HEADER CELL ADHESION 30-MAY-13 4BQ8 TITLE CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN-TYPE III DOMAINS 5 AND 6, RESIDUES 883-1083; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: N-LINKED GLYCOSYLATION AT N940; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RGM DOMAIN FAMILY MEMBER B; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: ECTODOMAIN, RESIDUES 50-168; COMPND 11 SYNONYM: REPULSIVE GUIDANCE MOLECULE B, DRG11-RESPONSIVE AXONAL COMPND 12 GUIDANCE AND OUTGROWTH OF NEURITE, DRAGON; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: RGM DOMAIN FAMILY MEMBER B; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: ECTODOMAIN, RESIDUES 169-410; COMPND 18 SYNONYM: REPULSIVE GUIDANCE MOLECULE B, DRG11-RESPONSIVE AXONAL COMPND 19 GUIDANCE AND OUTGROWTH OF NEURITE, DRAGON; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR C.H.BELL,E.HEALEY,S.VAN ERP,B.BISHOP,C.TANG,R.J.C.GILBERT, AUTHOR 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD REVDAT 5 29-JUL-20 4BQ8 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 03-APR-19 4BQ8 1 SOURCE LINK REVDAT 3 17-JUL-13 4BQ8 1 JRNL REVDAT 2 19-JUN-13 4BQ8 1 JRNL REVDAT 1 12-JUN-13 4BQ8 0 JRNL AUTH C.H.BELL,E.HEALEY,S.VAN ERP,B.BISHOP,C.TANG,R.J.C.GILBERT, JRNL AUTH 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD JRNL TITL STRUCTURE OF THE REPULSIVE GUIDANCE MOLECULE (RGM)-NEOGENIN JRNL TITL 2 SIGNALING HUB JRNL REF SCIENCE V. 341 77 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23744777 JRNL DOI 10.1126/SCIENCE.1232322 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2854 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2190 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2694 REMARK 3 BIN R VALUE (WORKING SET) : 0.2162 REMARK 3 BIN FREE R VALUE : 0.2651 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.62730 REMARK 3 B22 (A**2) : 7.62730 REMARK 3 B33 (A**2) : -15.25460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.377 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.419 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.235 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.414 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.237 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2978 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4053 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 996 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 66 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 427 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2978 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 409 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3293 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.42 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|885 - A|984 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.2760 15.6157 -18.8792 REMARK 3 T TENSOR REMARK 3 T11: -0.0609 T22: 0.1023 REMARK 3 T33: -0.0504 T12: -0.0408 REMARK 3 T13: -0.0535 T23: 0.4000 REMARK 3 L TENSOR REMARK 3 L11: 1.5871 L22: 3.4195 REMARK 3 L33: 2.3066 L12: -0.5229 REMARK 3 L13: -0.3034 L23: -1.7525 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.7455 