 3 S21: 0.2860 S22: 0.0746 S23: 0.8570 REMARK 3 S31: -0.5806 S32: -0.2999 S33: -0.4611 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 81:113) REMARK 3 ORIGIN FOR THE GROUP (A): 66.0205 -0.5932 59.8754 REMARK 3 T TENSOR REMARK 3 T11: 0.5276 T22: 0.4573 REMARK 3 T33: 0.5846 T12: -0.2351 REMARK 3 T13: 0.0956 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 7.9831 L22: 6.4179 REMARK 3 L33: 2.6133 L12: 0.0100 REMARK 3 L13: -2.6816 L23: -2.4235 REMARK 3 S TENSOR REMARK 3 S11: 0.3289 S12: -0.4280 S13: 1.1764 REMARK 3 S21: 0.7282 S22: -0.0643 S23: 0.1603 REMARK 3 S31: -0.4237 S32: 0.5264 S33: -0.2511 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 114:132) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4020 7.1560 50.9242 REMARK 3 T TENSOR REMARK 3 T11: 0.5961 T22: 0.4892 REMARK 3 T33: 0.9618 T12: -0.2064 REMARK 3 T13: 0.1723 T23: 0.1579 REMARK 3 L TENSOR REMARK 3 L11: 2.6046 L22: 5.1091 REMARK 3 L33: 3.8595 L12: 2.3456 REMARK 3 L13: -1.4528 L23: 1.6580 REMARK 3 S TENSOR REMARK 3 S11: 0.3686 S12: 0.6048 S13: 1.6433 REMARK 3 S21: -0.4101 S22: 0.1233 S23: 0.5691 REMARK 3 S31: -0.7183 S32: -0.6642 S33: -0.4290 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 133:137) REMARK 3 ORIGIN FOR THE GROUP (A): 63.0843 14.1401 52.5884 REMARK 3 T TENSOR REMARK 3 T11: 1.0607 T22: 0.8056 REMARK 3 T33: 1.0801 T12: -0.1053 REMARK 3 T13: 0.1040 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 3.2963 L22: 4.4620 REMARK 3 L33: 1.9096 L12: -3.8234 REMARK 3 L13: 1.4685 L23: -1.9158 REMARK 3 S TENSOR REMARK 3 S11: 1.3747 S12: -0.4644 S13: 1.9399 REMARK 3 S21: 0.8159 S22: -0.6401 S23: -1.1184 REMARK 3 S31: -0.0530 S32: -1.5766 S33: -0.7772 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 138:146) REMARK 3 ORIGIN FOR THE GROUP (A): 59.5952 8.9907 43.1077 REMARK 3 T TENSOR REMARK 3 T11: 1.2163 T22: 1.5619 REMARK 3 T33: 1.2304 T12: -0.0019 REMARK 3 T13: 0.0862 T23: 0.5525 REMARK 3 L TENSOR REMARK 3 L11: 2.7338 L22: 3.9913 REMARK 3 L33: 8.1111 L12: -1.8617 REMARK 3 L13: 0.5450 L23: 4.2851 REMARK 3 S TENSOR REMARK 3 S11: 0.2742 S12: -0.0045 S13: 0.7550 REMARK 3 S21: -0.7350 S22: -0.2406 S23: 0.6938 REMARK 3 S31: -0.3080 S32: -1.1894 S33: 0.0029 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 147:173) REMARK 3 ORIGIN FOR THE GROUP (A): 62.8190 -3.5800 47.5583 REMARK 3 T TENSOR REMARK 3 T11: 0.5412 T22: 0.5966 REMARK 3 T33: 0.5458 T12: -0.1973 REMARK 3 T13: 0.0140 T23: 0.0848 REMARK 3 L TENSOR REMARK 3 L11: 5.4443 L22: 5.8114 REMARK 3 L33: 0.3005 L12: -4.9841 REMARK 3 L13: 0.9327 L23: -1.2977 REMARK 3 S TENSOR REMARK 3 S11: -0.1969 S12: 0.9926 S13: -0.0596 REMARK 3 S21: -0.5124 S22: 0.1477 S23: 0.3263 REMARK 3 S31: 0.0745 S32: -0.0973 S33: 0.2688 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 500:500) REMARK 3 ORIGIN FOR THE GROUP (A): 76.9777 -0.2493 51.0709 REMARK 3 T TENSOR REMARK 3 T11: 0.3444 T22: 0.5525 REMARK 3 T33: 0.6743 T12: -0.1664 REMARK 3 T13: 0.1006 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.0171 L22: 0.3051 REMARK 3 L33: 1.3131 L12: -0.0584 REMARK 3 L13: -0.1264 L23: 0.6323 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: 0.3531 S13: 0.2075 REMARK 3 S21: 0.3261 S22: 0.3078 S23: 0.1438 REMARK 3 S31: 0.2512 S32: 0.4126 S33: 0.0550 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 500:500) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8528 -12.3905 60.1043 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.3288 REMARK 3 T33: 0.3015 T12: 0.0438 REMARK 3 T13: 0.0440 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 5.0600 L22: 9.1520 REMARK 3 L33: 9.9562 L12: -3.0704 REMARK 3 L13: 7.0454 L23: -4.6637 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: 0.1448 S13: 