HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-AUG-13 4MHA TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE TITLE 2 TYROSINE-PROTEIN KINASE MER IN COMPLEX WITH INHIBITOR UNC1817 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 570-864; COMPND 5 SYNONYM: PROTO-ONCOGENE C-MER, RECEPTOR TYROSINE KINASE MERTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MER, MERTK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TYROSINE KINASE, ACUTE LYMPHOBLASTIC LEUKEMIA, RATIONAL STRUCTURE- KEYWDS 2 BASED DRUG DESIGN, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,A.MCIVER,M.A.STASHKO,D.DERYCKERE,B.R.BRANCHFORD,D.HUNTER, AUTHOR 2 D.B.KIREEV,D.B.M.MILEY,J.NORRIS-DROUIN,W.M.STEWART,M.LEE,S.SATHER, AUTHOR 3 Y.ZHOU,J.A.DIPAOLA,M.MACHIUS,W.P.JANZEN,H.S.EARP,D.K.GRAHAM,S.FRYE, AUTHOR 4 X.WANG REVDAT 3 20-SEP-23 4MHA 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4MHA 1 REMARK REVDAT 1 21-MAY-14 4MHA 0 JRNL AUTH W.ZHANG,A.L.MCIVER,M.A.STASHKO,D.DERYCKERE,B.R.BRANCHFORD, JRNL AUTH 2 D.HUNTER,D.KIREEV,M.J.MILEY,J.NORRIS-DROUIN,W.M.STEWART, JRNL AUTH 3 M.LEE,S.SATHER,Y.ZHOU,J.A.DI PAOLA,M.MACHIUS,W.P.JANZEN, JRNL AUTH 4 H.S.EARP,D.K.GRAHAM,S.V.FRYE,X.WANG JRNL TITL DISCOVERY OF MER SPECIFIC TYROSINE KINASE INHIBITORS FOR THE JRNL TITL 2 TREATMENT AND PREVENTION OF THROMBOSIS. JRNL REF J.MED.CHEM. V. 56 9693 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 24219778 JRNL DOI 10.1021/JM4013888 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1468) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 16853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0660 - 5.9199 1.00 1530 171 0.2313 0.2513 REMARK 3 2 5.9199 - 4.7012 1.00 1497 166 0.2305 0.2781 REMARK 3 3 4.7012 - 4.1076 1.00 1491 166 0.2098 0.2614 REMARK 3 4 4.1076 - 3.7323 1.00 1479 165 0.2181 0.2890 REMARK 3 5 3.7323 - 3.4650 1.00 1494 166 0.2350 0.3210 REMARK 3 6 3.4650 - 3.2608 0.98 1438 159 0.2591 0.3501 REMARK 3 7 3.2608 - 3.0975 0.92 1388 154 0.2819 0.3024 REMARK 3 8 3.0975 - 2.9627 0.85 1252 139 0.2807 0.3197 REMARK 3 9 2.9627 - 2.8487 0.77 1125 125 0.2815 0.3160 REMARK 3 10 2.8487 - 2.7504 0.67 994 111 0.2798 0.3438 REMARK 3 11 2.7504 - 2.6645 0.59 878 97 0.2681 0.2978 REMARK 3 12 2.6645 - 2.5900 0.41 601 67 0.2608 0.3650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4202 REMARK 3 ANGLE : 0.477 5681 REMARK 3 CHIRALITY : 0.022 633 REMARK 3 PLANARITY : 0.002 708 REMARK 3 DIHEDRAL : 9.080 1598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19608 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 40.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 32.5 MG/ML IN 20 MM TRIS PH REMARK 280 8.0, 500MM SODIUM CHLORIDE, 2MM BETA-MERCAPTOETHANOL, INCUBATED REMARK 280 WITH INHIBITOR (2.5 MM FINAL CONCENTRATION) OVERNIGHT, MIXED 1:1 REMARK 280 WITH CRYSTALLIZATION SOLUTION (27-33% (V/V) PEG400, 200 MM REMARK 280 MAGNESIUM CHLORIDE, 100 MM TRIS PH 8.5), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 552 REMARK 465 GLY A 553 REMARK 465 SER A 554 REMARK 465 SER A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 HIS A 561 REMARK 465 SER A 562 REMARK 465 SER A 563 REMARK 465 GLY A 564 REMARK 465 LEU A 565 REMARK 465 VAL A 566 REMARK 465 PRO A 567 REMARK 465 ARG A 568 REMARK 465 GLY A 569 REMARK 465 SER A 570 REMARK 465 GLU A 571 REMARK 465 GLU A 572 REMARK 465 LEU A 573 REMARK 465 GLN A 574 REMARK 465 ASN A 575 REMARK 465 LYS A 576 REMARK 465 LEU A 577 REMARK 465 GLU A 578 REMARK 465 ASP A 579 REMARK 465 GLY A 596 REMARK 465 GLU A 597 REMARK 465 PHE A 598 REMARK 465 MET A 659 REMARK 465 SER A 660 REMARK 465 SER A 661 REMARK 465 GLN A 662 REMARK 465 GLY A 663 REMARK 465 ILE A 664 REMARK 465 LEU A 744 REMARK 465 SER A 745 REMARK 465 LYS A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 SER A 750 REMARK 465 GLY A 751 REMARK 465 ASP A 752 REMARK 465 TYR A 753 REMARK 