HEADER STRUCTURAL PROTEIN 01-NOV-14 4D51 TITLE CRYSTAL STRUCTURE OF CYMA FROM KLEBSIELLA OXYTOCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: NO HISTIDINE TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA OXYTOCA; SOURCE 3 ORGANISM_TAXID: 571; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DELTA CYOABCD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB22 KEYWDS STRUCTURAL PROTEIN, OUTER MEMBRANE CHANNEL, CYCLODEXTRIN TRANSPORT, KEYWDS 2 BETA BARREL MONOMER EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN DEN BERG,S.P.BHAMIDIMARRI,U.KLEINEKATHOEFER,M.WINTERHALTER REVDAT 5 20-DEC-23 4D51 1 REMARK REVDAT 4 21-FEB-18 4D51 1 AUTHOR JRNL REMARK REVDAT 3 24-JUN-15 4D51 1 JRNL REVDAT 2 10-JUN-15 4D51 1 SOURCE JRNL REVDAT 1 03-JUN-15 4D51 0 JRNL AUTH B.VAN DEN BERG,S.PRATHYUSHA BHAMIDIMARRI, JRNL AUTH 2 J.DAHYABHAI PRAJAPATI,U.KLEINEKATHOFER,M.WINTERHALTER JRNL TITL OUTER-MEMBRANE TRANSLOCATION OF BULKY SMALL MOLECULES BY JRNL TITL 2 PASSIVE DIFFUSION. JRNL REF PROC. NATL. ACAD. SCI. V. 112 E2991 2015 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 26015567 JRNL DOI 10.1073/PNAS.1424835112 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.5371 - 4.3993 0.99 2663 146 0.2000 0.2360 REMARK 3 2 4.3993 - 3.4920 0.99 2559 136 0.1923 0.2595 REMARK 3 3 3.4920 - 3.0507 0.99 2549 139 0.2227 0.3113 REMARK 3 4 3.0507 - 2.7718 1.00 2537 125 0.2526 0.2998 REMARK 3 5 2.7718 - 2.5731 1.00 2511 141 0.2377 0.3264 REMARK 3 6 2.5731 - 2.4214 1.00 2487 148 0.2405 0.3508 REMARK 3 7 2.4214 - 2.3001 1.00 2516 135 0.2394 0.3242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2684 REMARK 3 ANGLE : 1.071 3621 REMARK 3 CHIRALITY : 0.035 348 REMARK 3 PLANARITY : 0.004 478 REMARK 3 DIHEDRAL : 15.481 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2278 -32.8479 -7.9951 REMARK 3 T TENSOR REMARK 3 T11: 0.3685 T22: 0.4913 REMARK 3 T33: 0.4159 T12: 0.0639 REMARK 3 T13: -0.0020 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.2499 L22: 0.3682 REMARK 3 L33: 0.4192 L12: 0.2628 REMARK 3 L13: 0.2429 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.1462 S12: -0.1276 S13: 0.2792 REMARK 3 S21: 0.3523 S22: 0.0840 S23: -0.3175 REMARK 3 S31: -0.0977 S32: -0.1881 S33: 0.1030 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9566 -28.4998 2.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.4164 T22: 0.3733 REMARK 3 T33: 0.3091 T12: 0.0441 REMARK 3 T13: -0.0198 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.3529 L22: 2.5623 REMARK 3 L33: 1.0103 L12: 0.0376 REMARK 3 L13: 0.0835 L23: 0.1980 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.1796 S13: 0.1167 REMARK 3 S21: 0.4730 S22: 0.1071 S23: 0.1296 REMARK 3 S31: -0.1630 S32: -0.1386 S33: -0.0964 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4315 -31.0324 -0.0808 REMARK 3 T TENSOR REMARK 3 T11: 0.4186 T22: 0.3753 REMARK 3 T33: 0.3981 T12: 0.0049 REMARK 3 T13: -0.0547 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.3277 L22: 2.6006 REMARK 3 L33: 1.3469 L12: 1.1316 REMARK 3 L13: -0.8993 L23: -1.3216 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.0987 S13: 0.1809 REMARK 3 S21: 0.5639 S22: 0.0870 S23: -0.2193 REMARK 3 S31: -0.3895 S32: -0.1846 S33: -0.0997 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9140 -33.3638 -4.8774 REMARK 3 T TENSOR REMARK 3 T11: 0.3499 T22: 0.3716 REMARK 3 T33: 0.4748 T12: 0.0096 REMARK 3 T13: -0.0151 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.4824 L22: 0.2800 REMARK 3 L33: 0.3426 L12: 0.4281 REMARK 3 L13: -0.1343 L23: 0.1652 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: 0.0569 S13: 0.0802 REMARK 3 S21: 0.3891 S22: -0.0083 S23: -0.3551 REMARK 3 S31: -0.1508 S32: 0.0624 S33: 0.0866 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2342 -37.7382 -7.4631 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.3617 REMARK 3 T33: 0.3680 T12: 0.0601 REMARK 3 T13: -0.0302 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.7630 L22: 1.7238 REMARK 3 L33: 1.0427 L12: -0.4576 REMARK 3 L13: 0.7585 L23: -0.8445 REMARK 3 S TENSOR REMARK 3 S11: 0.1439 S12: 0.1879 S13: -0.1601 REMARK 3 S21: -0.0226 S22: -0.1668 S23: -0.0600 REMARK 3 S31: 0.1390 S32: 0.0403 S33: -0.0859 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE MUCH LOWER NUMBER OF REFLECTIONS REMARK 3 USED FOR REFINEMENT IS DUE TO CUTTING OFF THE HIGH-RESOLUTION REMARK 3 DATA AT 2.3 A. DATA WERE COLLECTED TO 2.1 A. REMARK 4 REMARK 4 4D51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DEXTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4V3G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG400, 0.4 M NABR, 50 MM GLYCINE REMARK 280 PH 9, PH 9.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.81000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 114.06000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.81000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 114.06000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.30500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.81000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 114.06000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.30500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.81000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 114.06000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 10 REMARK 465 ASP A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 PHE A 14 REMARK 465 ASP A 15 REMARK 465 GLU A 16 REMARK 465 SER A 17 REMARK 465 PHE A 18 REMARK 465 PHE A 19 REMARK 465 SER A 20 REMARK 465 PHE A 21 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 8 CD CE NZ REMARK 480 LYS A 45 CE NZ REMARK 480 GLN A 62 CG CD OE1 NE2 REMARK 480 LYS A 79 CD CE NZ REMARK 480 LYS A 98 CD CE NZ REMARK 480 LYS A 120 CD CE NZ REMARK 480 TYR A 149 CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS A 185 CE NZ REMARK 480 LYS A 215 CD CE NZ REMARK 480 ARG A 221 CZ NH1 NH2 REMARK 480 ASP A 233 CB CG OD1 OD2 REMARK 480 LYS A 249 CE NZ REMARK 480 ARG A 253 CG CD NE REMARK 480 GLU A 280 CG CD OE1 OE2 REMARK 480 ARG A 323 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 266 O HOH A 2037 1.93 REMARK 500 OD1 ASP A 165 O HOH A 2029 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 61 5.37 -67.86 REMARK 500 HIS A 100 119.19 -169.97 REMARK 500 ASN A 167 -113.17 47.09 REMARK 500 ASP A 209 -36.48 -37.40 REMARK 500 ALA A 234 -152.36 -129.