HEADER TRANSPORT PROTEIN 22-JAN-12 4DEU TITLE CRYSTAL STRUCTURE OF THE WILD TYPE TTR BINDING NARINGENIN (TTRWT:NAR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-145; COMPND 5 SYNONYM: ATTR, PREALBUMIN, TBPA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PALB, TTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA SANDWICH, AMYLOIDOSIS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.B.B.TRIVELLA,I.POLIKARPOV REVDAT 2 28-FEB-24 4DEU 1 REMARK SEQADV REVDAT 1 21-NOV-12 4DEU 0 JRNL AUTH D.B.TRIVELLA,C.V.DOS REIS,L.M.LIMA,D.FOGUEL,I.POLIKARPOV JRNL TITL FLAVONOID INTERACTIONS WITH HUMAN TRANSTHYRETIN: COMBINED JRNL TITL 2 STRUCTURAL AND THERMODYNAMIC ANALYSIS. JRNL REF J.STRUCT.BIOL. V. 180 143 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22842046 JRNL DOI 10.1016/J.JSB.2012.07.008 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 29385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.2558 - 3.5527 0.85 2435 126 0.1877 0.1806 REMARK 3 2 3.5527 - 2.8217 0.98 2546 148 0.1715 0.1972 REMARK 3 3 2.8217 - 2.4655 1.00 2858 149 0.1770 0.2098 REMARK 3 4 2.4655 - 2.2403 0.79 2224 131 0.2009 0.2156 REMARK 3 5 2.2403 - 2.0799 0.78 2193 125 0.1696 0.1984 REMARK 3 6 2.0799 - 1.9573 1.00 2819 137 0.1607 0.1876 REMARK 3 7 1.9573 - 1.8594 0.65 1836 98 0.2059 0.2554 REMARK 3 8 1.8594 - 1.7784 1.00 2778 160 0.1541 0.1998 REMARK 3 9 1.7784 - 1.7100 1.00 2787 143 0.1450 0.2216 REMARK 3 10 1.7100 - 1.6510 0.99 2758 152 0.1595 0.2192 REMARK 3 11 1.6510 - 1.5990 0.95 2644 138 0.1714 0.2563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 53.52 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.30890 REMARK 3 B22 (A**2) : 0.01310 REMARK 3 B33 (A**2) : 5.29580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.045 2141 REMARK 3 ANGLE : 2.088 2934 REMARK 3 CHIRALITY : 0.170 323 REMARK 3 PLANARITY : 0.013 379 REMARK 3 DIHEDRAL : 15.036 786 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.46 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29385 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1 M HEPES, REMARK 280 PH 7.5, 28% PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.86700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.58650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.86700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.58650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 43.73400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.17300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C3 NAR A 205 LIES ON A SPECIAL POSITION. REMARK 375 C6 NAR A 205 LIES ON A SPECIAL POSITION. REMARK 375 C11 NAR A 205 LIES ON A SPECIAL POSITION. REMARK 375 C11 NAR B 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 399 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 9 REMARK 465 PRO B 125 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 104 NE CZ NH1 NH2 REMARK 480 ARG B 104 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 367 O HOH A 388 1.72 REMARK 500 O HOH A 376 O HOH A 385 1.93 REMARK 500 O ASP A 99 O1 EDO A 202 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 EDO A 201 O1 EDO A 202 4556 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 54 CD GLU A 54 OE1 -0.081 REMARK 500 GLU A 54 CD GLU A 54 OE2 -0.083 REMARK 500 TYR A 114 CE2 TYR A 114 CD2 -0.107 REMARK 500 THR A 119 C THR A 119 O -0.129 REMARK 500 PHE B 44 CG PHE B 44 CD1 -0.102 REMARK 500 PHE B 44 CZ PHE B 44 CE2 -0.189 REMARK 500 PHE B 44 CE2 PHE B 44 CD2 -0.152 REMARK 500 GLY B 47 C GLY B 47 O -0.113 REMARK 500 THR B 49 C THR B 49 O -0.119 REMARK 500 GLU B 51 CB GLU B 51 CG -0.125 REMARK 500 GLU B 51 CB GLU B 51 CG -0.140 REMARK 500 GLU B 54 CD GLU B 54 OE1 -0.070 REMARK 500 GLU B 72 CD GLU B 72 OE2 -0.075 REMARK 500 TYR B 78 CD1 TYR B 78 CE1 -0.104 REMARK 500 GLU B 89 CD GLU B 89 OE1 -0.080 REMARK 500 GLU B 89 CD GLU B 89 OE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 44 -51.37 -124.