465 TYR A 754 REMARK 465 ARG A 755 REMARK 465 GLN A 756 REMARK 465 GLY A 757 REMARK 465 ARG A 758 REMARK 465 ILE A 759 REMARK 465 ALA A 760 REMARK 465 LYS A 761 REMARK 465 MET A 762 REMARK 465 VAL A 864 REMARK 465 MET B 552 REMARK 465 GLY B 553 REMARK 465 SER B 554 REMARK 465 SER B 555 REMARK 465 HIS B 556 REMARK 465 HIS B 557 REMARK 465 HIS B 558 REMARK 465 HIS B 559 REMARK 465 HIS B 560 REMARK 465 HIS B 561 REMARK 465 SER B 562 REMARK 465 SER B 563 REMARK 465 GLY B 564 REMARK 465 LEU B 565 REMARK 465 VAL B 566 REMARK 465 PRO B 567 REMARK 465 ARG B 568 REMARK 465 GLY B 569 REMARK 465 SER B 570 REMARK 465 GLU B 571 REMARK 465 GLU B 572 REMARK 465 LEU B 573 REMARK 465 GLN B 574 REMARK 465 ASN B 575 REMARK 465 LYS B 576 REMARK 465 MET B 621 REMARK 465 LYS B 622 REMARK 465 LEU B 623 REMARK 465 ASP B 624 REMARK 465 ASN B 625 REMARK 465 SER B 626 REMARK 465 SER B 627 REMARK 465 GLN B 628 REMARK 465 ARG B 629 REMARK 465 GLU B 630 REMARK 465 ILE B 631 REMARK 465 GLU B 632 REMARK 465 GLU B 633 REMARK 465 PHE B 634 REMARK 465 LEU B 635 REMARK 465 SER B 636 REMARK 465 GLU B 637 REMARK 465 ALA B 638 REMARK 465 ALA B 639 REMARK 465 CYS B 640 REMARK 465 GLY B 743 REMARK 465 LEU B 744 REMARK 465 SER B 745 REMARK 465 LYS B 746 REMARK 465 LYS B 747 REMARK 465 ILE B 748 REMARK 465 TYR B 749 REMARK 465 SER B 750 REMARK 465 GLY B 751 REMARK 465 ASP B 752 REMARK 465 TYR B 753 REMARK 465 TYR B 754 REMARK 465 ARG B 755 REMARK 465 GLN B 756 REMARK 465 GLY B 757 REMARK 465 ARG B 758 REMARK 465 ILE B 759 REMARK 465 ALA B 760 REMARK 465 LYS B 761 REMARK 465 MET B 762 REMARK 465 ASP B 863 REMARK 465 VAL B 864 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 628 36.21 -90.40 REMARK 500 THR A 690 -54.06 66.70 REMARK 500 HIS A 694 108.26 -52.29 REMARK 500 ASP A 723 45.55 -167.39 REMARK 500 THR A 778 -169.38 -115.10 REMARK 500 GLU B 597 -80.13 58.52 REMARK 500 THR B 690 -57.13 64.56 REMARK 500 HIS B 694 109.28 -55.08 REMARK 500 ASP B 723 53.39 -168.50 REMARK 500 ARG B 775 76.30 -69.98 REMARK 500 TYR B 801 70.37 56.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 728 OD1 REMARK 620 2 HOH B1007 O 74.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4MH A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4MH B 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M3Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE REMARK 900 TYROSINE-PROTEIN KINASE MER IN COMPLEX WITH INHIBITOR UNC1917 REMARK 900 RELATED ID: 3TCP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE REMARK 900 TYROSINE-PROTEIN KINASE MER IN COMPLEX WITH INHIBITOR UNC569 REMARK 900 RELATED ID: 2BRB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE REMARK 900 TYROSINE-PROTEIN KINASE MER IN COMPLEX WITH ADP REMARK 900 RELATED ID: 3BPR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE REMARK 900 TYROSINE-PROTEIN KINASE MER IN COMPLEX WITH INHIBITOR C52 REMARK 900 RELATED ID: 2POC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE REMARK 900 TYROSINE-PROTEIN KINASE MER REMARK 900 RELATED ID: 4MH7 RELATED DB: PDB DBREF 4MHA A 570 864 UNP Q12866 MERTK_HUMAN 570 864 DBREF 4MHA B 570 864 UNP Q12866 MERTK_HUMAN 570 864 SEQADV 4MHA MET A 552 UNP Q12866 EXPRESSION TAG SEQADV 4MHA GLY A 553 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER A 554 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER A 555 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS A 556 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS A 557 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS A 558 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS A 559 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS A 560 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS A 561 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER A 562 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER A 563 UNP Q12866 