HEADER OXIDOREDUCTASE 17-APR-13 4K7O TITLE HUMAN PEROXIREDOXIN 5 WITH A FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 54-214; COMPND 5 SYNONYM: ALU COREPRESSOR 1, ANTIOXIDANT ENZYME B166, AOEB166, LIVER COMPND 6 TISSUE 2D-PAGE SPOT 71B, PLP, PEROXIREDOXIN V, PRX-V, PEROXISOMAL COMPND 7 ANTIOXIDANT ENZYME, TPX TYPE VI, THIOREDOXIN PEROXIDASE PMP20, COMPND 8 THIOREDOXIN REDUCTASE; COMPND 9 EC: 1.11.1.15; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRDX5, ACR1, SBBI10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, CYTOSOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.GUICHOU REVDAT 3 20-MAR-24 4K7O 1 REMARK SEQADV REVDAT 2 30-JUL-14 4K7O 1 JRNL REVDAT 1 23-APR-14 4K7O 0 JRNL AUTH C.AGUIRRE,T.T.BRINK,J.F.GUICHOU,O.CALA,I.KRIMM JRNL TITL COMPARING BINDING MODES OF ANALOGOUS FRAGMENTS USING NMR IN JRNL TITL 2 FRAGMENT-BASED DRUG DESIGN: APPLICATION TO PRDX5 JRNL REF PLOS ONE V. 9 02300 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25025339 JRNL DOI 10.1371/JOURNAL.PONE.0102300 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 6.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3571 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70000 REMARK 3 B22 (A**2) : -1.53000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 65.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 65.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3350, 0.1M SODIUM CITRATE REMARK 280 BUFFER, 0.2M POTASSIUM SODIUM TARTRATE, 5MM 1,4-DITHIO-DL- REMARK 280 THREITOL, 0.02%(W/V) SODIUM AZIDE, PH 5.3, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.48000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.48000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.35000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.48000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.77500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.35000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.48000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.77500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.35000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2046 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 432 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 SER B 0 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 SER C 0 REMARK 465 ALA C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2142 O HOH A 2198 1.92 REMARK 500 O HOH C 401 O HOH C 402 2.10 REMARK 500 O HOH A 2065 O HOH A 2196 2.12 REMARK 500 O HOH A 2071 O HOH A 2190 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -54.39 -125.49 REMARK 500 ASP A 113 -158.33 -81.14 REMARK 500 THR A 147 -17.40 -141.69 REMARK 500 THR A 150 -95.71 -133.41 REMARK 500 THR B 50 -59.65 -121.66 REMARK 500 ASP B 113 -156.42 -77.44 REMARK 500 ASP B 134 49.89 34.64 REMARK 500 THR B 150 -93.85 -132.57 REMARK 500 THR C 150 -99.22 -136.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EKZ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EKZ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EKZ C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K7I RELATED DB: PDB REMARK 900 RELATED ID: 4K7N RELATED DB: PDB REMARK 900 RELATED ID: 4MMM RELATED DB: PDB DBREF 4K7O A 1 161 UNP P30044 PRDX5_HUMAN 54 214 DBREF 4K7O B 1 161 UNP P30044 PRDX5_HUMAN 54 214 DBREF 4K7O C 1 161 UNP P30044 PRDX5_HUMAN 54 214 SEQADV 4K7O HIS A -6 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS A -5 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS A -4 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS A -3 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS A -2 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS A -1 UNP P30044 EXPRESSION TAG SEQADV 4K7O SER A 0 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS B -6 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS B -5 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS B -4 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS B -3 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS B -2 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS B -1 UNP P30044 EXPRESSION TAG SEQADV 4K7O SER B 0 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS C -6 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS C -5 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS C -4 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS C -3 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS C -2 UNP P30044 EXPRESSION TAG SEQADV 4K7O HIS C -1 UNP P30044 EXPRESSION TAG SEQADV 4K7O SER C 0 UNP P30044 EXPRESSION TAG SEQRES 1 A 168 HIS HIS HIS HIS HIS HIS SER ALA PRO ILE LYS VAL GLY SEQRES 2 A 168 ASP ALA ILE PRO ALA VAL GLU VAL PHE GLU GLY GLU PRO SEQRES 3 A 168 GLY ASN LYS VAL ASN LEU ALA GLU LEU PHE LYS GLY LYS SEQRES 4 A 168 LYS GLY VAL LEU PHE GLY VAL PRO GLY ALA PHE THR PRO SEQRES 5 A 168 GLY CYS SER LYS THR HIS LEU PRO GLY PHE VAL GLU GLN SEQRES 6 A 168 ALA GLU ALA LEU LYS ALA LYS GLY VAL GLN VAL VAL ALA SEQRES 7 A 168 CYS LEU SER VAL ASN ASP ALA PHE VAL THR GLY GLU TRP SEQRES 8 A 168 GLY ARG ALA HIS LYS ALA GLU GLY LYS VAL ARG LEU LEU SEQRES 9 A 168 ALA ASP PRO THR GLY ALA PHE GLY LYS GLU THR ASP LEU SEQRES 10 A 168 LEU LEU ASP ASP SER LEU VAL SER ILE PHE GLY ASN ARG SEQRES 11 A 168 ARG LEU LYS ARG PHE SER MET VAL VAL GLN ASP GLY ILE SEQRES 12 A 168 VAL LYS ALA LEU ASN VAL GLU PRO ASP GLY THR GLY LEU SEQRES 13 A 168 THR CYS SER LEU ALA PRO ASN ILE ILE SER GLN LEU SEQRES 1 B 168 HIS HIS HIS HIS HIS HIS SER ALA PRO ILE LYS VAL GLY SEQRES 2 B 168 ASP ALA ILE PRO ALA VAL GLU VAL PHE GLU GLY GLU PRO SEQRES 3 B 168 GLY ASN LYS VAL ASN LEU ALA GLU LEU PHE LYS GLY LYS SEQRES 4 B 168 LYS GLY VAL LEU PHE GLY VAL PRO GLY ALA PHE THR PRO SEQRES 5 B 168 GLY CYS SER LYS THR HIS LEU PRO GLY PHE VAL GLU GLN SEQRES 6 B 168 ALA GLU ALA LEU LYS ALA LYS GLY VAL GLN VAL VAL ALA SEQRES 7 B 168 CYS LEU SER VAL ASN ASP ALA PHE VAL THR GLY GLU TRP SEQRES 8 B 168 GLY ARG ALA HIS LYS ALA GLU GLY LYS VAL ARG LEU LEU SEQRES 9 B 168 ALA ASP PRO THR GLY ALA PHE GLY LYS GLU THR ASP LEU SEQRES 10 B 168 LEU LEU ASP ASP SER LEU VAL SER ILE PHE GLY ASN ARG SEQRES 11 B 168 ARG LEU LYS ARG PHE SER MET VAL VAL GLN ASP GLY ILE SEQRES 12 B 168 VAL LYS ALA LEU ASN VAL GLU PRO ASP GLY THR GLY LEU SEQRES 13 B 168 THR CYS SER LEU ALA PRO ASN ILE ILE SER GLN LEU SEQRES 1 C 168 HIS HIS HIS HIS HIS HIS SER ALA PRO ILE LYS VAL GLY SEQRES 2 C 168 ASP ALA ILE PRO ALA VAL GLU VAL PHE GLU GLY GLU PRO SEQRES 3 C 168 GLY ASN LYS VAL ASN LEU ALA GLU LEU PHE LYS GLY LYS SEQRES 4 C 168 LYS GLY VAL LEU PHE GLY VAL PRO GLY ALA PHE THR PRO SEQRES 5 C 168 GLY CYS SER LYS THR HIS LEU PRO GLY PHE VAL GLU GLN SEQRES 6 C 168 ALA GLU ALA LEU LYS ALA LYS GLY VAL GLN VAL VAL ALA SEQRES 7 C 168 CYS LEU SER VAL ASN ASP ALA PHE VAL THR GLY GLU TRP SEQRES 8 C 168 GLY ARG ALA HIS LYS ALA GLU GLY LYS VAL ARG LEU LEU SEQRES 9 C 168 