S13: 0.3450 REMARK 3 S21: -0.3104 S22: 0.4705 S23: 0.7093 REMARK 3 S31: -0.4197 S32: -0.4726 S33: -0.5086 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|985 - A|1085 } REMARK 3 ORIGIN FOR THE GROUP (A): 42.2074 -4.6944 16.3531 REMARK 3 T TENSOR REMARK 3 T11: -0.0791 T22: -0.0806 REMARK 3 T33: -0.0305 T12: 0.0211 REMARK 3 T13: 0.0074 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 3.0369 L22: 2.1666 REMARK 3 L33: 2.9000 L12: -0.0319 REMARK 3 L13: 0.1260 L23: -1.4555 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.1873 S13: -0.0716 REMARK 3 S21: 0.1615 S22: 0.0875 S23: -0.0519 REMARK 3 S31: -0.1691 S32: 0.1584 S33: -0.1131 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|138 - C|315 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.3796 -6.2166 7.2608 REMARK 3 T TENSOR REMARK 3 T11: -0.1304 T22: -0.1282 REMARK 3 T33: -0.0342 T12: -0.0224 REMARK 3 T13: 0.0273 T23: 0.1483 REMARK 3 L TENSOR REMARK 3 L11: 3.0142 L22: 1.3508 REMARK 3 L33: 4.7342 L12: 0.6916 REMARK 3 L13: 0.5019 L23: -1.2683 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: 0.4654 S13: 0.1162 REMARK 3 S21: -0.1861 S22: 0.2108 S23: 0.2695 REMARK 3 S31: 0.1626 S32: -0.4417 S33: -0.2923 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { C|316 - C|334 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.9359 -7.7775 32.0819 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: -0.0231 REMARK 3 T33: 0.0325 T12: -0.0111 REMARK 3 T13: 0.1359 T23: 0.1260 REMARK 3 L TENSOR REMARK 3 L11: 0.4996 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 1.1261 REMARK 3 L13: -2.8511 L23: -1.8851 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0084 S13: 0.0126 REMARK 3 S21: 0.1698 S22: 0.0008 S23: 0.2826 REMARK 3 S31: -0.2304 S32: 0.1071 S33: -0.0085 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS AN AUTOCATALYTIC CLEAVAGE SITE REMARK 3 PRESENT IN RGMB (CHAIN B/C), WHICH IS LOCATED BETWEEN RESIDUES REMARK 3 ASP168 AND PRO169. REMARK 4 REMARK 4 4BQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6D REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 82.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.6, 0.18 M REMARK 280 POTASSIUM ACETATE, 18 % PEG 3350, PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.91000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.46000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.95500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.46000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.86500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.46000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.95500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.46000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.86500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 880 REMARK 465 THR A 881 REMARK 465 GLY A 882 REMARK 465 THR A 883 REMARK 465 PRO A 884 REMARK 465 PRO A 911 REMARK 465 LYS A 912 REMARK 465 HIS A 913 REMARK 465 GLN A 914 REMARK 465 LYS A 915 REMARK 465 ILE A 916 REMARK 465 LYS A 1086 REMARK 465 HIS A 1087 REMARK 465 HIS A 1088 REMARK 465 HIS A 1089 REMARK 465 HIS A 1090 REMARK 465 HIS A 1091 REMARK 465 HIS