0.2819 REMARK 3 S21: 0.1550 S22: -0.1177 S23: -0.0451 REMARK 3 S31: -0.5867 S32: -0.0730 S33: 0.0941 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32298 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 11.19 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.21 REMARK 200 R MERGE FOR SHELL (I) : 1.11400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 83.61500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.73000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.86500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 83.61500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.59500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.59500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.61500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.86500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 83.61500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.73000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 83.61500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 31.73000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 83.61500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 47.59500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 15.86500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.61500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 15.86500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 47.59500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 83.61500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 83.61500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 31.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.61500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.05500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 83.61500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 83.61500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 95.19000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 64 REMARK 465 PRO A 65 REMARK 465 LEU A 66 REMARK 465 GLY A 67 REMARK 465 TYR A 180 REMARK 465 SER A 181 REMARK 465 ASP A 182 REMARK 465 GLU A 183 REMARK 465 GLU A 184 REMARK 465 GLU A 185 REMARK 465 PRO A 186 REMARK 465 LYS A 187 REMARK 465 ASP A 188 REMARK 465 GLU A 189 REMARK 465 SER A 190 REMARK 465 ALA A 191 REMARK 465 ARG A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 ASP A 195 REMARK 465 GLY B 174 REMARK 465 GLU B 175 REMARK 465 GLU B 176 REMARK 465 PRO B 177 REMARK 465 THR B 178 REMARK 465 VAL B 179 REMARK 465 TYR B 180 REMARK 465 SER B 181 REMARK 465 ASP B 182 REMARK 465 GLU B 183 REMARK 465 GLU B 184 REMARK 465 GLU B 185 REMARK 465 PRO B 186 REMARK 465 LYS B 187 REMARK 465 ASP B 188 REMARK 465 GLU B 189 REMARK 465 SER B 190 REMARK 465 ALA B 191 REMARK 465 ARG B 192 REMARK 465 LYS B 193 REMARK 465 ASN B 194 REMARK 465 ASP B 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 70 -61.35 -129.80 REMARK 500 VAL A 84 -53.74 -120.53 REMARK 500 GLU A 138 -118.90 -107.93 REMARK 500 PHE B 128 74.09 56.83 REMARK 500 ASP B 137 -39.73 61.87 REMARK 500 ASP B 141 -57.46 72.53 REMARK 500 TYR B 164 -154.55 -111.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 113 OH REMARK 620 2 HEM A 500 NA 97.7 REMARK 620 3 HEM A 500 NB 97.9 88.9 REMARK 620 4 HEM A 500 NC 93.8 168.4 88.8 REMARK 620 5 HEM A 500 ND 92.9 89.0 169.2 91.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 113 OH REMARK 620 2 HEM B 500 NA 95.1 REMARK 620 3 HEM B 500 NB 92.9 87.8 REMARK 620 4 HEM B 500 NC 92.7 171.9 89.7 REMARK 620 5 HEM B 500 ND 95.8 91.8 171.3 89.