ALA ASP PRO THR GLY ALA PHE GLY LYS GLU THR ASP LEU SEQRES 10 C 168 LEU LEU ASP ASP SER LEU VAL SER ILE PHE GLY ASN ARG SEQRES 11 C 168 ARG LEU LYS ARG PHE SER MET VAL VAL GLN ASP GLY ILE SEQRES 12 C 168 VAL LYS ALA LEU ASN VAL GLU PRO ASP GLY THR GLY LEU SEQRES 13 C 168 THR CYS SER LEU ALA PRO ASN ILE ILE SER GLN LEU HET EKZ A 201 12 HET DMS A 202 4 HET EKZ B 201 12 HET DMS B 202 4 HET DMS B 203 4 HET DMS C 201 4 HET EKZ C 202 12 HETNAM EKZ 4-TERT-BUTYLBENZENE-1,2-DIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN EKZ 4-TERT-BUTYLCATECHOL (CAS 98-29-3) FORMUL 4 EKZ 3(C10 H14 O2) FORMUL 5 DMS 4(C2 H6 O S) FORMUL 11 HOH *440(H2 O) HELIX 1 1 LEU A 25 LYS A 30 1 6 HELIX 2 2 THR A 44 THR A 50 1 7 HELIX 3 3 THR A 50 GLN A 58 1 9 HELIX 4 4 GLN A 58 ALA A 64 1 7 HELIX 5 5 ASP A 77 HIS A 88 1 12 HELIX 6 6 GLY A 102 ASP A 109 1 8 HELIX 7 7 LEU A 116 GLY A 121 1 6 HELIX 8 8 LEU A 153 GLN A 160 1 8 HELIX 9 9 LEU B 25 LYS B 30 1 6 HELIX 10 10 THR B 44 THR B 50 1 7 HELIX 11 11 THR B 50 GLN B 58 1 9 HELIX 12 12 GLN B 58 ALA B 64 1 7 HELIX 13 13 ASP B 77 HIS B 88 1 12 HELIX 14 14 GLY B 102 ASP B 109 1 8 HELIX 15 15 LEU B 116 GLY B 121 1 6 HELIX 16 16 LEU B 153 LEU B 161 1 9 HELIX 17 17 LEU C 25 LYS C 30 1 6 HELIX 18 18 THR C 44 THR C 50 1 7 HELIX 19 19 THR C 50 GLN C 58 1 9 HELIX 20 20 GLN C 58 LYS C 65 1 8 HELIX 21 21 ASP C 77 HIS C 88 1 12 HELIX 22 22 GLY C 102 ASP C 109 1 8 HELIX 23 23 ASP C 113 SER C 115 5 3 HELIX 24 24 LEU C 116 GLY C 121 1 6 HELIX 25 25 LEU C 153 LEU C 161 5 9 SHEET 1 A 2 GLU A 13 PHE A 15 0 SHEET 2 A 2 LYS A 22 ASN A 24 -1 O VAL A 23 N VAL A 14 SHEET 1 B 5 ARG A 95 ALA A 98 0 SHEET 2 B 5 VAL A 69 SER A 74 1 N VAL A 70 O ARG A 95 SHEET 3 B 5 LYS A 33 GLY A 38 1 N PHE A 37 O ALA A 71 SHEET 4 B 5 PHE A 128 GLN A 133 -1 O VAL A 132 N GLY A 34 SHEET 5 B 5 ILE A 136 VAL A 142 -1 O ASN A 141 N SER A 129 SHEET 1 C 7 LYS B 22 ASN B 24 0 SHEET 2 C 7 GLU B 13 GLU B 16 -1 N VAL B 14 O VAL B 23 SHEET 3 C 7 ARG B 95 ALA B 98 -1 O ALA B 98 N PHE B 15 SHEET 4 C 7 VAL B 69 SER B 74 1 N CYS B 72 O LEU B 97 SHEET 5 C 7 LYS B 33 GLY B 38 1 N PHE B 37 O LEU B 73 SHEET 6 C 7 PHE B 128 GLN B 133 -1 O VAL B 132 N GLY B 34 SHEET 7 C 7 ILE B 136 VAL B 142 -1 O ASN B 141 N SER B 129 SHEET 1 D 2 GLU C 13 PHE C 15 0 SHEET 2 D 2 LYS C 22 ASN C 24 -1 O VAL C 23 N VAL C 14 SHEET 1 E 5 ARG C 95 ALA C 98 0 SHEET 2 E 5 VAL C 69 SER C 74 1 N CYS C 72 O LEU C 97 SHEET 3 E 5 LYS C 33 GLY C 38 1 N PHE C 37 O LEU C 73 SHEET 4 E 5 PHE C 128 GLN C 133 -1 O VAL C 132 N GLY C 34 SHEET 5 E 5 ILE C 136 VAL C 142 -1 O ASN C 141 N SER C 129 SITE 1 AC1 13 PRO A 40 THR A 44 PRO A 45 GLY A 46 SITE 2 AC1 13 CYS A 47 LEU A 116 PHE A 120 ARG A 127 SITE 3 AC1 13 THR A 147 LYS C 63 ALA C 64 LYS C 65 SITE 4 AC1 13 GLY C 66 SITE 1 AC2 7 LYS A 63 VAL A 69 VAL A 70 GLY A 92 SITE 2 AC2 7 LYS A 93 ARG A 95 HOH A2124 SITE 1 AC3 12 ALA A 64 GLY A 66 PRO B 40 THR B 44 SITE 2 AC3 12 PRO B 45 GLY B 46 CYS B 47 LEU B 116 SITE 3 AC3 12 PHE B 120 ARG B 127 THR B 147 HOH B 364 SITE 1 AC4 7 VAL B 69 VAL B 70 GLY B 92 LYS B 93 SITE 2 AC4 7 VAL B 94 ARG B 95 HOH B 392 SITE 1 AC5 5 LYS A 32 GLN A 68 HOH A2044 LEU B 112 SITE 2 AC5 5 ASP B 113 SITE 1 AC6 7 LYS C 63 VAL C 69 VAL C 70 GLY C 92 SITE 2 AC6 7 LYS C 93 ARG C 95 HOH C 354 SITE 1 AC7 7 THR C 44 PRO C 45 GLY C 46 CYS C 47 SITE 2 AC7 7 LEU C 116 ARG C 127 ASP C 145 CRYST1 84.960 101.550 148.700 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006725 0.00000