HEADER CELL ADHESION 26-MAY-12 4AVJ TITLE STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN TITLE 2 COMPLEX WITH A METHANOL TRIAZOL ETHYL PHENYL ALPHA-D-MANNOSIDE AT 2.1 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMH; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LECTIN DOMAIN, RESIDUES 10-167; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS CELL ADHESION, BACTERIAL ADHESIN, TYPE 1 FIMBRIAE, URINARY TRACT KEYWDS 2 INFECTION, VARIABLE IMMUNOGLOBULIN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.WELLENS,M.LAHMANN,M.TOUAIBIA,J.VAUCHER,S.OSCARSON,R.ROY,H.REMAUT, AUTHOR 2 J.BOUCKAERT REVDAT 4 20-DEC-23 4AVJ 1 REMARK LINK REVDAT 3 05-SEP-12 4AVJ 1 JRNL REVDAT 2 18-JUL-12 4AVJ 1 ATOM CONECT MASTER END REVDAT 1 27-JUN-12 4AVJ 0 JRNL AUTH A.WELLENS,M.LAHMANN,M.TOUAIBIA,J.VAUCHER,S.OSCARSON,R.ROY, JRNL AUTH 2 H.REMAUT,J.BOUCKAERT JRNL TITL THE TYROSINE GATE AS A POTENTIAL ENTROPIC LEVER IN THE JRNL TITL 2 RECEPTOR-BINDING SITE OF THE BACTERIAL ADHESIN FIMH. JRNL REF BIOCHEMISTRY V. 51 4790 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22657089 JRNL DOI 10.1021/BI300251R REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8985 - 4.1986 1.00 2815 149 0.1334 0.1813 REMARK 3 2 4.1986 - 3.3377 1.00 2705 142 0.1346 0.1640 REMARK 3 3 3.3377 - 2.9172 1.00 2704 142 0.1479 0.1863 REMARK 3 4 2.9172 - 2.6512 1.00 2673 141 0.1544 0.2366 REMARK 3 5 2.6512 - 2.4615 1.00 2642 139 0.1645 0.2276 REMARK 3 6 2.4615 - 2.3166 1.00 2667 141 0.1707 0.2192 REMARK 3 7 2.3166 - 2.2008 1.00 2666 140 0.1859 0.2441 REMARK 3 8 2.2008 - 2.1051 0.98 2591 136 0.2025 0.2776 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 38.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08070 REMARK 3 B22 (A**2) : -0.08070 REMARK 3 B33 (A**2) : 0.16130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2553 REMARK 3 ANGLE : 1.556 3531 REMARK 3 CHIRALITY : 0.083 410 REMARK 3 PLANARITY : 0.010 447 REMARK 3 DIHEDRAL : 18.523 911 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VCO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M LI2SO4, 100 MM TRIS PH 8.6, 10 MM REMARK 280 NICL2, 0.2 M NON-DETERGENT SULFOBETAINE 201 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.71000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.42000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.42000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2143 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 45 NI NI A 301 1.20 REMARK 500 O HOH B 2067 O HOH B 2125 1.84 REMARK 500 O HOH A 2110 O HOH A 2123 1.92 REMARK 500 OD1 ASP B 100 O HOH B 2071 1.99 REMARK 500 O HOH A 2129 O HOH A 2131 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 50.08 32.93 REMARK 500 TYR A 48 64.66 -151.83 REMARK 500 TYR A 137 -44.17 -134.70 REMARK 500 ASN B 7 49.62 33.82 REMARK 500 TYR B 48 63.45 -151.76 REMARK 500 TYR B 137 -43.15 -135.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2023 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A2030 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2072 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2054 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 NE2 REMARK 620 2 ASP A 47 OD1 95.2 REMARK 620 3 HOH A2075 O 96.6 85.4 REMARK 620 4 HOH A2076 O 99.3 98.1 163.3 REMARK 620 5 HOH A2077 O 100.6 163.5 88.0 84.2 REMARK 620 6 HOH A2081 O 170.0 92.7 77.9 85.6 71.