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 500 DBREF 4X8Y A 72 195 UNP O00264 PGRC1_HUMAN 72 195 DBREF 4X8Y B 72 195 UNP O00264 PGRC1_HUMAN 72 195 SEQADV 4X8Y GLY A 64 UNP O00264 EXPRESSION TAG SEQADV 4X8Y PRO A 65 UNP O00264 EXPRESSION TAG SEQADV 4X8Y LEU A 66 UNP O00264 EXPRESSION TAG SEQADV 4X8Y GLY A 67 UNP O00264 EXPRESSION TAG SEQADV 4X8Y SER A 68 UNP O00264 EXPRESSION TAG SEQADV 4X8Y PRO A 69 UNP O00264 EXPRESSION TAG SEQADV 4X8Y GLU A 70 UNP O00264 EXPRESSION TAG SEQADV 4X8Y PHE A 71 UNP O00264 EXPRESSION TAG SEQADV 4X8Y GLY B 64 UNP O00264 EXPRESSION TAG SEQADV 4X8Y PRO B 65 UNP O00264 EXPRESSION TAG SEQADV 4X8Y LEU B 66 UNP O00264 EXPRESSION TAG SEQADV 4X8Y GLY B 67 UNP O00264 EXPRESSION TAG SEQADV 4X8Y SER B 68 UNP O00264 EXPRESSION TAG SEQADV 4X8Y PRO B 69 UNP O00264 EXPRESSION TAG SEQADV 4X8Y GLU B 70 UNP O00264 EXPRESSION TAG SEQADV 4X8Y PHE B 71 UNP O00264 EXPRESSION TAG SEQRES 1 A 132 GLY PRO LEU GLY SER PRO GLU PHE ASP PHE THR PRO ALA SEQRES 2 A 132 GLU LEU ARG ARG PHE ASP GLY VAL GLN ASP PRO ARG ILE SEQRES 3 A 132 LEU MET ALA ILE ASN GLY LYS VAL PHE ASP VAL THR LYS SEQRES 4 A 132 GLY ARG LYS PHE TYR GLY PRO GLU GLY PRO TYR GLY VAL SEQRES 5 A 132 PHE ALA GLY ARG ASP ALA SER ARG GLY LEU ALA THR PHE SEQRES 6 A 132 CYS LEU ASP LYS GLU ALA LEU LYS ASP GLU TYR ASP ASP SEQRES 7 A 132 LEU SER ASP LEU THR ALA ALA GLN GLN GLU THR LEU SER SEQRES 8 A 132 ASP TRP GLU SER GLN PHE THR PHE LYS TYR HIS HIS VAL SEQRES 9 A 132 GLY LYS LEU LEU LYS GLU GLY GLU GLU PRO THR VAL TYR SEQRES 10 A 132 SER ASP GLU GLU GLU PRO LYS ASP GLU SER ALA ARG LYS SEQRES 11 A 132 ASN ASP SEQRES 1 B 132 GLY PRO LEU GLY SER PRO GLU PHE ASP PHE THR PRO ALA SEQRES 2 B 132 GLU LEU ARG ARG PHE ASP GLY VAL GLN ASP PRO ARG ILE SEQRES 3 B 132 LEU MET ALA ILE ASN GLY LYS VAL PHE ASP VAL THR LYS SEQRES 4 B 132 GLY ARG LYS PHE TYR GLY PRO GLU GLY PRO TYR GLY VAL SEQRES 5 B 132 PHE ALA GLY ARG ASP ALA SER ARG GLY LEU ALA THR PHE SEQRES 6 B 132 CYS LEU ASP LYS GLU ALA LEU LYS ASP GLU TYR ASP ASP SEQRES 7 B 132 LEU SER ASP LEU THR ALA ALA GLN GLN GLU THR LEU SER SEQRES 8 B 132 ASP TRP GLU SER GLN PHE THR PHE LYS TYR HIS HIS VAL SEQRES 9 B 132 GLY LYS LEU LEU LYS GLU GLY GLU GLU PRO THR VAL TYR SEQRES 10 B 132 SER ASP GLU GLU GLU PRO LYS ASP GLU SER ALA ARG LYS SEQRES 11 B 132 ASN ASP HET HEM A 500 43 HET HEM B 500 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *109(H2 O) HELIX 1 AA1 THR A 74 ARG A 79 1 6 HELIX 2 AA2 GLY A 103 GLY A 108 1 6 HELIX 3 AA3 TYR A 113 ALA A 117 5 5 HELIX 4 AA4 ALA A 121 PHE A 128 1 8 HELIX 5 AA5 ASP A 131 LEU A 135 5 5 HELIX 6 AA6 ASP A 141 LEU A 145 5 5 HELIX 7 AA7 THR A 146 TYR A 164 1 19 HELIX 8 AA8 SER B 68 ASP B 72 5 5 HELIX 9 AA9 THR B 74 ARG B 79 1 6 HELIX 10 AB1 GLY B 103 GLY B 108 1 6 HELIX 11 AB2 TYR B 113 ALA B 117 5 5 HELIX 12 AB3 ALA B 121 PHE B 128 1 8 HELIX 13 AB4 ASP B 131 LEU B 135 5 5 HELIX 14 AB5 THR B 146 TYR B 164 1 19 SHEET 1 AA1 3 LEU A 90 ILE A 93 0 SHEET 2 AA1 3 LYS A 96 ASP A 99 -1 O PHE A 98 N MET A 91 SHEET 3 AA1 3 HIS A 165 LYS A 169 -1 O GLY A 168 N VAL A 97 SHEET 1 AA2 3 LEU B 90 ILE B 93 0 SHEET 2 AA2 3 LYS B 96 ASP B 99 -1 O PHE B 98 N MET B 91 SHEET 3 AA2 3 HIS B 165 LYS B 169 -1 O HIS B 165 N ASP B 99 SSBOND 1 CYS A 129 CYS A 129 1555 5556 2.10 SSBOND 2 CYS B 129 CYS B 129 1555 16556 2.06 LINK OH TYR A 113 FE HEM A 500 1555 1555 2.24 LINK OH TYR B 113 FE HEM B 500 1555 1555 2.22 SITE 1 AC1 14 LYS A 105 PHE A 106 TYR A 107 TYR A 113 SITE 2 AC1 14 GLY A 124 CYS A 129 TRP A 156 LYS A 163 SITE 3 AC1 14 TYR A 164 GLY B 67 SER B 68 PRO B 69 SITE 4 AC1 14 GLU B 70 HOH B 610 SITE 1 AC2 13 PHE B 106 TYR B 107 TYR B 113 GLY B 124 SITE 2 AC2 13 LEU B 125 PHE B 128 CYS B 129 LEU B 130 SITE 3 AC2 13 TRP B 156 LYS B 163 TYR B 164 HOH B 603 SITE 4 AC2 13 HOH B 621 CRYST1 167.230 167.230 63.460 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015758 0.00000