EXPRESSION TAG SEQADV 4MHA GLY A 564 UNP Q12866 EXPRESSION TAG SEQADV 4MHA LEU A 565 UNP Q12866 EXPRESSION TAG SEQADV 4MHA VAL A 566 UNP Q12866 EXPRESSION TAG SEQADV 4MHA PRO A 567 UNP Q12866 EXPRESSION TAG SEQADV 4MHA ARG A 568 UNP Q12866 EXPRESSION TAG SEQADV 4MHA GLY A 569 UNP Q12866 EXPRESSION TAG SEQADV 4MHA MET B 552 UNP Q12866 EXPRESSION TAG SEQADV 4MHA GLY B 553 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER B 554 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER B 555 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS B 556 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS B 557 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS B 558 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS B 559 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS B 560 UNP Q12866 EXPRESSION TAG SEQADV 4MHA HIS B 561 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER B 562 UNP Q12866 EXPRESSION TAG SEQADV 4MHA SER B 563 UNP Q12866 EXPRESSION TAG SEQADV 4MHA GLY B 564 UNP Q12866 EXPRESSION TAG SEQADV 4MHA LEU B 565 UNP Q12866 EXPRESSION TAG SEQADV 4MHA VAL B 566 UNP Q12866 EXPRESSION TAG SEQADV 4MHA PRO B 567 UNP Q12866 EXPRESSION TAG SEQADV 4MHA ARG B 568 UNP Q12866 EXPRESSION TAG SEQADV 4MHA GLY B 569 UNP Q12866 EXPRESSION TAG SEQRES 1 A 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 313 LEU VAL PRO ARG GLY SER GLU GLU LEU GLN ASN LYS LEU SEQRES 3 A 313 GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU GLY SEQRES 4 A 313 LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET GLU SEQRES 5 A 313 GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS VAL SEQRES 6 A 313 ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN ARG SEQRES 7 A 313 GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET LYS SEQRES 8 A 313 ASP PHE SER HIS PRO ASN VAL ILE ARG LEU LEU GLY VAL SEQRES 9 A 313 CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO MET SEQRES 10 A 313 VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS THR SEQRES 11 A 313 TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS HIS SEQRES 12 A 313 ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP ILE SEQRES 13 A 313 ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE LEU SEQRES 14 A 313 HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG ASP SEQRES 15 A 313 ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER LYS SEQRES 16 A 313 LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG ILE SEQRES 17 A 313 ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER LEU SEQRES 18 A 313 ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP ALA SEQRES 19 A 313 PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY MET SEQRES 20 A 313 THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR ASP SEQRES 21 A 313 TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU ASP SEQRES 22 A 313 CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS TRP SEQRES 23 A 313 ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL LEU SEQRES 24 A 313 ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO ASP SEQRES 25 A 313 VAL SEQRES 1 B 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 313 LEU VAL PRO ARG GLY SER GLU GLU LEU GLN ASN LYS LEU SEQRES 3 B 313 GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU GLY SEQRES 4 B 313 LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET GLU SEQRES 5 B 313 GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS VAL SEQRES 6 B 313 ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN ARG SEQRES 7 B 313 GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET LYS SEQRES 8 B 313 ASP PHE SER HIS PRO ASN VAL ILE ARG LEU LEU GLY VAL SEQRES 9 B 313 CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO MET SEQRES 10 B 313 VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS THR SEQRES 11 B 313 TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS HIS SEQRES 12 B 313 ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP ILE SEQRES 13 B 313 ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE LEU SEQRES 14 B 313 HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG ASP SEQRES 15 B 313 ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER LYS SEQRES 16 B 313 LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG ILE SEQRES 17 B 313 ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER LEU SEQRES 18 B 313 ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP ALA SEQRES 19 B 313 PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY MET SEQRES 20 B 313 THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR ASP SEQRES 21 B 313 TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU ASP SEQRES 22 B 313 CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS TRP SEQRES 23 B 313 ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL LEU SEQRES 24 B 313 ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO ASP SEQRES 25 B 313 VAL HET CL A 901 1 HET CL A 902 1 HET CL A 903 1 HET 4MH A 904 65 HET CL B 901 1 HET CL B 902 1 HET CL B 903 1 HET MG B 904 1 HET 4MH B 905 65 HETNAM CL CHLORIDE ION HETNAM 4MH 2-(BUTYLAMINO)-4-[(TRANS-4-HYDROXYCYCLOHEXYL)AMINO]-N- HETNAM 2 4MH (4-SULFAMOYLBENZYL)PYRIMIDINE-5-CARBOXAMIDE HETNAM MG MAGNESIUM ION FORMUL 3 CL 6(CL 1-) FORMUL 6 4MH 2(C22 H32 N6 O4 S) FORMUL 10 MG MG 2+ FORMUL 12 HOH *23(H2 O) HELIX 1 1 ASP A 583 ASN A 585 5 3 HELIX 2 2 ARG A 629 PHE A 644 1 16 HELIX 3 3 ASP A 678 ARG A 687 1 10 HELIX 4 4 PRO A 696 ARG A 717 1 22 HELIX 5 5 PRO A 763 ALA A 768 5 6 HELIX 6 6 ILE A 769 ASP A 774 1 6 HELIX 7 7 THR A 778 THR A 795 1 18 HELIX 8 8 GLU A 808 HIS A 815 1 8 HELIX 9 9 LEU A 826 CYS A 836 1 11 HELIX 10 10 ASP A 840 ARG A 844 5 5 HELIX 11 11 THR A 846 SER A 860 1 15 HELIX 12 12 ASP B 583 ASN B 585 5 3 HELIX 13 13 ASP B 678 SER B 686 1 9 HELIX 14 14 PRO B 696 ARG B 717 1 22 HELIX 15 15 ALA B 725 ARG B 727 5 3 HELIX 16 16 ALA B 768 ASP B 774 1 7 HELIX 17 17 THR B 778 THR B 795 1 18 HELIX 18 18 GLN B 805 HIS B 807 5 3 HELIX 19 19 GLU B 808 HIS B 815 1 8 HELIX 20 20 LEU B 826 CYS B 836 1 11 HELIX 21 21 ASP B 840 ARG B 844 5 5 HELIX 22 22 THR B 846 LEU B 861 1 16 SHEET 1 A 5 LEU A 587 GLY A 594 0 SHEET 2 A 5 VAL A 601 LYS A 607 -1 O VAL A 601 N GLY A 594 SHEET 3 A 5 SER A 613 THR A 620 -1 O VAL A 618 N MET A 602 SHEET 4 A 5 PRO A 667 PRO A 672 -1 O LEU A 671 N ALA A 617 SHEET 5 A 5 GLY A 654 ILE A 657 -1 N GLY A 654 O ILE A 670 SHEET 1 B 2 MET A 730 LEU A 731 0 SHEET 2 B 2 VAL A 737 CYS A 738 -1 O CYS A 738 N MET A 730 SHEET 1 C 5 LEU B 587 GLY B 596 0 SHEET 2 C 5 GLY B 599 LYS B 607 -1 O VAL B 601 N GLY B 594 SHEET 3 C 5 SER B 613 LYS B 619 -1 O VAL B 618 N MET B 602 SHEET 4 C 5 PRO B 665 PRO B 672 -1 O LEU B 671 N ALA B 617 SHEET 5 C 5 GLY B 654 MET B 659 -1 N CYS B 656 O MET B 668 SHEET 1 D 2 CYS B 729 LEU B 731 0 SHEET 2 D 2 VAL B 737 VAL B 739 -1 O CYS B 738 N MET B 730 LINK OD1 ASN B 728 MG MG B 904 1555 1555 2.31 LINK MG MG B 904 O HOH B1007 1555 1555 2.19 SITE 1 AC1 3 GLY A 797 ARG B 687 HOH B1002 SITE 1 AC2 3 PRO A 802 LEU A 819 LYS A 820 SITE 1 AC3 2 ARG A 584 LEU A 589 SITE 1 AC4 10 LEU A 593 ALA A 617 ILE A 650 PRO A 672 SITE 2 AC4 10 PHE A 673 MET A 674 LYS A 675 GLY A 677 SITE 3 AC4 10 MET A 730 ASP A 741 SITE 1 AC5 3 PRO B 802 LEU B 819 LYS B 820 SITE 1 AC6 1 TYR B 682 SITE 1 AC7 3 ARG B 584 ILE B 588 LEU B 589 SITE 1 AC8 4 ASN B 728 ASP B 741 4MH B 905 HOH B1007 SITE 1 AC9 12 LEU B 593 GLY B 594 GLU B 595 GLU B 603 SITE 2 AC9 12 ALA B 617 ILE B 650 LEU B 671 PRO B 672 SITE 3 AC9 12 MET B 674 LYS B 675 MET B 730 MG B 904 CRYST1 51.142 91.460 69.932 90.00 100.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019553 0.000000 0.003528 0.00000 SCALE2 0.000000 0.010934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014531 0.00000