HEADER HORMONE 13-DEC-12 4IDW TITLE POLYCRYSTALLINE T6 BOVINE INSULIN: ANISOTROPIC LATTICE EVOLUTION AND TITLE 2 NOVEL STRUCTURE REFINEMENT STRATEGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN A CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: INSULIN B CHAIN; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 7 ORGANISM_COMMON: BOVINE; SOURCE 8 ORGANISM_TAXID: 9913 KEYWDS HORMONE, INSULIN FAMILY, CARBOHYDRATE METABOLISM, HORMONE-GROWTH, T6 KEYWDS 2 BOVINE INSULIN EXPDTA POWDER DIFFRACTION AUTHOR I.MARGIOLAKI,A.E.GIANNOPOULOU,J.P.WRIGHT,L.KNIGHT,M.NORRMAN, AUTHOR 2 G.SCHLUCKEBIER,A.FITCH,R.B.VON DREELE REVDAT 1 05-JUN-13 4IDW 0 JRNL AUTH I.MARGIOLAKI,A.E.GIANNOPOULOU,J.P.WRIGHT,L.KNIGHT,M.NORRMAN, JRNL AUTH 2 G.SCHLUCKEBIER,A.N.FITCH,R.B.VON DREELE JRNL TITL HIGH-RESOLUTION POWDER X-RAY DATA REVEAL THE T6 HEXAMERIC JRNL TITL 2 FORM OF BOVINE INSULIN JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 978 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23695242 JRNL DOI 10.1107/S0907444913003867 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 4 REMARK 4 4IDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-12. REMARK 100 THE RCSB ID CODE IS RCSB076629. REMARK 250 REMARK 250 REFINEMENT. REMARK 250 PROGRAM : GSAS REMARK 250 AUTHORS : LARSON & VON DREELE REMARK 250 REMARK 250 DATA USED IN REFINEMENT REMARK 250 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 250 RESOLUTION RANGE LOW (ANGSTROMS) : 18.18 REMARK 250 POWDER DIFFRACTION DATA. REMARK 250 REMARK 250 FIT TO DATA USED IN REFINEMENT REMARK 250 NUMBER OF POWDER PATTERNS : 14 REMARK 250 PROFILE R VALUES (%) : 7.06 7.85 8.54 7.50 9.13 REMARK 250 WEIGHTED PROFILE R VALUES (%) : 9.37 10.00 11.16 9.44 11.37 REMARK 250 F**2 R VALUES (%) : 25.05 31.98 18.03 35.26 33.68 REMARK 250 NUMBERS OF POWDER PATTERN POINTS : 8999 8999 8999 6750 6750 REMARK 250 NUMBERS OF REFLECTIONS : 2138 2118 2138 2138 2118 REMARK 250 TOTAL NUMBER OF POWDER POINTS :120575 REMARK 250 REMARK 250 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 250 PROTEIN ATOMS : 800 REMARK 250 NUCLEIC ACID ATOMS : NULL REMARK 250 HETEROGEN ATOMS : 2 REMARK 250 SOLVENT ATOMS : 44 REMARK 250 REMARK 250 MODEL REFINEMENT. REMARK 250 NUMBER OF LEAST-SQUARES PARAMETERS : 1102 REMARK 250 NUMBER OF RESTRAINTS : 1542 REMARK 250 LEAST-SQUARES MATRIX BAND WIDTH : 50 REMARK 250 REMARK 250 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. NUMBER. REMARK 250 BOND ANGLES (DEG) : 1.75 306 REMARK 250 INTERATOMIC DISTANCES (A) :0.029 220 REMARK 250 CHIRAL VOLUMES (A**3) :0.089 98 REMARK 250 DISTANCES FROM RESTRAINT PLANES (A) :0.026 102 REMARK 250 TORSION PSEUDOPOTENTIAL RESTRAINTS (E) : 3.49 135 REMARK 250 TORSION ANGLE RESTRAINTS (E) : 0.84 290 REMARK 250 ANTI-BUMPING DISTANCE RESTRAINTS (A) :0.505 286 REMARK 250 HYDROGEN BOND DISTANCE RESTRAINTS (A) :0.119 80 REMARK 250 REMARK 250 EXPERIMENTAL DETAILS REMARK 250 EXPERIMENT TYPE : X-RAY POWDER DIFFRACTION REMARK 250 DATE OF DATA COLLECTION : 07-NOV-2006 REMARK 250 TEMPERATURE (KELVIN) : 295 REMARK 250 PH : NULL REMARK 250 SAMPLE HOLDER : 1.0MM