HEADER HYDROLASE 28-JUN-13 4BVW TITLE IDENTIFICATION OF SMALL MOLECULE INHIBITORS SELECTIVE FOR APO(A) TITLE 2 KRINGLES KIV-7, KIV-10 AND KV. COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN(A); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KRINGLE DOMAIN IV-7, RESIDUES 3781-3859; COMPND 5 SYNONYM: APO(A), LP(A), APOLIPOPROTEIN A; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAC KEYWDS HYDROLASE, CARDIOVASCULAR DISEASE, DRUG DISCOVERY, OPTICAL BIOSENSORS EXPDTA X-RAY DIFFRACTION AUTHOR J.SANDMARK,M.ALTHAGE,G.M.K.ANDERSSON,T.ANTONSSON,S.BLAHO,C.BODIN, AUTHOR 2 J.BOSTROM,Y.CHEN,A.DAHLEN,P.O.ERIKSSON,E.EVERTSSON,T.FEX, AUTHOR 3 O.FJELLSTROM,D.GUSTAFSSON,C.HALLBERG,R.HICKS,E.JARKVIST,C.JOHANSSON, AUTHOR 4 I.KALIES,D.KANG,B.SVALSTEDT KARLSSON,F.KARTBERG,A.LEGNEHED, AUTHOR 5 A.M.LINDQVIST,S.A.MARTINSSON,A.MOBERG,A.U.PETERSSON,M.RIDDERSTROM, AUTHOR 6 A.THELIN,A.TIGERSTROM,J.VINBLAD,B.XU,W.KNECHT REVDAT 2 20-DEC-23 4BVW 1 REMARK REVDAT 1 16-JUL-14 4BVW 0 JRNL AUTH J.SANDMARK,M.ALTHAGE,G.M.K.ANDERSSON,T.ANTONSSON,S.BLAHO, JRNL AUTH 2 C.BODIN,J.BOSTROM,Y.CHEN,A.DAHLEN,P.O.ERIKSSON,E.EVERTSSON, JRNL AUTH 3 T.FEX,O.FJELLSTROM,D.GUSTAFSSON,C.HALLBERG,R.HICKS, JRNL AUTH 4 E.JARKVIST,C.JOHANSSON,I.KALIES,D.KANG,B.SVALSTEDT KARLSSON, JRNL AUTH 5 F.KARTBERG,A.LEGNEHED,A.M.LINDQVIST,S.A.MARTINSSON,A.MOBERG, JRNL AUTH 6 A.U.PETERSSON,M.RIDDERSTROM,A.THELIN,A.TIGERSTROM,J.VINBLAD, JRNL AUTH 7 B.XU,W.KNECHT JRNL TITL SMALL MOLECULES USED TO DECIPHER THE PATHOPHYSIOLOGICAL JRNL TITL 2 ROLES OF THE KRINGLE DOMAINS KIV-7, - 10 AND KV OF JRNL TITL 3 APOLIPOPROTEIN(A) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 9329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.47000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.260 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1397 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1120 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1910 ; 1.236 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2562 ; 3.735 ; 3.009 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 5.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;31.042 ;21.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 189 ;11.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.651 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1645 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 369 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE N-TERMINAL EXTENSION ORIGINATING FROM THE REMARK 3 EXPRESSION VECTOR WAS NOT MODELLED. REMARK 4 REMARK 4 4BVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10414 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I71 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 6000, 0.1 M NAOAC, 12% REMARK 280 ETHYLENE GLYCOL, 1M LISO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.06450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -19 REMARK 465 ILE A -18 REMARK 465 ALA A -17 REMARK 465 ALA A -16 REMARK 465 LYS A -15 REMARK 465 GLU A -14 REMARK 465 GLU A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 SER A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 LYS A -7 REMARK 465 ARG A -6 REMARK 465 SER A -5 REMARK 465 ILE A -4 REMARK 465 ALA A -3 REMARK 465 ARG A -2 REMARK 465 SER A -1 REMARK 465 SER B -19 REMARK 465 ILE B -18 REMARK 465 ALA B -17 REMARK 465 ALA B -16 REMARK 465 LYS B -15 REMARK 465 GLU B -14 REMARK 465 GLU B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 SER B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 LYS B -7 REMARK 465 ARG B -6 REMARK 465 SER B -5 REMARK 465 ILE B -4 REMARK 465 ALA B -3 REMARK 465 ARG B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 37.86 -148.58 REMARK 500 ARG A 47 -130.28 42.05 REMARK 500 ALA A 74 46.35 -76.06 REMARK 500 SER B 14 34.74 -148.70 REMARK 500 ARG B 47 -129.24 40.02 REMARK 500 ALA B 74 49.31 -77.