HEADER CHAPERONE/PEPTIDE BINDING PROTEIN 03-MAY-12 4EZO TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF E.COLI DNAK IN TITLE 2 COMPLEX WITH PR-39 (RESIDUES 1 TO 15) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 389-607; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTIBACTERIAL PROTEIN PR-39; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 131-145; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0014, DNAK, GROP, GRPF, JW0013, SEG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 11 ORGANISM_COMMON: PIGS,SWINE,WILD BOAR; SOURCE 12 ORGANISM_TAXID: 9823; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN PIGS. KEYWDS CHAPERONE, PEPTIDE BINDING, CHAPERONE-PEPTIDE BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,N.STRAETER REVDAT 3 28-FEB-24 4EZO 1 REMARK REVDAT 2 17-JUL-13 4EZO 1 JRNL REVDAT 1 17-APR-13 4EZO 0 JRNL AUTH M.ZAHN,N.BERTHOLD,B.KIESLICH,D.KNAPPE,R.HOFFMANN,N.STRATER JRNL TITL STRUCTURAL STUDIES ON THE FORWARD AND REVERSE BINDING MODES JRNL TITL 2 OF PEPTIDES TO THE CHAPERONE DNAK. JRNL REF J.MOL.BIOL. V. 425 2463 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23562829 JRNL DOI 10.1016/J.JMB.2013.03.041 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC WITH PDBID 3DPO REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2915 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3373 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.85000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 3.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.407 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3463 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4682 ; 2.024 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 5.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;39.764 ;26.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 655 ;15.717 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2538 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -33.4561 37.1935 -21.4741 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0788 REMARK 3 T33: 0.0539 T12: -0.0102 REMARK 3 T13: -0.0056 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6336 L22: 0.2183 REMARK 3 L33: 0.1882 L12: -0.3404 REMARK 3 L13: -0.4584 L23: 0.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: 0.0157 S13: 0.1296 REMARK 3 S21: -0.0298 S22: 0.0612 S23: 0.0154 REMARK 3 S31: 0.0178 S32: -0.0590 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 502 A 554 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5529 23.5159 -15.8468 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0262 REMARK 3 T33: 0.1144 T12: -0.0150 REMARK 3 T13: -0.0053 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.0539 L22: 1.1760 REMARK 3 L33: 1.2093 L12: 1.3531 REMARK 3 L13: -0.7543 L23: -0.7850 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0235 S13: 0.0666 REMARK 3 S21: -0.0335 S22: 0.0704 S23: 0.1103 REMARK 3 S31: 0.0522 S32: -0.0955 S33: -0.0685 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 555 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): -53.6795 16.6254 -2.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.2898 REMARK 3 T33: 0.2026 T12: -0.0282 REMARK 3 T13: 0.0490 T23: 0.0922 REMARK 3 L TENSOR REMARK 3 L11: 5.3878 L22: 0.6027 REMARK 3 L33: 1.9455 L12: -0.2730 REMARK 3 L13: -0.0742 L23: -0.9598 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.7731 S13: -0.1352 REMARK 3 S21: 0.0594 S22: 0.2910 S23: 0.2461 REMARK 3 S31: -0.1173 S32: -0.3702 S33: -0.2348 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 389 B 497 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1918 18.0744 -5.5603 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0630 REMARK 3 T33: 0.0503 T12: -0.0140 REMARK 3 T13: -0.0145 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.6291 L22: 1.5358 REMARK 3 L33: 0.3359 L12: -0.4861 REMARK 3 L13: -0.3742 L23: 0.5904 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.1101 S13: -0.0596 REMARK 3 S21: -0.0540 S22: 0.0241 S23: -0.0999 REMARK 3 S31: -0.0022 S32: 0.0557 S33: -0.0322 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 498 B 534 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2882 20.4502 -2.7790 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.0479 REMARK 3 T33: 0.0805 T12: 0.0033 REMARK 3 T13: -0.0062 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 3.5080 L22: 2.0888 REMARK 3 L33: 0.6647 L12: -0.1513 REMARK 3 L13: 0.3030 L23: 0.5358 REMARK 3 S TENSOR REMARK 3 S11: -0.0995 S12: -0.1319 S13: -0.0341 REMARK 3 S21: -0.0375 S22: 0.0834 S23: 0.3729 REMARK 3 S31: -0.0593 S32: -0.1156 S33: 0.0161 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 535 B 603 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0050 -8.5351 -19.6525 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.3432 REMARK 3 T33: 0.1842 T12: -0.1532 REMARK 3 T13: -0.0002 T23: -0.1312 REMARK 3 L TENSOR REMARK 3 L11: 5.0093 L22: 3.7572 REMARK 3 L33: 2.1822 L12: -0.0855 REMARK 3 L13: -0.3882 L23: 1.2804 REMARK 3 S TENSOR REMARK 3 S11: -0.2435 S12: 1.1282 S13: -0.3825 REMARK 3 S21: -0.3417 S22: 0.2377 S23: 0.1328 REMARK 3 S31: 0.0063 S32: -0.1044 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): -42.8554 31.9760 -14.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.0563 T22: 0.1845 REMARK 3 T33: 0.4156 T12: 0.0366 REMARK 3 T13: 0.1151 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 9.4035 L22: 14.5101 REMARK 3 L33: 57.0072 L12: -2.5002 REMARK 3 L13: 23.0879 L23: -4.2656 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: -0.5387 S13: -0.4804 REMARK 3 S21: 0.7657 S22: 0.8065 S23: 1.4441 REMARK 3 S31: 0.1636 S32: -1.3104 S33: -0.8476 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 13 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6424 9.5735 -13.2536 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: 0.0523 REMARK 3 T33: 0.1015 T12: -0.0086 REMARK 3 T13: 0.0035 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 4.1573 L22: 5.3740 REMARK 3 L33: 33.2227 L12: -0.2305 REMARK 3 L13: 0.7113 L23: -9.8882 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: 0.3888 S13: -0.2114 REMARK 3 S21: -0.1538 S22: 0.1825 S23: -0.0182 REMARK 3 S31: 0.3527 S32: -0.2831 S33: -0.0077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4EZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI - 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45171 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PDB ENTRY 3DPO REMARK 200 SOFTWARE USED: REFMAC WITH PDBID 3DPO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M CITRIC REMARK 280 ACID PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.81600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.63400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.81600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.63400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -44.69300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 600 REMARK 465 ILE A 601 REMARK 465 ALA A 602 REMARK 465 GLN A 603 REMARK 465 GLN A 604 REMARK 465 GLN A 605 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 GLN B 604 REMARK 465 GLN B 605 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 ARG C 1 REMARK 465 ARG C 2 REMARK 465 ARG C 3 REMARK 465 PRO C 4 REMARK 465 ARG C 13 REMARK 465 PRO C 14 REMARK 465 PRO C 15 REMARK 465 ARG D 1 REMARK 465 ARG D 2 REMARK 465 ARG D 3 REMARK 465 PRO D 4 REMARK 465 ARG D 5 REMARK 465 PRO D 14 REMARK 465 PRO D 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 422 CG HIS A 422 CD2 0.069 REMARK 500 HIS A 439 CG HIS A 439 CD2 0.058 REMARK 500 HIS A 485 CG HIS A 485 CD2 0.055 REMARK 500 HIS A 541 CG HIS A 541 CD2 0.059 REMARK 500 HIS B 541 CG HIS B 541 CD2 0.054 REMARK 500 HIS B 544 CG HIS B 544 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 596 -74.97 -21.23 REMARK 500 LEU A 598 48.17 -101.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKX RELATED DB: PDB REMARK 900 RELATED ID: 1DKY RELATED DB: PDB REMARK 900 RELATED ID: 1DKZ RELATED DB: PDB REMARK 900 RELATED ID: 3DPO RELATED DB: PDB REMARK 900 RELATED ID: 3DPP RELATED DB: PDB REMARK 900 RELATED ID: 3DPQ RELATED DB: PDB REMARK 900 RELATED ID: 3QNJ RELATED DB: PDB REMARK 900 RELATED ID: 4E81 RELATED DB: PDB REMARK 900 RELATED ID: 4EZN RELATED DB: PDB REMARK 900 RELATED ID: 4EZP RELATED DB: PDB REMARK 900 RELATED ID: 4EZQ RELATED DB: PDB REMARK 900 RELATED ID: 4EZR RELATED DB: PDB REMARK 900 RELATED ID: 4EZS RELATED DB: PDB REMARK 900 RELATED ID: 4EZT RELATED DB: PDB REMARK 900 RELATED ID: 4EZU RELATED DB: PDB REMARK 900 RELATED ID: 4EZV RELATED DB: PDB REMARK 900 RELATED ID: 4EZW RELATED DB: PDB REMARK 900 RELATED ID: 4EZX RELATED DB: PDB REMARK 900 RELATED ID: 4EZY RELATED DB: PDB REMARK 900 RELATED ID: 4EZZ RELATED DB: PDB REMARK 900 RELATED ID: 4F00 RELATED DB: PDB REMARK 900 RELATED