HEADER HYDROLASE/DNA 05-SEP-12 4GZ1 TITLE MUS MUSCULUS TDP2 REACTION PRODUCT (5'-PHOSPHORYLATED DNA)-MG2+ TITLE 2 COMPLEX AT 1.5 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-DNA PHOSPHODIESTERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 118-370; COMPND 5 SYNONYM: TYR-DNA PHOSPHODIESTERASE 2, 5'-TYROSYL-DNA COMPND 6 PHOSPHODIESTERASE, 5'-TYR-DNA PHOSPHODIESTERASE, TRAF AND TNF COMPND 7 RECEPTOR-ASSOCIATED PROTEIN; COMPND 8 EC: 3.1.4.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'); COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TDP2, TTRAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG9; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED DNA KEYWDS PROTEIN-DNA COMPLEX, DNA REPAIR, 5'-DNA END PROCESSING, KEYWDS 2 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE DOMAIN, EEP DOMAIN, 5'-DNA END KEYWDS 3 RECOGNITION, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.SCHELLENBERG,R.S.WILLIAMS REVDAT 6 28-FEB-24 4GZ1 1 REMARK SEQADV LINK REVDAT 5 17-JUL-19 4GZ1 1 REMARK REVDAT 4 02-JAN-13 4GZ1 1 JRNL REVDAT 3 28-NOV-12 4GZ1 1 JRNL REVDAT 2 21-NOV-12 4GZ1 1 JRNL REVDAT 1 31-OCT-12 4GZ1 0 JRNL AUTH M.J.SCHELLENBERG,C.D.APPEL,S.ADHIKARI,P.D.ROBERTSON, JRNL AUTH 2 D.A.RAMSDEN,R.S.WILLIAMS JRNL TITL MECHANISM OF REPAIR OF 5'-TOPOISOMERASE II-DNA ADDUCTS BY JRNL TITL 2 MAMMALIAN TYROSYL-DNA PHOSPHODIESTERASE 2. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1363 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23104055 JRNL DOI 10.1038/NSMB.2418 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 104060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.71490 REMARK 3 B22 (A**2) : 3.23340 REMARK 3 B33 (A**2) : 0.48150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 100MM HEPES, 50MM REMARK 280 MG(CO2)2, PH 7, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.89450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.56950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.89450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.56950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 GLU A 333 REMARK 465 SER B 115 REMARK 465 ASN B 116 REMARK 465 GLY B 117 REMARK 465 LEU B 118 REMARK 465 GLU B 119 REMARK 465 ASP B 120 REMARK 465 SER B 121 REMARK 465 SER B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 204 O HOH B 618 1565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 3 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 240 154.00 84.89 REMARK 500 ASN A 274 18.77 57.44 REMARK 500 GLU B 238 129.21 -38.34 REMARK 500 THR B 240 155.14 85.47 REMARK 500 PRO B 318 55.32 -91.