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 45 NE2 REMARK 620 2 ASP B 47 OD1 92.0 REMARK 620 3 HOH B2073 O 105.9 149.7 REMARK 620 4 HOH B2074 O 105.7 92.9 105.0 REMARK 620 5 HOH B2075 O 88.6 90.7 66.1 165.1 REMARK 620 6 HOH B2076 O 158.6 91.0 63.6 95.2 70.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J73 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J73 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ATT RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO REMARK 900 A PROPYNYL PARA METHOXY PHENYL REMARK 900 RELATED ID: 4AUJ RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO REMARK 900 PARA HYDROXYPROPARGYL PHENYL REMARK 900 RELATED ID: 4AUU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO FIMH LECTIN DOMAIN AT 1.5 A RESOLUTION REMARK 900 RELATED ID: 4AUY RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH AN HYDROXYL PROPYNYL PHENYL ALPHA-D-MANNOSIDE AT 2.1 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4AV0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH A METHOXY PHENYL PROPYNYL ALPHA-D-MANNOSIDE AT 2.1 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4AV4 RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO REMARK 900 A PROPYNYL PYRIDINE REMARK 900 RELATED ID: 4AV5 RELATED DB: PDB REMARK 900 STRUCTURE OF A TRICLINIC CRYSTAL OF THE FIMH LECTIN DOMAIN IN REMARK 900 COMPLEX WITH A PROPYNYL BIPHENYL ALPHA-D- MANNOSIDE, AT 1.4 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4AVH RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH A THIOALKYL ALPHA-D- MANNOSIDE AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 4AVI RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH A METHYL ESTER OCTYL ALPHA-D-MANNOSIDE AT 2.4 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4AVK RELATED DB: PDB REMARK 900 STRUCTURE OF TRIGONAL FIMH LECTIN DOMAIN CRYSTAL SOAKED WITH AN REMARK 900 ALPHA-D-MANNOSIDE O-LINKED TO PROPYNYL PYRIDINE AT 2.4A RESOLUTION DBREF 4AVJ A 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 DBREF 4AVJ B 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 SEQRES 1 A 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 A 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 A 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 A 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 A 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 A 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 A 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 A 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 A 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 A 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 A 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 A 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 A 158 PRO THR SEQRES 1 B 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 B 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 B 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 B 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 B 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 B 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 B 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 B 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 B 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 B 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 B 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 B 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 B 158 PRO THR