A 1092 REMARK 465 GLU B 47 REMARK 465 THR B 48 REMARK 465 GLY B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 ALA B 52 REMARK 465 GLN B 53 REMARK 465 CYS B 54 REMARK 465 ARG B 55 REMARK 465 ILE B 56 REMARK 465 GLN B 57 REMARK 465 LYS B 58 REMARK 465 CYS B 59 REMARK 465 THR B 60 REMARK 465 THR B 61 REMARK 465 ASP B 62 REMARK 465 PHE B 63 REMARK 465 VAL B 64 REMARK 465 SER B 65 REMARK 465 LEU B 66 REMARK 465 THR B 67 REMARK 465 SER B 68 REMARK 465 HIS B 69 REMARK 465 LEU B 70 REMARK 465 ASN B 71 REMARK 465 SER B 72 REMARK 465 ALA B 73 REMARK 465 VAL B 74 REMARK 465 ASP B 75 REMARK 465 GLY B 76 REMARK 465 PHE B 77 REMARK 465 ASP B 78 REMARK 465 SER B 79 REMARK 465 GLU B 80 REMARK 465 PHE B 81 REMARK 465 CYS B 82 REMARK 465 LYS B 83 REMARK 465 ALA B 84 REMARK 465 LEU B 85 REMARK 465 ARG B 86 REMARK 465 ALA B 87 REMARK 465 TYR B 88 REMARK 465 ALA B 89 REMARK 465 GLY B 90 REMARK 465 CYS B 91 REMARK 465 THR B 92 REMARK 465 GLN B 93 REMARK 465 ARG B 94 REMARK 465 THR B 95 REMARK 465 SER B 96 REMARK 465 LYS B 97 REMARK 465 ALA B 98 REMARK 465 CYS B 99 REMARK 465 ARG B 100 REMARK 465 GLY B 101 REMARK 465 ASN B 102 REMARK 465 LEU B 103 REMARK 465 VAL B 104 REMARK 465 TYR B 105 REMARK 465 HIS B 106 REMARK 465 SER B 107 REMARK 465 ALA B 108 REMARK 465 VAL B 109 REMARK 465 LEU B 110 REMARK 465 GLY B 111 REMARK 465 ILE B 112 REMARK 465 SER B 113 REMARK 465 ASP B 114 REMARK 465 LEU B 115 REMARK 465 MET B 116 REMARK 465 SER B 117 REMARK 465 GLN B 118 REMARK 465 ARG B 119 REMARK 465 ASN B 120 REMARK 465 CYS B 121 REMARK 465 SER B 122 REMARK 465 LYS B 123 REMARK 465 ASP B 124 REMARK 465 GLY B 125 REMARK 465 PRO B 126 REMARK 465 THR B 127 REMARK 465 SER B 128 REMARK 465 SER B 129 REMARK 465 THR B 130 REMARK 465 ASN B 131 REMARK 465 PRO B 132 REMARK 465 GLU B 133 REMARK 465 VAL B 134 REMARK 465 THR B 135 REMARK 465 HIS B 136 REMARK 465 ASP B 137 REMARK 465 HIS B 142 REMARK 465 SER B 143 REMARK 465 HIS B 144 REMARK 465 ALA B 145 REMARK 465 GLY B 146 REMARK 465 ALA B 147 REMARK 465 ARG B 148 REMARK 465 GLU B 149 REMARK 465 HIS B 150 REMARK 465 ARG B 151 REMARK 465 ARG B 152 REMARK 465 GLY B 153 REMARK 465 ASP B 154 REMARK 465 GLN B 155 REMARK 465 ASN B 156 REMARK 465 PRO B 157 REMARK 465 PRO B 158 REMARK 465 ASP C 252 REMARK 465 SER C 253 REMARK 465 ASP C 254 REMARK 465 SER C 265 REMARK 465 GLY C 266 REMARK 465 HIS C 335 REMARK 465 SER C 336 REMARK 465 LEU C 337 REMARK 465 PRO C 338 REMARK 465 ARG C 339 REMARK 465 THR C 340 REMARK 465 SER C 341 REMARK 465 LEU C 342 REMARK 465 VAL C 343 REMARK 465 GLN C 344 REMARK 465 ALA C 345 REMARK 465 TRP C 346 REMARK 465 PRO C 347 REMARK 465 GLY C 348 REMARK 465 TYR C 349 REMARK 465 THR C 350 REMARK 465 LEU C 351 REMARK 465 GLU C 352 REMARK 465 THR C 353 REMARK 465 ALA C 354 REMARK 465 ASN C 355 REMARK 465 THR C 356 REMARK 465 GLN C 357 REMARK 465 CYS C 358 REMARK 465 HIS C 359 REMARK 465 GLU C 360 REMARK 465 LYS C 361 REMARK 465 MET C 362 REMARK 465 PRO C 363 REMARK 465 VAL C 364 REMARK 465 LYS C 365 REMARK 465 ASP C 366 REMARK 465 ILE C 367 REMARK 465 TYR C 368 REMARK 465 PHE C 369 REMARK 465 GLN C 370 REMARK 465 SER C 371 REMARK 465 CYS C 372 REMARK 465 VAL C 373 REMARK 