HEADER HYDROLASE/IMMUNE SYSTEM 23-JAN-13 3ZKM TITLE BACE2 FAB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR, RESIDUES 75-460; COMPND 5 SYNONYM: ASPARTIC-LIKE PROTEASE 56 KDA, ASPARTYL PROTEASE 1, ASP1, COMPND 6 ASP 1, BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 2, BETA- COMPND 7 SITE APP CLEAVING ENZYME 2, DOWN REGION ASPARTIC PROTEASE, DRAP, M COMPND 8 MEMAPSIN-1, MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1, THETA-SECRETASE COMPND 9 BACE2; COMPND 10 EC: 3.4.23.45; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: FAB HEAVY CHAIN; COMPND 14 CHAIN: C, H; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: FAB LIGHT CHAIN; COMPND 18 CHAIN: D, L; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA CELL; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: HOUSE MOUSE; SOURCE 21 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA CELL KEYWDS HYDROLASE-IMMUNE SYSTEM COMPLEX, HYDROLASE, ASPARTYL PROTEASE-FAB KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.W.BANNER,A.KUGLSTATTER,J.BENZ,M.STIHLE,A.RUF REVDAT 4 20-DEC-23 3ZKM 1 REMARK REVDAT 3 11-MAR-20 3ZKM 1 SEQRES LINK REVDAT 2 05-JUN-13 3ZKM 1 JRNL REVDAT 1 29-MAY-13 3ZKM 0 JRNL AUTH D.W.BANNER,B.GSELL,J.BENZ,J.BERTSCHINGER,D.BURGER,S.BRACK, JRNL AUTH 2 S.CUPPULERI,M.DEBULPAEP,A.GAST,D.GRABULOVSKI,M.HENNIG, JRNL AUTH 3 H.HILPERT,W.HUBER,A.KUGLSTATTER,E.KUSZNIR,T.LAEREMANS, JRNL AUTH 4 H.MATILE,C.MISCENIC,A.RUFER,D.SCHLATTER,J.STEYEART,M.STIHLE, JRNL AUTH 5 R.THOMA,M.WEBER,A.RUF JRNL TITL MAPPING THE CONFORMATIONAL SPACE ACCESSIBLE TO BACE2 USING JRNL TITL 2 SURFACE MUTANTS AND CO-CRYSTALS WITH FAB-FRAGMENTS, JRNL TITL 3 FYNOMERS, AND XAPERONES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1124 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23695257 JRNL DOI 10.1107/S0907444913006574 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0027 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 123528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 12421 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 953 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.715 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 13029 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 17801 ; 1.437 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1662 ; 6.598 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 539 ;35.983 ;24.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2030 ;13.593 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;21.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1981 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9984 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS WERE USED BUT NOT OUTPUT. U VALUES REFINED REMARK 3 INDIVIDUALLY. THERE ARE 2 UNIQUE COMPLEXES RELATED BY A PSEUDO REMARK 3 TRANSLATION. NCS CONSTRAINTS WERE NOT USED. REMARK 4 REMARK 4 3ZKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2EWY, 2AJU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LIS04, 0.1M HEPES PH7.5, 25% REMARK 280 PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.97200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.61650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.55050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.61650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.97200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.55050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 13 REMARK 465 GLY A 174 REMARK 465 LEU A 175 REMARK 465 PRO A 176 REMARK 465 VAL A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ALA A 398 REMARK 465 ALA B 13 REMARK 465 GLY B 174 REMARK 465 LEU B 175 REMARK 465 PRO B 176 REMARK 465 VAL B 177 REMARK 465 ALA B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ALA B 398 REMARK 465 PRO C 218 REMARK 465 THR C 219 REMARK 465 ILE C 220 REMARK 465 LYS C 221 REMARK 465 CYS D 218 REMARK 465 PRO H 218 REMARK 465 THR H 219 REMARK 465 ILE H 220 REMARK 465 LYS H 221 REMARK 465 CYS L 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY C 217 CA C O REMARK 470 ILE H 51 CG1 REMARK 470 GLY H 217 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 341 O HOH A 2110 1.96 REMARK 500 O HOH A 2123 O HOH A 2149 1.97 REMARK 500 O HOH B 2121 O HOH B 2146 2.07 REMARK 500 OD1 ASN B 341 O HOH B 2108 2.12 REMARK 500 O HOH B 2130 O HOH B 2132 2.19 REMARK 500 O SER C 115 O HOH C 2085 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 180 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 210 -82.63 -142.92 REMARK 500 ASP A 236 -75.04 -87.64 REMARK 500 SER A 271 -165.35 -167.72 REMARK 500 SER A 286 4.63 56.22 REMARK 500 SER A 286 4.64 56.22 REMARK 500 ASN A 341 -72.41 -121.09 REMARK 500 ALA B 138 -168.23 -74.21 REMARK 500 TRP B 210 -82.83 -144.74 REMARK 500 ASP B 236 -71.34 -97.17 REMARK 500 SER B 271 -162.81 -167.46 REMARK 500 SER B 286 -1.52 63.98 REMARK 500 SER B 286 -1.17 63.98 REMARK 500 ASN B 341 -69.75 -129.96 REMARK 500 ALA B 392 152.85 -49.26 REMARK 500 PRO C 14 155.15 -47.81 REMARK 500 SER C 15 -39.19 62.17 REMARK 500 GLN C 16 175.84 -53.19 REMARK 500 ARG C 100 -113.70 46.32 REMARK 500 ALA C 102 -138.61 -157.59 REMARK 500 ASP C 104 -62.32 -108.40 REMARK 500 ASP C 176 -5.81 76.26 REMARK 500 ALA D 55 -37.09 69.31 REMARK 500 ASP D 80 112.39 -162.58 REMARK 500 ASN D 95 36.82 -148.67 REMARK 500 THR D 130 21.77 -50.47 REMARK 500 SER D 131 17.40 -162.29 REMARK 500 ASN D 216 59.10 35.90 REMARK 500 SER H 15 -15.62 53.73 REMARK 500 GLN H 16 -178.32 -68.54 REMARK 500 TYR H 99 118.09 -163.16 REMARK 500 ARG H 100 -117.68 50.98 REMARK 500 ALA H 102 -135.71 -156.28 REMARK 500 ALA L 55 -37.69 65.28 REMARK 500 ASP L 80 113.02 -160.13 REMARK 500 ASN L 95 35.72 -144.24 REMARK 500 ASN L 216 20.74 49.