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1079 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1079 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1081 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1080 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1081 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HKY A 1080 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HKY B 1082 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BV5 RELATED DB: PDB REMARK 900 IDENTIFICATION OF SMALL MOLECULE INHIBITORS SELECTIVE FOR APO(A) REMARK 900 KRINGLES KIV-7, KIV-10 AND KV. REMARK 900 RELATED ID: 4BV7 RELATED DB: PDB REMARK 900 IDENTIFICATION OF SMALL MOLECULE INHIBITORS SELECTIVE FOR APO(A) REMARK 900 KRINGLES KIV-7, KIV-10 AND KV. REMARK 900 RELATED ID: 4BVC RELATED DB: PDB REMARK 900 IDENTIFICATION OF SMALL MOLECULE INHIBITORS SELECTIVE FOR APO(A) REMARK 900 KRINGLES KIV-7, KIV-10 AND KV. REMARK 900 RELATED ID: 4BVD RELATED DB: PDB REMARK 900 IDENTIFICATION OF SMALL MOLECULE INHIBITORS SELECTIVE FOR APO(A) REMARK 900 KRINGLES KIV-7, KIV-10 AND KV. REMARK 900 RELATED ID: 4BVV RELATED DB: PDB REMARK 900 IDENTIFICATION OF SMALL MOLECULE INHIBITORS SELECTIVE FOR APO(A) REMARK 900 KRINGLES KIV-7, KIV-10 AND KV. REMARK 999 REMARK 999 SEQUENCE REMARK 999 N74A MUTATION. N-TERMINAL EXTENSION, PART OF THE ALPHA REMARK 999 MATING FACTOR FROM THE EXPRESSION VECTOR, NOT VISIBLE IN REMARK 999 ELECTRON DENSITY. DBREF 4BVW A 0 78 UNP P08519 APOA_HUMAN 3781 3859 DBREF 4BVW B 0 78 UNP P08519 APOA_HUMAN 3781 3859 SEQADV 4BVW SER A -19 UNP P08519 EXPRESSION TAG SEQADV 4BVW ILE A -18 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA A -17 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA A -16 UNP P08519 EXPRESSION TAG SEQADV 4BVW LYS A -15 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLU A -14 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLU A -13 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLY A -12 UNP P08519 EXPRESSION TAG SEQADV 4BVW VAL A -11 UNP P08519 EXPRESSION TAG SEQADV 4BVW SER A -10 UNP P08519 EXPRESSION TAG SEQADV 4BVW LEU A -9 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLU A -8 UNP P08519 EXPRESSION TAG SEQADV 4BVW LYS A -7 UNP P08519 EXPRESSION TAG SEQADV 4BVW ARG A -6 UNP P08519 EXPRESSION TAG SEQADV 4BVW SER A -5 UNP P08519 EXPRESSION TAG SEQADV 4BVW ILE A -4 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA A -3 UNP P08519 EXPRESSION TAG SEQADV 4BVW ARG A -2 UNP P08519 EXPRESSION TAG SEQADV 4BVW SER A -1 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA A 74 UNP P08519 ASN 3855 ENGINEERED MUTATION SEQADV 4BVW SER B -19 UNP P08519 EXPRESSION TAG SEQADV 4BVW ILE B -18 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA B -17 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA B -16 UNP P08519 EXPRESSION TAG SEQADV 4BVW LYS B -15 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLU B -14 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLU B -13 