HET SO4 A 180 5 HET J73 A 201 27 HET NI A 301 1 HET SO4 A1160 5 HET J73 B 201 27 HET NI B 301 1 HETNAM SO4 SULFATE ION HETNAM J73 METHANOL TRIAZOL ETHYL PHENYL 1O-ALPHA-D- HETNAM 2 J73 MANNOPYRANOSIDE HETNAM NI NICKEL (II) ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 J73 2(C17 H23 N3 O7) FORMUL 5 NI 2(NI 2+) FORMUL 9 HOH *353(H2 O) HELIX 1 1 TYR A 64 ASN A 70 1 7 HELIX 2 2 TYR B 64 ASN B 70 1 7 SHEET 1 AA 4 ALA A 10 ILE A 11 0 SHEET 2 AA 4 ALA A 2 THR A 5 -1 O CYS A 3 N ILE A 11 SHEET 3 AA 4 ILE A 42 HIS A 45 -1 O PHE A 43 N LYS A 4 SHEET 4 AA 4 LYS A 101 PRO A 102 -1 O LYS A 101 N CYS A 44 SHEET 1 AB 5 GLY A 16 VAL A 22 0 SHEET 2 AB 5 PHE A 142 ALA A 150 1 O GLN A 143 N GLY A 16 SHEET 3 AB 5 LEU A 125 ASN A 135 -1 N ILE A 126 O ILE A 148 SHEET 4 AB 5 ASP A 54 ALA A 63 -1 O TYR A 55 N THR A 134 SHEET 5 AB 5 VAL A 93 TYR A 95 -1 O VAL A 93 N VAL A 56 SHEET 1 AC 4 LEU A 34 ASP A 37 0 SHEET 2 AC 4 VAL A 105 PRO A 111 -1 O LEU A 107 N VAL A 36 SHEET 3 AC 4 PHE A 71 TYR A 77 -1 O SER A 72 N THR A 110 SHEET 4 AC 4 SER A 80 PHE A 84 -1 O SER A 80 N TYR A 77 SHEET 1 AD 2 GLY A 117 ILE A 120 0 SHEET 2 AD 2 VAL A 154 VAL A 156 -1 O VAL A 154 N ALA A 119 SHEET 1 BA 4 ALA B 10 ILE B 11 0 SHEET 2 BA 4 ALA B 2 THR B 5 -1 O CYS B 3 N ILE B 11 SHEET 3 BA 4 ILE B 42 HIS B 45 -1 O PHE B 43 N LYS B 4 SHEET 4 BA 4 LYS B 101 PRO B 102 -1 O LYS B 101 N CYS B 44 SHEET 1 BB 5 GLY B 16 VAL B 22 0 SHEET 2 BB 5 ASP B 141 ALA B 150 1 O GLN B 143 N GLY B 16 SHEET 3 BB 5 LEU B 125 ASN B 135 -1 N ILE B 126 O ILE B 148 SHEET 4 BB 5 ASP B 54 ALA B 63 -1 O TYR B 55 N THR B 134 SHEET 5 BB 5 VAL B 93 TYR B 95 -1 O VAL B 93 N VAL B 56 SHEET 1 BC 4 LEU B 34 ASP B 37 0 SHEET 2 BC 4 VAL B 105 PRO B 111 -1 O LEU B 107 N VAL B 36 SHEET 3 BC 4 PHE B 71 TYR B 77 -1 O SER B 72 N THR B 110 SHEET 4 BC 4 SER B 80 PHE B 84 -1 O SER B 80 N TYR B 77 SHEET 1 BD 2 GLY B 117 ILE B 120 0 SHEET 2 BD 2 VAL B 154 VAL B 156 -1 O VAL B 154 N ALA B 119 SSBOND 1 CYS A 3 CYS A 44 1555 1555 2.03 SSBOND 2 CYS B 3 CYS B 44 1555 1555 2.04 LINK NE2 HIS A 45 NI NI A 301 1555 1555 2.05 LINK OD1 ASP A 47 NI NI A 301 1555 1555 2.05 LINK NI NI A 301 O HOH A2075 1555 1555 1.96 LINK NI NI A 301 O HOH A2076 1555 1555 1.83 LINK NI NI A 301 O HOH A2077 1555 1555 2.11 LINK NI NI A 301 O HOH A2081 1555 1555 2.15 LINK NE2 HIS B 45 NI NI B 301 1555 1555 2.08 LINK OD1 ASP B 47 NI NI B 301 1555 1555 2.08 LINK NI NI B 301 O HOH B2073 1555 1555 2.14 LINK NI NI B 301 O HOH B2074 1555 1555 1.77 LINK NI NI B 301 O HOH B2075 1555 1555 2.15 LINK NI NI B 301 O HOH B2076 1555 1555 2.06 CISPEP 1 PHE A 84 PRO A 85 0 -0.13 CISPEP 2 PHE B 84 PRO B 85 0 -0.10 SITE 1 AC1 3 GLN A 59 ARG A 60 LYS B 4 SITE 1 AC2 11 PHE A 1 ILE A 13 ASN A 46 ASP A 47 SITE 2 AC2 11 TYR A 48 ASP A 54 GLN A 133 ASN A 135 SITE 3 AC2 11 ASP A 140 HOH A2001 HOH A2175 SITE 1 AC3 6 HIS A 45 ASP A 47 HOH A2075 HOH A2076 SITE 2 AC3 6 HOH A2077 HOH A2081 SITE 1 AC4 6 VAL A 112 SER A 113 HOH A2191 TYR B 55 SITE 2 AC4 6 ARG B 92 ARG B 132 SITE 1 AC5 12 PHE B 1 ILE B 13 ASN B 46 ASP B 47 SITE 2 AC5 12 TYR B 48 THR B 51 ILE B 52 ASP B 54 SITE 3 AC5 12 GLN B 133 ASN B 135 ASP B 140 HOH B2001 SITE 1 AC6 6 HIS B 45 ASP B 47 HOH B2073 HOH B2074 SITE 2 AC6 6 HOH B2075 HOH B2076 CRYST1 91.120 91.120 80.130 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010975 0.006336 0.000000 0.00000 SCALE2 0.000000 0.012672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012480 0.00000