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2061 DISTANCE = 6.46 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 1217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZKG RELATED DB: PDB REMARK 900 BACE2 MUTANT APO STRUCTURE REMARK 900 RELATED ID: 3ZKI RELATED DB: PDB REMARK 900 BACE2 MUTANT STRUCTURE WITH LIGAND REMARK 900 RELATED ID: 3ZKN RELATED DB: PDB REMARK 900 BACE2 FAB INHIBITOR COMPLEX REMARK 900 RELATED ID: 3ZKQ RELATED DB: PDB REMARK 900 BACE2 XAPERONE COMPLEX REMARK 900 RELATED ID: 3ZKX RELATED DB: PDB REMARK 900 TERNARY BACE2 XAPERONE COMPLEX REMARK 900 RELATED ID: 3ZL7 RELATED DB: PDB REMARK 900 BACE2 FYNOMER COMPLEX REMARK 900 RELATED ID: 3ZOV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH CHEMICAL LIGAND REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PDB FILE IS NUMBERED AFTER PDB-ENTRY 2EWY WHICH HAS REMARK 999 NUMBERS 62 LESS THAN THE DATA BANK SEQUENCE. REMARK 999 THE FIRST RESIDUE OF THE HEAVY CHAIN IS PYROGLUTAMIC ACID, REMARK 999 AS IN ALL FAB'S.THE MAB SEQUENCE WAS DETERMINED REMARK 999 EXPERIMENTALLY.THE C-TERMINUS OF THE FAB AFTER PAPAIN REMARK 999 CLEAVAGE WAS NOT ACCURATELY DETERMINED. REMARK 999 THE MAB SEQUENCE WAS DETERMINED EXPERIMENTALLY. DBREF 3ZKM A 13 398 UNP Q9Y5Z0 BACE2_HUMAN 75 460 DBREF 3ZKM B 13 398 UNP Q9Y5Z0 BACE2_HUMAN 75 460 DBREF 3ZKM H 1 221 PDB 3ZKM 3ZKM 1 221 DBREF 3ZKM C 1 221 PDB 3ZKM 3ZKM 1 221 DBREF 3ZKM L 1 218 PDB 3ZKM 3ZKM 1 218 DBREF 3ZKM D 1 218 PDB 3ZKM 3ZKM 1 218 SEQRES 1 A 386 ALA ASN PHE LEU ALA MET VAL ASP ASN LEU GLN GLY ASP SEQRES 2 A 386 SER GLY ARG GLY TYR TYR LEU GLU MET LEU ILE GLY THR SEQRES 3 A 386 PRO PRO GLN LYS LEU GLN ILE LEU VAL ASP THR GLY SER SEQRES 4 A 386 SER ASN PHE ALA VAL ALA GLY THR PRO HIS SER TYR ILE SEQRES 5 A 386 ASP THR TYR PHE ASP THR GLU ARG SER SER THR TYR ARG SEQRES 6 A 386 SER LYS GLY PHE ASP VAL THR VAL LYS TYR THR GLN GLY SEQRES 7 A 386 SER TRP THR GLY PHE VAL GLY GLU ASP LEU VAL THR ILE SEQRES 8 A 386 PRO LYS GLY PHE ASN THR SER PHE LEU VAL ASN ILE ALA SEQRES 9 A 386 THR ILE PHE GLU SER GLU ASN PHE PHE LEU PRO GLY ILE SEQRES 10 A 386 LYS TRP ASN GLY ILE LEU GLY LEU ALA TYR ALA THR LEU SEQRES 11 A 386 ALA LYS PRO SER SER SER LEU GLU THR PHE PHE ASP SER SEQRES 12 A 386 LEU VAL THR GLN ALA ASN ILE PRO ASN VAL PHE SER MET SEQRES 13 A 386 GLN MET CYS GLY ALA GLY LEU PRO VAL ALA GLY SER GLY SEQRES 14 A 386 THR ASN GLY GLY SER LEU VAL LEU GLY GLY ILE GLU PRO SEQRES 15 A 386 SER LEU TYR LYS GLY ASP ILE TRP TYR THR PRO ILE LYS SEQRES 16 A 386 GLU GLU TRP TYR TYR GLN ILE GLU ILE LEU LYS LEU GLU SEQRES 17 A 386 ILE GLY GLY GLN SER LEU ASN LEU ASP CYS ARG GLU TYR SEQRES 18 A 386 ASN ALA ASP LYS ALA ILE VAL ASP SER GLY THR THR LEU SEQRES 19 A 386 LEU ARG LEU PRO GLN LYS VAL PHE ASP ALA VAL VAL GLU SEQRES 20 A 386 ALA VAL ALA ARG ALA SER LEU ILE PRO GLU PHE SER ASP SEQRES 21 A 386 GLY PHE TRP THR GLY SER GLN LEU ALA CYS TRP THR ASN SEQRES 22 A 386 SER GLU THR PRO TRP SER TYR PHE PRO LYS ILE SER ILE SEQRES 23 A 386 TYR LEU ARG ASP GLU ASN SER SER ARG SER PHE ARG ILE SEQRES 24 A 386 THR ILE LEU PRO GLN LEU TYR ILE GLN PRO MET MET GLY SEQRES 25 A 386 ALA GLY LEU ASN TYR GLU CYS TYR ARG PHE GLY ILE SER SEQRES 26 A 386 PRO SER THR ASN ALA LEU VAL ILE GLY ALA THR VAL MET SEQRES 27 A 386 GLU GLY PHE TYR VAL ILE PHE ASP ARG ALA GLN LYS ARG SEQRES 28 A 386 VAL GLY PHE ALA ALA SER PRO CYS ALA GLU ILE ALA GLY SEQRES 29 A 386 ALA ALA