GLASS CAPILLARY REMARK 250 NUMBER OF CRYSTALS USED : POLYCRYSTAL SLURRY REMARK 250 REMARK 250 SYNCHROTRON (Y/N) : Y REMARK 250 RADIATION SOURCE : ESRF REMARK 250 BEAMLINE : ID31, ID11 REMARK 250 X-RAY GENERATOR MODEL : NULL REMARK 250 MONOCHROMATIC OR LAUE (M/L) : M REMARK 250 WAVELENGTH OR RANGE (A) : 1.29967(9), 0.53395(20) REMARK 250 MONOCHROMATOR : DOUBLE SI(111) REMARK 250 ANALYZER : SI(111) REMARK 250 REMARK 250 DETECTOR TYPE : NINE AVALANCHE PHOTODIODE (APD) DE REMARK 250 DETECTOR MANUFACTURER : NULL REMARK 250 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 250 DATA SCALING/ INTEGRATION SOFTWARE : ID31SUM, FIT2D REMARK 250 REMARK 250 SOFTWARE USED: GSAS REMARK 250 STARTING MODEL: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE1 HIS B 10 CE1 HIS B 10 2555 1.57 REMARK 500 CE1 HIS D 10 CE1 HIS D 10 2555 2.03 REMARK 500 CE1 HIS B 10 NE2 HIS B 10 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -157.84 -124.80 REMARK 500 CYS B 19 -84.90 -66.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA D 14 -11.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 10 NE2 REMARK 620 2 HOH D 202 O 120.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 10 NE2 REMARK 620 2 HOH B 603 O 114.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 101 DBREF 4IDW A 1 21 UNP P01317 INS_BOVIN 85 105 DBREF 4IDW B 1 30 UNP P01317 INS_BOVIN 25 54 DBREF 4IDW C 1 21 UNP P01317 INS_BOVIN 85 105 DBREF 4IDW D 1 30 UNP P01317 INS_BOVIN 25 54 SEQRES 1 A 21 GLY ILE VAL GLU GLN CYS CYS ALA SER VAL CYS SER LEU SEQRES 2 A 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 B 30 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 B 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 B 30 THR PRO LYS ALA SEQRES 1 C 21 GLY ILE VAL GLU GLN CYS CYS ALA SER VAL CYS SER LEU SEQRES 2 C 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 D 30 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 D 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 D 30 THR PRO LYS ALA HET ZN B 501 1 HET ZN D 101 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *44(H2 O) HELIX 1 1 GLY A 1 SER A 9 1 9 HELIX 2 2 SER A 12 ASN A 18 1 7 HELIX 3 3 GLY B 8 CYS B 19 1 12 HELIX 4 4 ILE C 2 CYS C 7 1 6 HELIX 5 5 SER C 12 ASN C 18 1 7 HELIX 6 6 GLY D 8 GLY D 20 1 13 HELIX 7 7 GLU D 21 GLY D 23 5 3 SHEET 1 A 2 PHE B 24 TYR B 26 0 SHEET 2 A 2 PHE D 24 TYR D 26 -1 O PHE D 24 N TYR B 26 SSBOND 1 CYS A 6 CYS A 11 1555 1555 2.04 SSBOND 2 CYS A 7 CYS B 7 1555 1555 2.04 SSBOND 3 CYS A 20 CYS B 19 1555 1555 2.04 SSBOND 4 CYS C 6 CYS C 11 1555 1555 2.04 SSBOND 5 CYS C 7 CYS D 7 1555 1555 2.04 SSBOND 6 CYS C 20 CYS D 19 1555 1555 2.04 LINK NE2 HIS D 10 ZN ZN D 101 1555 1555 2.08 LINK NE2 HIS B 10 ZN ZN B 501 1555 1555 2.20 LINK ZN ZN D 101 O HOH D 202 1555 1555 2.40 LINK ZN ZN B 501 O HOH B 603 1555 1555 2.41 SITE 1 AC1 2 HIS B 10 HOH B 603 SITE 1 AC2 2 HIS D 10 HOH D 202 CRYST1 82.607 82.607 33.632 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012106 0.006989 0.000000 0.00000 SCALE2 0.000000 0.013978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029733 0.00000