465 PHE C 374 REMARK 465 ASP C 375 REMARK 465 LEU C 376 REMARK 465 LEU C 377 REMARK 465 THR C 378 REMARK 465 THR C 379 REMARK 465 GLY C 380 REMARK 465 ASP C 381 REMARK 465 ALA C 382 REMARK 465 ASN C 383 REMARK 465 PHE C 384 REMARK 465 THR C 385 REMARK 465 ALA C 386 REMARK 465 ALA C 387 REMARK 465 ALA C 388 REMARK 465 HIS C 389 REMARK 465 SER C 390 REMARK 465 ALA C 391 REMARK 465 LEU C 392 REMARK 465 GLU C 393 REMARK 465 ASP C 394 REMARK 465 VAL C 395 REMARK 465 GLU C 396 REMARK 465 ALA C 397 REMARK 465 LEU C 398 REMARK 465 HIS C 399 REMARK 465 PRO C 400 REMARK 465 ARG C 401 REMARK 465 LYS C 402 REMARK 465 GLU C 403 REMARK 465 ARG C 404 REMARK 465 TRP C 405 REMARK 465 HIS C 406 REMARK 465 ILE C 407 REMARK 465 PHE C 408 REMARK 465 PRO C 409 REMARK 465 SER C 410 REMARK 465 GLY C 411 REMARK 465 THR C 412 REMARK 465 LYS C 413 REMARK 465 HIS C 414 REMARK 465 HIS C 415 REMARK 465 HIS C 416 REMARK 465 HIS C 417 REMARK 465 HIS C 418 REMARK 465 HIS C 419 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 892 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 918 152.41 -48.60 REMARK 500 SER A 919 28.55 -66.23 REMARK 500 VAL A 992 109.95 -48.62 REMARK 500 GLU A1013 66.60 -107.94 REMARK 500 ASN A1015 19.45 56.34 REMARK 500 VAL C 183 52.30 38.02 REMARK 500 SER C 208 155.79 -41.10 REMARK 500 CYS C 226 -82.47 -91.25 REMARK 500 ASP C 237 -6.77 84.53 REMARK 500 SER C 302 76.02 -101.77 REMARK 500 VAL C 313 -60.80 -97.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 N-ACETYL-D-GLUCOSAMINE (NAG): N-LINKED GLYCOSYLATION OF REMARK 600 NEO1 ASN940 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BQ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 1 REMARK 900 RELATED ID: 4BQ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 2 REMARK 900 RELATED ID: 4BQ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 1 REMARK 900 RELATED ID: 4BQB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 2 REMARK 900 RELATED ID: 4BQC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1 BOUND TO SOS DBREF 4BQ8 A 883 1083 UNP P97798 NEO1_MOUSE 883 1083 DBREF 4BQ8 B 50 168 UNP Q6NW40 RGMB_HUMAN 50 168 DBREF 4BQ8 C 169 410 UNP Q6NW40 RGMB_HUMAN 169 410 SEQADV 4BQ8 GLU A 880 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 THR A 881 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 GLY A 882 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 GLY A 1084 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 THR A 1085 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 LYS A 1086 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 HIS A 1087 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 HIS A 1088 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 HIS A 1089 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 HIS A 1090 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 HIS A 1091 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 HIS A 1092 UNP P97798 EXPRESSION TAG SEQADV 4BQ8 GLU B 47 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 THR B 48 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 GLY B 49 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 GLY C 411 