VAL SER GLU ILE SER GLY PRO PHE SER THR GLU SEQRES 30 A 386 ASP VAL ALA SER ASN CYS VAL PRO ALA SEQRES 1 B 386 ALA ASN PHE LEU ALA MET VAL ASP ASN LEU GLN GLY ASP SEQRES 2 B 386 SER GLY ARG GLY TYR TYR LEU GLU MET LEU ILE GLY THR SEQRES 3 B 386 PRO PRO GLN LYS LEU GLN ILE LEU VAL ASP THR GLY SER SEQRES 4 B 386 SER ASN PHE ALA VAL ALA GLY THR PRO HIS SER TYR ILE SEQRES 5 B 386 ASP THR TYR PHE ASP THR GLU ARG SER SER THR TYR ARG SEQRES 6 B 386 SER LYS GLY PHE ASP VAL THR VAL LYS TYR THR GLN GLY SEQRES 7 B 386 SER TRP THR GLY PHE VAL GLY GLU ASP LEU VAL THR ILE SEQRES 8 B 386 PRO LYS GLY PHE ASN THR SER PHE LEU VAL ASN ILE ALA SEQRES 9 B 386 THR ILE PHE GLU SER GLU ASN PHE PHE LEU PRO GLY ILE SEQRES 10 B 386 LYS TRP ASN GLY ILE LEU GLY LEU ALA TYR ALA THR LEU SEQRES 11 B 386 ALA LYS PRO SER SER SER LEU GLU THR PHE PHE ASP SER SEQRES 12 B 386 LEU VAL THR GLN ALA ASN ILE PRO ASN VAL PHE SER MET SEQRES 13 B 386 GLN MET CYS GLY ALA GLY LEU PRO VAL ALA GLY SER GLY SEQRES 14 B 386 THR ASN GLY GLY SER LEU VAL LEU GLY GLY ILE GLU PRO SEQRES 15 B 386 SER LEU TYR LYS GLY ASP ILE TRP TYR THR PRO ILE LYS SEQRES 16 B 386 GLU GLU TRP TYR TYR GLN ILE GLU ILE LEU LYS LEU GLU SEQRES 17 B 386 ILE GLY GLY GLN SER LEU ASN LEU ASP CYS ARG GLU TYR SEQRES 18 B 386 ASN ALA ASP LYS ALA ILE VAL ASP SER GLY THR THR LEU SEQRES 19 B 386 LEU ARG LEU PRO GLN LYS VAL PHE ASP ALA VAL VAL GLU SEQRES 20 B 386 ALA VAL ALA ARG ALA SER LEU ILE PRO GLU PHE SER ASP SEQRES 21 B 386 GLY PHE TRP THR GLY SER GLN LEU ALA CYS TRP THR ASN SEQRES 22 B 386 SER GLU THR PRO TRP SER TYR PHE PRO LYS ILE SER ILE SEQRES 23 B 386 TYR LEU ARG ASP GLU ASN SER SER ARG SER PHE ARG ILE SEQRES 24 B 386 THR ILE LEU PRO GLN LEU TYR ILE GLN PRO MET MET GLY SEQRES 25 B 386 ALA GLY LEU ASN TYR GLU CYS TYR ARG PHE GLY ILE SER SEQRES 26 B 386 PRO SER THR ASN ALA LEU VAL ILE GLY ALA THR VAL MET SEQRES 27 B 386 GLU GLY PHE TYR VAL ILE PHE ASP ARG ALA GLN LYS ARG SEQRES 28 B 386 VAL GLY PHE ALA ALA SER PRO CYS ALA GLU ILE ALA GLY SEQRES 29 B 386 ALA ALA VAL SER GLU ILE SER GLY PRO PHE SER THR GLU SEQRES 30 B 386 ASP VAL ALA SER ASN CYS VAL PRO ALA SEQRES 1 C 221 PCA VAL GLN LEU LYS GLU SER GLY PRO VAL LEU VAL ALA SEQRES 2 C 221 PRO SER GLN SER LEU PHE ILE SER CYS THR VAL SER GLY SEQRES 3 C 221 PHE SER LEU THR ARG TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 C 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 C 221 ALA GLY GLY THR THR ASN TYR ASN SER ALA PHE MET SER SEQRES 6 C 221 ARG LEU THR ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 C 221 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 C 221 ILE TYR TYR CYS VAL LYS ALA TYR ARG ASN ALA MET ASP SEQRES 9 C 221 TYR TRP GLY GLN GLY THR SER VAL THR VAL SER SER ALA SEQRES 10 C 221 LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL SEQRES 11 C 221 CYS GLY ASP THR SER GLY SER SER VAL THR LEU GLY CYS SEQRES 12 C 221 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR SEQRES 13 C 221 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 C 221 