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 162 OE2 REMARK 620 2 HOH A 616 O 170.3 REMARK 620 3 HOH A 735 O 85.1 86.2 REMARK 620 4 HOH A 739 O 88.3 87.9 93.8 REMARK 620 5 DC D 1 OP2 94.4 90.2 91.5 174.3 REMARK 620 6 HOH D 104 O 89.5 99.3 174.2 88.3 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 162 OE2 REMARK 620 2 HOH B 596 O 85.3 REMARK 620 3 HOH B 597 O 89.9 92.2 REMARK 620 4 HOH B 598 O 169.6 86.1 84.6 REMARK 620 5 DC C 1 OP2 94.7 92.4 173.8 91.5 REMARK 620 6 HOH C 118 O 89.5 174.3 90.0 99.3 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GYZ RELATED DB: PDB REMARK 900 RELATED ID: 4GZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4GZ2 RELATED DB: PDB DBREF 4GZ1 A 118 370 UNP Q9JJX7 TYDP2_MOUSE 118 370 DBREF 4GZ1 B 118 370 UNP Q9JJX7 TYDP2_MOUSE 118 370 DBREF 4GZ1 C 1 9 PDB 4GZ1 4GZ1 1 9 DBREF 4GZ1 D 1 9 PDB 4GZ1 4GZ1 1 9 SEQADV 4GZ1 SER A 115 UNP Q9JJX7 EXPRESSION TAG SEQADV 4GZ1 ASN A 116 UNP Q9JJX7 EXPRESSION TAG SEQADV 4GZ1 GLY A 117 UNP Q9JJX7 EXPRESSION TAG SEQADV 4GZ1 SER B 115 UNP Q9JJX7 EXPRESSION TAG SEQADV 4GZ1 ASN B 116 UNP Q9JJX7 EXPRESSION TAG SEQADV 4GZ1 GLY B 117 UNP Q9JJX7 EXPRESSION TAG SEQRES 1 A 256 SER ASN GLY LEU GLU ASP SER SER THR ILE SER PHE ILE SEQRES 2 A 256 THR TRP ASN ILE ASP GLY LEU ASP GLY CYS ASN LEU PRO SEQRES 3 A 256 GLU ARG ALA ARG GLY VAL CYS SER CYS LEU ALA LEU TYR SEQRES 4 A 256 SER PRO ASP VAL VAL PHE LEU GLN GLU VAL ILE PRO PRO SEQRES 5 A 256 TYR CYS ALA TYR LEU LYS LYS ARG ALA ALA SER TYR THR SEQRES 6 A 256 ILE ILE THR GLY ASN GLU GLU GLY TYR PHE THR ALA ILE SEQRES 7 A 256 LEU LEU LYS LYS GLY ARG VAL LYS PHE LYS SER GLN GLU SEQRES 8 A 256 ILE ILE PRO PHE PRO ASN THR LYS MET MET ARG ASN LEU SEQRES 9 A 256 LEU CYS VAL ASN VAL SER LEU GLY GLY ASN GLU PHE CYS SEQRES 10 A 256 LEU MET THR SER HIS LEU GLU SER THR ARG GLU HIS SER SEQRES 11 A 256 ALA GLU ARG ILE ARG GLN LEU LYS THR VAL LEU GLY LYS SEQRES 12 A 256 MET GLN GLU ALA PRO ASP SER THR THR VAL ILE PHE ALA SEQRES 13 A 256 GLY ASP THR ASN LEU ARG ASP GLN GLU VAL ILE LYS CYS SEQRES 14 A 256 GLY GLY LEU PRO ASP ASN VAL PHE ASP ALA TRP GLU PHE SEQRES 15 A 256 LEU GLY LYS PRO LYS HIS CYS GLN TYR THR TRP ASP THR SEQRES 16 A 256 LYS ALA ASN ASN ASN LEU ARG ILE PRO ALA ALA TYR LYS SEQRES 17 A 256 HIS ARG PHE ASP ARG ILE