ID: 4F01 RELATED DB: PDB DBREF 4EZO A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4EZO B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4EZO C 1 15 UNP P80054 PR39_PIG 131 145 DBREF 4EZO D 1 15 UNP P80054 PR39_PIG 131 145 SEQRES 1 A 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 A 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 A 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 A 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 A 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 A 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 A 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 A 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 A 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 A 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 A 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 A 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 A 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 A 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 A 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 A 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 A 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 B 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 B 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 B 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 B 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 B 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 B 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 B 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 B 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 B 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 B 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 B 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 B 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 B 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 B 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 B 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 B 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 15 ARG ARG ARG PRO ARG PRO PRO TYR LEU PRO ARG PRO ARG SEQRES 2 C 15 PRO PRO SEQRES 1 D 15 ARG ARG ARG PRO ARG PRO PRO TYR LEU PRO ARG PRO ARG SEQRES 2 D 15 PRO PRO HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 B 701 5 HET SO4 B 702 5 HET SO4 B 703 5 HET SO4 B 704 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *250(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLU A 551 1 30 HELIX 4 4 ALA A 553 LEU A 557 5 5 HELIX 5 5 PRO A 558 GLY A 578 1 21 HELIX 6 6 ASP A 580 SER A 595 1 16 HELIX 7 7 ARG B 447 ASN B 451 5 5 HELIX 8 8 ASN B 508 ASN B 522 1 15 HELIX 9 9 ASN B 522 GLY B 554 1 33 HELIX 10 10 ASP B 555 LEU B 557 5 3 HELIX 11 11 PRO B 558 LYS B 577 1 20 HELIX 12 12 ASP B 580 VAL B 594 1 15 HELIX 13 13 SER B 595 GLN B 603 1 9 SHEET 1 A 2 VAL A 394 THR A 395 0 SHEET 2 A 2 THR A 416 THR A 417 -1 O THR A 416 N THR A 395 SHEET 1 B 4 VAL A 407 ILE A 412 0 SHEET 2 B 4 LEU A 399 THR A 403 -1 N LEU A 399 O LEU A 411 SHEET 3 B 4 VAL A 436 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 B 4 LYS A 452 LEU A 459 -1 O LYS A 452 N GLN A 442 SHEET 1 C 4 THR A 420 PHE A 426 0 SHEET 2 C 4 ILE A 472 ILE A 478 -1 O ILE A 478 N THR A 420 SHEET 3 C 4 LEU A 484 ASP A 490 -1 O HIS A 485 N ASP A 477 SHEET 4 C 4 GLU A 496 ILE A 501 -1 O ILE A 501 N LEU A 484 SHEET 1 D 4 VAL B 407 ILE B 412 0 SHEET 2 D 4 LEU B 399 THR B 403 -1 N ILE B 401 O THR B 409 SHEET 3 D 4 ALA B 435 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 D 4 LYS B 452 ASP B 460 -1 O PHE B 457 N ILE B 438 SHEET 1 E 5 GLU B 496 ILE B 501 0 SHEET 2 E 5 LEU B 484 ASP B 490 -1 N LEU B 484 O ILE B 501 SHEET 3 E 5 ILE B 472 ILE B 478 -1 N ASP B 477 O HIS B 485 SHEET 4 E 5 THR B 420 THR B 428 -1 N PHE B 426 O ILE B 472 SHEET 5 E 5 TYR D 8 LEU D 9 1 O LEU D 9 N SER B 427 CISPEP 1 ILE A 418 PRO A 419 0 6.30 CISPEP 2 ILE B 418 PRO B 419 0 4.98 SITE 1 AC1 4 MET A 404 GLY A 405 HOH A 848 ARG C 11 SITE 1 AC2 5 ASP A 481 SER A 545 LYS A 548 HOH A 886 SITE 2 AC2 5 HOH A 919 SITE 1 AC3 4 LYS B 502 SER B 504 HOH B 864 HOH B 896 SITE 1 AC4 7 ASN A 451 LYS A 452 SER A 453 HOH A 875 SITE 2 AC4 7 LYS B 452 HOH B 843 HOH B 875 SITE 1 AC5 4 LYS A 414 LYS B 414 HOH B 828 HOH B 897 SITE 1 AC6 3 ARG B 447 ARG B 536 GLU B 579 CRYST1 77.632 161.268 44.693 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022375 0.00000