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 1325 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 14-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 15-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1325 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D5B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYMA FROM KLEBSIELLA OXYTOCA REMARK 900 RELATED ID: 4D5D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYMA FROM KLEBSIELLA OXYTOCA DBREF 4D51 A 1 324 UNP Q48391 Q48391_KLEOX 23 346 SEQRES 1 A 324 ALA SER ASP GLN ARG GLY TYR LYS PRO GLU ASP VAL ALA SEQRES 2 A 324 PHE ASP GLU SER PHE PHE SER PHE GLY GLY HIS VAL GLY SEQRES 3 A 324 THR SER VAL GLU TYR GLU ASP LYS VAL THR ARG GLY PHE SEQRES 4 A 324 ASN ASN THR ASP LYS LYS GLU LYS THR ILE THR ASN GLU SEQRES 5 A 324 VAL PHE ASN PHE PHE TYR ASN ASN PRO GLN TRP ASN PHE SEQRES 6 A 324 MET GLY PHE TYR SER PHE LYS ILE GLU ASN ARG GLU GLN SEQRES 7 A 324 LYS GLU PRO GLY TYR TYR GLU ASN GLU ASP GLY ILE LYS SEQRES 8 A 324 GLN LEU PHE SER LEU ASN LYS GLY HIS ASP LEU GLY ASN SEQRES 9 A 324 GLY TRP ALA THR GLY LEU ILE TYR GLU LEU GLU TYR THR SEQRES 10 A 324 ARG SER LYS VAL TYR SER PRO ASP VAL SER GLY LEU ARG SEQRES 11 A 324 LYS ASN LEU ALA GLU HIS SER ILE ARG PRO TYR LEU THR SEQRES 12 A 324 TYR TRP ASN ASN ASP TYR ASN MET GLY PHE TYR SER ASN SEQRES 13 A 324 LEU GLU TYR LEU LEU SER LYS GLU ASP ARG ASN ALA TRP SEQRES 14 A 324 GLY LYS ARG GLN GLU GLN GLY TYR SER ALA LEU PHE LYS SEQRES 15 A 324 PRO TYR LYS ARG PHE GLY ASN TRP GLU VAL GLY VAL GLU SEQRES 16 A 324 PHE TYR TYR GLN ILE LYS THR ASN ASP GLU LYS GLN PRO SEQRES 17 A 324 ASP GLY THR ILE ASN GLU LYS SER ASP PHE ASN GLU ARG SEQRES 18 A 324 TYR ILE GLU PRO ILE VAL GLN TYR SER PHE ASP ASP ALA SEQRES 19 A 324 GLY THR LEU TYR THR ARG VAL ARG VAL GLY LYS ASN GLU SEQRES 20 A 324 THR LYS ASN THR ASP ARG SER GLY GLY GLY ASN ALA GLY SEQRES 21 A 324 ILE ASN TYR PHE LYS ASP ILE ARG LYS ALA THR VAL GLY SEQRES 22 A 324 TYR GLU GLN SER ILE GLY GLU SER TRP VAL ALA LYS ALA SEQRES 23 A 324 GLU TYR GLU TYR ALA ASN GLU VAL GLU LYS LYS SER ARG SEQRES 24 A 324 LEU SER GLY TRP GLU ALA ARG ASN LYS SER GLU LEU THR SEQRES 25 A 324 GLN HIS THR PHE TYR ALA GLN ALA LEU TYR ARG PHE HET C8E A1325 9 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE FORMUL 2 C8E C16 H34 O5 FORMUL 3 HOH *44(H2 O) HELIX 1 1 ASN A 167 TRP A 169 5 3 SHEET 1 AA15 GLY A 23 ARG A 37 0 SHEET 2 AA15 SER A 309 PHE A 324 -1 O GLU A 310 N ARG A 37 SHEET 3 AA15 TRP A 282 LYS A 297 -1 O VAL A 283 N LEU A 321 SHEET 4 AA15 ASN A 262 ILE A 278 -1 O PHE A 264 N LYS A 296 SHEET 5 AA15 THR A 236 ASN A 250 -1 O THR A 236 N GLU A 275 SHEET 6 AA15 ILE A 212 SER A 230 -1 O ASP A 217 N LYS A 249 SHEET 7 AA15 TRP A 190 LYS A 206 -1 O GLU A 191 N GLN A 228 SHEET 8 AA15 LYS A 171 PHE A 187 -1 O LYS A 171 N LYS A 206 SHEET 9 AA15 MET A 151 ASP A 165 -1 O GLY A 152 N TYR A 184 SHEET 10 AA15 SER A 127 ASN A 146 -1 O ASN A 132 N ASP A 165 SHEET 11 AA15 TRP A 106 TYR A 122 -1 O ALA A 107 N THR A 143 SHEET 12 AA15 TYR A 83 GLY A 103 -1 O ASN A 86 N TYR A 122 SHEET 13 AA15 PHE A 65 GLU A 80 -1 O MET A 66 N ASN A 97 SHEET 14 AA15 ASP A 43 ASN A 60 -1 O LYS A 45 N LYS A 79 SHEET 15 AA15 GLY A 23 ARG A 37 -1 O HIS A 24 N PHE A 57 SITE 1 AC1 2 TRP A 282 TYR A 322 CRYST1 59.620 228.120 60.610 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016499 0.00000