PHE PHE ARG ALA GLU GLU GLY SEQRES 18 A 256 HIS LEU ILE PRO GLN SER LEU ASP LEU VAL GLY LEU GLU SEQRES 19 A 256 LYS LEU ASP CYS GLY ARG PHE PRO SER ASP HIS TRP GLY SEQRES 20 A 256 LEU LEU CYS THR LEU ASN VAL VAL LEU SEQRES 1 B 256 SER ASN GLY LEU GLU ASP SER SER THR ILE SER PHE ILE SEQRES 2 B 256 THR TRP ASN ILE ASP GLY LEU ASP GLY CYS ASN LEU PRO SEQRES 3 B 256 GLU ARG ALA ARG GLY VAL CYS SER CYS LEU ALA LEU TYR SEQRES 4 B 256 SER PRO ASP VAL VAL PHE LEU GLN GLU VAL ILE PRO PRO SEQRES 5 B 256 TYR CYS ALA TYR LEU LYS LYS ARG ALA ALA SER TYR THR SEQRES 6 B 256 ILE ILE THR GLY ASN GLU GLU GLY TYR PHE THR ALA ILE SEQRES 7 B 256 LEU LEU LYS LYS GLY ARG VAL LYS PHE LYS SER GLN GLU SEQRES 8 B 256 ILE ILE PRO PHE PRO ASN THR LYS MET MET ARG ASN LEU SEQRES 9 B 256 LEU CYS VAL ASN VAL SER LEU GLY GLY ASN GLU PHE CYS SEQRES 10 B 256 LEU MET THR SER HIS LEU GLU SER THR ARG GLU HIS SER SEQRES 11 B 256 ALA GLU ARG ILE ARG GLN LEU LYS THR VAL LEU GLY LYS SEQRES 12 B 256 MET GLN GLU ALA PRO ASP SER THR THR VAL ILE PHE ALA SEQRES 13 B 256 GLY ASP THR ASN LEU ARG ASP GLN GLU VAL ILE LYS CYS SEQRES 14 B 256 GLY GLY LEU PRO ASP ASN VAL PHE ASP ALA TRP GLU PHE SEQRES 15 B 256 LEU GLY LYS PRO LYS HIS CYS GLN TYR THR TRP ASP THR SEQRES 16 B 256 LYS ALA ASN ASN ASN LEU ARG ILE PRO ALA ALA TYR LYS SEQRES 17 B 256 HIS ARG PHE ASP ARG ILE PHE PHE ARG ALA GLU GLU GLY SEQRES 18 B 256 HIS LEU ILE PRO GLN SER LEU ASP LEU VAL GLY LEU GLU SEQRES 19 B 256 LYS LEU ASP CYS GLY ARG PHE PRO SER ASP HIS TRP GLY SEQRES 20 B 256 LEU LEU CYS THR LEU ASN VAL VAL LEU SEQRES 1 C 9 DC DC DG DA DA DT DT DC DG SEQRES 1 D 9 DC DC DG DA DA DT DT DC DG HET EPE A 401 15 HET MG A 402 1 HET FMT B 401 3 HET MG B 402 1 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETSYN EPE HEPES FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 MG 2(MG 2+) FORMUL 7 FMT C H2 O2 FORMUL 9 HOH *469(H2 O) HELIX 1 1 LEU A 118 SER A 121 5 4 HELIX 2 2 ASN A 138 SER A 154 1 17 HELIX 3 3 ILE A 164 ALA A 175 1 12 HELIX 4 4 THR A 240 GLU A 242 5 3 HELIX 5 5 HIS A 243 ALA A 261 1 19 HELIX 6 6 ARG A 276 GLY A 284 1 9 HELIX 7 7 ALA A 293 LEU A 297 1 5 HELIX 8 8 PRO A 300 GLN A 304 5 5 HELIX 9 9 ASN B 138 SER B 154 1 17 HELIX 10 10 ILE B 164 ALA B 175 1 12 HELIX 11 11 THR B 240 GLU B 242 5 3 HELIX 12 12 HIS B 243 ALA B 261 1 19 HELIX 13 13 ARG B 276 GLY B 284 1 9 HELIX 14 14 ALA B 293 LEU B 297 1 5 HELIX 15 15 PRO B 300 GLN B 304 5 5 SHEET 1 A 6 TYR A 178 THR A 