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 THR C 412 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 LYS C 413 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 HIS C 414 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 HIS C 415 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 HIS C 416 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 HIS C 417 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 HIS C 418 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 HIS C 419 UNP Q6NW40 EXPRESSION TAG SEQADV 4BQ8 GLY C 225 UNP Q6NW40 GLU 225 CONFLICT SEQRES 1 A 213 GLU THR GLY THR PRO MET MET PRO PRO VAL GLY VAL GLN SEQRES 2 A 213 ALA SER ILE LEU SER HIS ASP THR ILE ARG ILE THR TRP SEQRES 3 A 213 ALA ASP ASN SER LEU PRO LYS HIS GLN LYS ILE THR ASP SEQRES 4 A 213 SER ARG TYR TYR THR VAL ARG TRP LYS THR ASN ILE PRO SEQRES 5 A 213 ALA ASN THR LYS TYR LYS ASN ALA ASN ALA THR THR LEU SEQRES 6 A 213 SER TYR LEU VAL THR GLY LEU LYS PRO ASN THR LEU TYR SEQRES 7 A 213 GLU PHE SER VAL MET VAL THR LYS GLY ARG ARG SER SER SEQRES 8 A 213 THR TRP SER MET THR ALA HIS GLY ALA THR PHE GLU LEU SEQRES 9 A 213 VAL PRO THR SER PRO PRO LYS ASP VAL THR VAL VAL SER SEQRES 10 A 213 LYS GLU GLY LYS PRO ARG THR ILE ILE VAL ASN TRP GLN SEQRES 11 A 213 PRO PRO SER GLU ALA ASN GLY LYS ILE THR GLY TYR ILE SEQRES 12 A 213 ILE TYR TYR SER THR ASP VAL ASN ALA GLU ILE HIS ASP SEQRES 13 A 213 TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG LEU THR HIS SEQRES 14 A 213 GLN ILE GLN GLU LEU THR LEU ASP THR PRO TYR TYR PHE SEQRES 15 A 213 LYS ILE GLN ALA ARG ASN SER LYS GLY MET GLY PRO MET SEQRES 16 A 213 SER GLU ALA VAL GLN PHE ARG THR PRO GLY THR LYS HIS SEQRES 17 A 213 HIS HIS HIS HIS HIS SEQRES 1 B 122 GLU THR GLY GLN PRO ALA GLN CYS ARG ILE GLN LYS CYS SEQRES 2 B 122 THR THR ASP PHE VAL SER LEU THR SER HIS LEU ASN SER SEQRES 3 B 122 ALA VAL ASP GLY PHE ASP SER GLU PHE CYS LYS ALA LEU SEQRES 4 B 122 ARG ALA TYR ALA GLY CYS THR GLN ARG THR SER LYS ALA SEQRES 5 B 122 CYS ARG GLY ASN LEU VAL TYR HIS SER ALA VAL LEU GLY SEQRES 6 B 122 ILE SER ASP LEU MET SER GLN ARG ASN CYS SER LYS ASP SEQRES 7 B 122 GLY PRO THR SER SER THR ASN PRO GLU VAL THR HIS ASP SEQRES 8 B 122 PRO CYS ASN TYR HIS SER HIS ALA GLY ALA ARG GLU HIS SEQRES 9 B 122 ARG ARG GLY ASP GLN ASN PRO PRO SER TYR LEU PHE CYS SEQRES 10 B 122 GLY LEU PHE GLY ASP SEQRES 1 C 251 PRO HIS LEU ARG THR PHE LYS ASP ASN PHE GLN THR CYS SEQRES 2 C 251 LYS VAL GLU GLY ALA TRP PRO LEU ILE ASP ASN ASN TYR SEQRES 3 C 251 LEU SER VAL GLN VAL THR ASN VAL PRO VAL VAL PRO GLY SEQRES 4 C 251 SER SER ALA THR ALA THR ASN LYS ILE THR ILE ILE PHE SEQRES 5 C 251 LYS ALA HIS HIS GLY CYS THR ASP GLN LYS VAL TYR GLN SEQRES 6 C 251 ALA VAL THR ASP ASP LEU PRO ALA ALA PHE VAL ASP GLY SEQRES 7 C 251 THR THR SER GLY GLY ASP SER ASP ALA LYS SER LEU ARG SEQRES 8 C 251 ILE VAL GLU ARG GLU SER GLY HIS TYR VAL GLU MET HIS SEQRES 9 C 251 ALA ARG TYR ILE GLY THR THR VAL PHE VAL ARG GLN VAL SEQRES 10 C 251 GLY ARG TYR LEU THR LEU ALA ILE ARG MET PRO GLU ASP SEQRES 11 C 251 LEU ALA MET SER TYR GLU GLU SER GLN ASP LEU GLN LEU SEQRES 12 C 251 CYS VAL ASN GLY CYS PRO LEU SER GLU ARG ILE ASP ASP