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLY B -12 UNP P08519 EXPRESSION TAG SEQADV 4BVW VAL B -11 UNP P08519 EXPRESSION TAG SEQADV 4BVW SER B -10 UNP P08519 EXPRESSION TAG SEQADV 4BVW LEU B -9 UNP P08519 EXPRESSION TAG SEQADV 4BVW GLU B -8 UNP P08519 EXPRESSION TAG SEQADV 4BVW LYS B -7 UNP P08519 EXPRESSION TAG SEQADV 4BVW ARG B -6 UNP P08519 EXPRESSION TAG SEQADV 4BVW SER B -5 UNP P08519 EXPRESSION TAG SEQADV 4BVW ILE B -4 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA B -3 UNP P08519 EXPRESSION TAG SEQADV 4BVW ARG B -2 UNP P08519 EXPRESSION TAG SEQADV 4BVW SER B -1 UNP P08519 EXPRESSION TAG SEQADV 4BVW ALA B 74 UNP P08519 ASN 3855 ENGINEERED MUTATION SEQRES 1 A 98 SER ILE ALA ALA LYS GLU GLU GLY VAL SER LEU GLU LYS SEQRES 2 A 98 ARG SER ILE ALA ARG SER ASP CYS TYR HIS GLY ASP GLY SEQRES 3 A 98 GLN SER TYR ARG GLY SER PHE SER THR THR VAL THR GLY SEQRES 4 A 98 ARG THR CYS GLN SER TRP SER SER MET THR PRO HIS TRP SEQRES 5 A 98 HIS GLN ARG THR THR GLU TYR TYR PRO ASN GLY GLY LEU SEQRES 6 A 98 THR ARG ASN TYR CYS ARG ASN PRO ASP ALA GLU ILE ARG SEQRES 7 A 98 PRO TRP CYS TYR THR MET ASP PRO SER VAL ARG TRP GLU SEQRES 8 A 98 TYR CYS ALA LEU THR GLN CYS SEQRES 1 B 98 SER ILE ALA ALA LYS GLU GLU GLY VAL SER LEU GLU LYS SEQRES 2 B 98 ARG SER ILE ALA ARG SER ASP CYS TYR HIS GLY ASP GLY SEQRES 3 B 98 GLN SER TYR ARG GLY SER PHE SER THR THR VAL THR GLY SEQRES 4 B 98 ARG THR CYS GLN SER TRP SER SER MET THR PRO HIS TRP SEQRES 5 B 98 HIS GLN ARG THR THR GLU TYR TYR PRO ASN GLY GLY LEU SEQRES 6 B 98 THR ARG ASN TYR CYS ARG ASN PRO ASP ALA GLU ILE ARG SEQRES 7 B 98 PRO TRP CYS TYR THR MET ASP PRO SER VAL ARG TRP GLU SEQRES 8 B 98 TYR CYS ALA LEU THR GLN CYS HET CL A1079 1 HET HKY A1080 13 HET CL A1081 1 HET CL B1079 1 HET CL B1080 1 HET EDO B1081 4 HET HKY B1082 26 HETNAM CL CHLORIDE ION HETNAM HKY 1,2,3,4-TETRAHYDROISOQUINOLINE-6-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 4(CL 1-) FORMUL 4 HKY 2(C10 H11 N O2) FORMUL 8 EDO C2 H6 O2 FORMUL 10 HOH *112(H2 O) SHEET 1 AA 2 CYS A 1 TYR A 2 0 SHEET 2 AA 2 THR A 76 GLN A 77 1 O THR A 76 N TYR A 2 SHEET 1 AB 2 TRP A 60 TYR A 62 0 SHEET 2 AB 2 TRP A 70 TYR A 72 -1 O GLU A 71 N CYS A 61 SHEET 1 BA 2 CYS B 1 TYR B 2 0 SHEET 2 BA 2 THR B 76 GLN B 77 1 O THR B 76 N TYR B 2 SHEET 1 BB 2 TRP B 60 TYR B 62 0 SHEET 2 BB 2 TRP B 70 TYR B 72 -1 O GLU B 71 N CYS B 61 SSBOND 1 CYS A 1 CYS A 78 1555 1555 2.02 SSBOND 2 CYS A 22 CYS A 61 1555 1555 2.01 SSBOND 3 CYS A 50 CYS A 73 1555 1555 2.00 SSBOND 4 CYS B 1 CYS B 78 1555 1555 2.03 SSBOND 5 CYS B 22 CYS B 61 1555 1555 2.02 SSBOND 6 CYS B 50 CYS B 73 1555 1555 2.00 CISPEP 1 THR A 29 PRO A 30 0 1.67 CISPEP 2 THR B 29 PRO B 30 0 1.30 SITE 1 AC1 4 HIS A 3 SER A 8 TYR A 9 HOH A2002 SITE 1 AC2 4 TYR B 40 PRO B 41 ASN B 42 GLY B 43 SITE 1 AC3 2 ARG A 35 HKY A1080 SITE 1 AC4 2 TYR B 2 GLN B 77 SITE 1 AC5 4 ARG A 20 TYR B 2 ILE B 57 GLN B 77 SITE 1 AC6 8 ASP A 54 GLU A 56 TRP A 60 TYR A 62 SITE 2 AC6 8 ARG A 69 TRP A 70 CL A1081 HOH A2054 SITE 1 AC7 7 ASP B 54 GLU B 56 TRP B 60 TYR B 62 SITE 2 AC7 7 ARG B 69 TRP B 70 HOH B2051 CRYST1 34.554 34.129 67.241 90.00 92.76 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028940 0.000000 0.001395 0.00000 SCALE2 0.000000 0.029301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014889 0.00000 MTRIX1 1 -1.000000 0.005047 0.007257 77.62000 1 MTRIX2 1 0.005044 1.000000 -0.000342 10.55000 1 MTRIX3 1 -0.007258 -0.000305 -1.000000 168.30000 1