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAR A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAR B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DER RELATED DB: PDB REMARK 900 RELATED ID: 4DES RELATED DB: PDB REMARK 900 RELATED ID: 4DET RELATED DB: PDB REMARK 900 RELATED ID: 4DEW RELATED DB: PDB DBREF 4DEU A 10 125 UNP P02766 TTHY_HUMAN 30 145 DBREF 4DEU B 10 125 UNP P02766 TTHY_HUMAN 30 145 SEQADV 4DEU ALA A 9 UNP P02766 EXPRESSION TAG SEQADV 4DEU ALA B 9 UNP P02766 EXPRESSION TAG SEQRES 1 A 117 ALA CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG SEQRES 2 A 117 GLY SER PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG SEQRES 3 A 117 LYS ALA ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY SEQRES 4 A 117 LYS THR SER GLU SER GLY GLU LEU HIS GLY LEU THR THR SEQRES 5 A 117 GLU GLU GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE SEQRES 6 A 117 ASP THR LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO SEQRES 7 A 117 PHE HIS GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SEQRES 8 A 117 SER GLY PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER SEQRES 9 A 117 PRO TYR SER TYR SER THR THR ALA VAL VAL THR ASN PRO SEQRES 1 B 117 ALA CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG SEQRES 2 B 117 GLY SER PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG SEQRES 3 B 117 LYS ALA ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY SEQRES 4 B 117 LYS THR SER GLU SER GLY GLU LEU HIS GLY LEU THR THR SEQRES 5 B 117 GLU GLU GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE SEQRES 6 B 117 ASP THR LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO SEQRES 7 B 117 PHE HIS GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SEQRES 8 B 117 SER GLY PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER SEQRES 9 B 117 PRO TYR SER TYR SER THR THR ALA VAL VAL THR ASN PRO HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET NAR A 205 20 HET EDO A 206 8 HET EDO A 207 4 HET EDO A 208 4 HET EDO B 201 8 HET NAR B 202 20 HET CA B 203 1 HET EDO B 204 4 HET EDO B 205 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM NAR NARINGENIN HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 10(C2 H6 O2) FORMUL 7 NAR 2(C15 H12 O5) FORMUL 13 CA CA 2+ FORMUL 16 HOH *218(H2 O) HELIX 1 1 ASP A 74 ALA A 81 1 8 HELIX 2 2 ASP B 74 LEU B 82 1 9 SHEET 1 A 8 SER A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 A 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 A 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 A 8 ARG B 104 SER B 112 -1 N ALA B 108 O THR B 119 SHEET 7 A 8 LEU B 12 ASP B 18 1 N LYS B 15 O ILE B 107 SHEET 8 A 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 B 8 GLU A 54 LEU A 55 0 SHEET 2 B 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 B 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 B 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 B 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 B 8 ARG B 104 SER B 112 -1 N ALA B 108 O THR B 119 SHEET 7 B 8 LEU B 12 ASP B 18 1 N LYS B 15 O ILE B 107 SHEET 8 B 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 C 4 TRP A 41 LYS A 48 0 SHEET 2 C 4 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 C 4 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 C 4 ALA A 91 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 1 D 4 TRP B 41 LYS B 48 0 SHEET 2 D 4 ALA B 29 LYS B 35 -1 N VAL B 32 O ALA B 45 SHEET 3 D 4 GLY B 67 ILE B 73 -1 O GLU B 72 N HIS B 31 SHEET 4 D 4 ALA B 91 ALA B 97 -1 O VAL B 93 N VAL B 71 SITE 1 AC1 6 PHE A 44 GLU A 66 ASP A 99 EDO A 202 SITE 2 AC1 6 HOH A 369 HOH A 410 SITE 1 AC2 4 GLU A 66 ASP A 99 EDO A 201 HOH A 410 SITE 1 AC3 7 SER A 23 PRO A 24 VAL A 122 THR A 123 SITE 2 AC3 7 EDO A 204 HOH A 384 HOH A 408 SITE 1 AC4 5 PRO A 24 ILE A 26 GLU A 51 EDO A 203 SITE 2 AC4 5 HOH A 357 SITE 1 AC5 11 LYS A 15 LEU A 17 ALA A 108 LEU A 110 SITE 2 AC5 11 SER A 117 THR A 119 HOH A 338 HOH A 397 SITE 3 AC5 11 HOH A 404 HOH A 411 SER B 115 SITE 1 AC6 7 ARG A 34 SER A 46 GLY A 47 HIS A 56 SITE 2 AC6 7 GLU A 66 HOH A 311 HOH A 383 SITE 1 AC7 7 ASP A 74 LYS A 76 SER A 77 GLU A 89 SITE 2 AC7 7 HOH A 308 HOH A 319 HOH A 327 SITE 1 AC8 6 ALA A 37 LYS A 48 GLU A 54 LEU A 55 SITE 2 AC8 6 HIS A 56 HOH A 391 SITE 1 AC9 7 PHE B 44 ALA B 45 GLY B 57 LEU B 58 SITE 2 AC9 7 GLU B 63 GLU B 66 ASP B 99 SITE 1 BC1 10 LYS B 15 LEU B 17 ALA B 108 LEU B 110 SITE 2 BC1 10 SER B 117 THR B 119 VAL B 121 HOH B 393 SITE 3 BC1 10 HOH B 397 HOH B 407 SITE 1 BC2 2 SER B 46 ASN B 98 SITE 1 BC3 4 ARG B 34 LYS B 35 GLY B 67 ILE B 68 SITE 1 BC4 8 HIS A 90 GLU A 92 HOH A 375 TRP B 41 SITE 2 BC4 8 LYS B 70 GLU B 92 HOH B 338 HOH B 375 CRYST1 43.734 85.173 65.058 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015371 0.00000