SEQRES 13 C 251 GLY GLN GLY GLN VAL SER ALA ILE LEU GLY HIS SER LEU SEQRES 14 C 251 PRO ARG THR SER LEU VAL GLN ALA TRP PRO GLY TYR THR SEQRES 15 C 251 LEU GLU THR ALA ASN THR GLN CYS HIS GLU LYS MET PRO SEQRES 16 C 251 VAL LYS ASP ILE TYR PHE GLN SER CYS VAL PHE ASP LEU SEQRES 17 C 251 LEU THR THR GLY ASP ALA ASN PHE THR ALA ALA ALA HIS SEQRES 18 C 251 SER ALA LEU GLU ASP VAL GLU ALA LEU HIS PRO ARG LYS SEQRES 19 C 251 GLU ARG TRP HIS ILE PHE PRO SER GLY THR LYS HIS HIS SEQRES 20 C 251 HIS HIS HIS HIS MODRES 4BQ8 ASN A 940 ASN GLYCOSYLATION SITE HET NAG A2086 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *15(H2 O) HELIX 1 1 GLU A 1032 TRP A 1036 5 5 HELIX 2 2 TYR C 275 GLY C 277 5 3 HELIX 3 3 GLU C 297 MET C 301 1 5 HELIX 4 4 GLN C 310 GLY C 315 1 6 HELIX 5 5 PRO C 317 GLU C 320 5 4 HELIX 6 6 GLY C 325 GLY C 334 1 10 SHEET 1 AA 3 VAL A 889 ILE A 895 0 SHEET 2 AA 3 ILE A 901 ALA A 906 -1 O ARG A 902 N SER A 894 SHEET 3 AA 3 SER A 945 VAL A 948 -1 O TYR A 946 N ILE A 903 SHEET 1 AB 4 LYS A 937 ALA A 941 0 SHEET 2 AB 4 TYR A 921 LYS A 927 -1 O TYR A 922 N ALA A 941 SHEET 3 AB 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927 SHEET 4 AB 4 ARG A 968 SER A 969 -1 O ARG A 968 N LYS A 965 SHEET 1 AC 4 LYS A 937 ALA A 941 0 SHEET 2 AC 4 TYR A 921 LYS A 927 -1 O TYR A 922 N ALA A 941 SHEET 3 AC 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927 SHEET 4 AC 4 ALA A 976 ALA A 979 -1 O ALA A 976 N PHE A 959 SHEET 1 AD 2 ARG A 968 SER A 969 0 SHEET 2 AD 2 LEU A 956 LYS A 965 -1 O LYS A 965 N ARG A 968 SHEET 1 AE 3 LYS A 990 LYS A 997 0 SHEET 2 AE 3 LYS A1000 GLN A1009 -1 N LYS A1000 O LYS A 997 SHEET 3 AE 3 THR A1047 ILE A1050 -1 O HIS A1048 N VAL A1006 SHEET 1 AF 4 VAL A1037 VAL A1042 0 SHEET 2 AF 4 ILE A1018 SER A1026 -1 O TYR A1021 N VAL A1041 SHEET 3 AF 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026 SHEET 4 AF 4 GLY A1070 MET A1074 -1 O GLY A1070 N ASN A1067 SHEET 1 AG 4 VAL A1037 VAL A1042 0 SHEET 2 AG 4 ILE A1018 SER A1026 -1 O TYR A1021 N VAL A1041 SHEET 3 AG 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026 SHEET 4 AG 4 VAL A1078 ARG A1081 -1 O VAL A1078 N PHE A1061 SHEET 1 AH 2 GLY A1070 MET A1074 0 SHEET 2 AH 2 PRO A1058 ASN A1067 -1 O ALA A1065 N GLY A1072 SHEET 1 CA 7 PHE C 178 THR C 180 0 SHEET 2 CA 7 HIS C 170 ARG C 172 -1 O LEU C 171 N GLN C 179 SHEET 3 CA 7 TYR B 160 PHE B 166 -1 O GLY B 164 N ARG C 172 SHEET 4 CA 7 TYR C 288 PRO C 296 -1 O LEU C 291 N LEU B 165 SHEET 5 CA 7 THR C 278 VAL C 285 -1 O THR C 279 N ARG C 294 SHEET 6 CA 7 TYR C 268 ALA C 273 -1 O VAL C 269 N VAL C 282 SHEET 7 CA 7 LEU C 258 GLU C 262 -1 O ARG C 259 N HIS C 272 SHEET 1 CB 4 GLY C 185 ASP C 191 0 SHEET 2 CB 4 LEU C 195 PRO C 203 -1 O VAL C 197 N LEU C 189 SHEET 3 CB 4 THR C 211 PHE C 220 -1 O ALA C 212 N VAL C 202 SHEET 4 CB 4 LYS C 230 VAL C 235 -1 O LYS C 230 N PHE C 220 SSBOND 1 CYS B 139 CYS C 226 1555 1555 2.04 SSBOND 2 CYS B 163 CYS C 312 1555 1555 2.01 SSBOND 3 CYS C 181 CYS C 316 1555 1555 2.05 LINK ND2 ASN A 940 C1 NAG A2086 1555 1555 1.43 CISPEP 1 ILE A 930 PRO A 931 0 -5.97 CRYST1 116.920 116.920 91.820 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010891 0.00000