182 0 SHEET 2 A 6 PHE A 189 LYS A 195 -1 O LEU A 194 N THR A 179 SHEET 3 A 6 VAL A 157 VAL A 163 -1 N VAL A 158 O LEU A 193 SHEET 4 A 6 THR A 123 ASN A 130 1 N ILE A 127 O PHE A 159 SHEET 5 A 6 GLY A 361 VAL A 368 -1 O CYS A 364 N PHE A 126 SHEET 6 A 6 LEU A 337 VAL A 345 -1 N GLN A 340 O THR A 365 SHEET 1 B 6 VAL A 199 PRO A 208 0 SHEET 2 B 6 ASN A 217 LEU A 225 -1 O CYS A 220 N GLU A 205 SHEET 3 B 6 ASN A 228 THR A 234 -1 O LEU A 232 N VAL A 221 SHEET 4 B 6 THR A 266 ASP A 272 1 O ILE A 268 N MET A 233 SHEET 5 B 6 ASP A 326 ARG A 331 -1 O PHE A 329 N PHE A 269 SHEET 6 B 6 VAL A 290 ASP A 292 -1 N PHE A 291 O PHE A 330 SHEET 1 C 2 TRP A 307 ASP A 308 0 SHEET 2 C 2 LYS A 322 HIS A 323 -1 O HIS A 323 N TRP A 307 SHEET 1 D 6 TYR B 178 THR B 182 0 SHEET 2 D 6 PHE B 189 LYS B 195 -1 O LEU B 194 N THR B 179 SHEET 3 D 6 VAL B 157 VAL B 163 -1 N VAL B 158 O LEU B 193 SHEET 4 D 6 ILE B 124 ASN B 130 1 N ILE B 127 O PHE B 159 SHEET 5 D 6 GLY B 361 ASN B 367 -1 O CYS B 364 N PHE B 126 SHEET 6 D 6 ILE B 338 VAL B 345 -1 N GLN B 340 O THR B 365 SHEET 1 E 6 LYS B 200 PRO B 208 0 SHEET 2 E 6 ASN B 217 LEU B 225 -1 O CYS B 220 N GLU B 205 SHEET 3 E 6 ASN B 228 THR B 234 -1 O LEU B 232 N VAL B 221 SHEET 4 E 6 THR B 266 ASP B 272 1 O ILE B 268 N MET B 233 SHEET 5 E 6 ASP B 326 ARG B 331 -1 O PHE B 329 N PHE B 269 SHEET 6 E 6 PHE B 291 ASP B 292 -1 N PHE B 291 O PHE B 330 SHEET 1 F 2 TRP B 307 ASP B 308 0 SHEET 2 F 2 LYS B 322 HIS B 323 -1 O HIS B 323 N TRP B 307 LINK OE2 GLU A 162 MG MG A 402 1555 1555 2.10 LINK MG MG A 402 O HOH A 616 1555 1555 2.03 LINK MG MG A 402 O HOH A 735 1555 1555 2.12 LINK MG MG A 402 O HOH A 739 1555 1555 2.07 LINK MG MG A 402 OP2 DC D 1 1555 1555 2.11 LINK MG MG A 402 O HOH D 104 1555 1555 2.13 LINK OE2 GLU B 162 MG MG B 402 1555 1555 2.10 LINK MG MG B 402 O HOH B 596 1555 1555 2.10 LINK MG MG B 402 O HOH B 597 1555 1555 2.09 LINK MG MG B 402 O HOH B 598 1555 1555 2.08 LINK MG MG B 402 OP2 DC C 1 1555 1555 2.11 LINK MG MG B 402 O HOH C 118 1555 1555 2.14 SITE 1 AC1 7 PRO A 210 HOH A 567 HOH A 633 ILE B 180 SITE 2 AC1 7 ILE B 181 PHE B 201 HOH B 507 SITE 1 AC2 6 GLU A 162 HOH A 616 HOH A 735 HOH A 739 SITE 2 AC2 6 DC D 1 HOH D 104 SITE 1 AC3 5 CYS B 149 TYR B 153 VAL B 345 GLY B 346 SITE 2 AC3 5 LEU B 347 SITE 1 AC4 6 GLU B 162 HOH B 596 HOH B 597 HOH B 598 SITE 2 AC4 6 DC C 1 HOH C 118 CRYST1 55.200 69.139 167.789 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005960 0.00000