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 C 221 SER VAL THR VAL THR SER SER THR TRP PRO SER GLN SER SEQRES 16 C 221 ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 C 221 VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO THR ILE LYS SEQRES 1 D 218 ASN ILE VAL LEU SER GLN SER PRO GLY SER LEU ALA VAL SEQRES 2 D 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 D 218 LYS SER VAL ASP THR TYR GLY HIS SER PHE ILE HIS TRP SEQRES 4 D 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO ASN LEU LEU ILE SEQRES 5 D 218 HIS LEU ALA SER ASN LEU GLU SER GLY VAL PRO ALA ARG SEQRES 6 D 218 PHE SER GLY ARG GLY SER GLY THR ASP PHE THR LEU THR SEQRES 7 D 218 ILE ASP PRO VAL GLU ALA ASP ASP ALA ALA THR TYR TYR SEQRES 8 D 218 CYS GLN GLN ASN ASN GLU ASP PRO TRP THR PHE GLY GLY SEQRES 9 D 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 D 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 D 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 D 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 D 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 D 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 D 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 D 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 D 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 221 PCA VAL GLN LEU LYS GLU SER GLY PRO VAL LEU VAL ALA SEQRES 2 H 221 PRO SER GLN SER LEU PHE ILE SER CYS THR VAL SER GLY SEQRES 3 H 221 PHE SER LEU THR ARG TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 H 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 H 221 ALA GLY GLY THR THR ASN TYR ASN SER ALA PHE MET SER SEQRES 6 H 221 ARG LEU THR ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 H 221 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 H 221 ILE TYR TYR CYS VAL LYS ALA TYR ARG ASN ALA MET ASP SEQRES 9 H 221 TYR TRP GLY GLN GLY THR SER VAL THR VAL SER SER ALA SEQRES 10 H 221 LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL SEQRES 11 H 221 CYS GLY ASP THR SER GLY SER SER VAL THR LEU GLY CYS SEQRES 12 H 221 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR SEQRES 13 H 221 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 H 221 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 H 221 SER VAL THR VAL THR SER SER THR TRP PRO SER GLN SER SEQRES 16 H 221 ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 H 221 VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO THR ILE LYS SEQRES 1 L 218 ASN ILE VAL LEU SER GLN SER PRO GLY SER LEU ALA VAL SEQRES 2 L 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 218 LYS SER VAL ASP THR TYR GLY HIS SER PHE ILE HIS TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO ASN LEU LEU ILE SEQRES 5 L 218 HIS LEU ALA SER ASN LEU GLU SER GLY VAL PRO ALA ARG SEQRES 6 L 218 PHE SER GLY ARG GLY SER GLY THR ASP PHE THR LEU THR SEQRES 7 L 218 ILE ASP PRO VAL GLU ALA ASP ASP ALA ALA THR TYR TYR SEQRES 8 L 218 CYS GLN GLN ASN ASN GLU ASP PRO TRP THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS MODRES 3ZKM PCA C 1 GLU PYROGLUTAMIC ACID MODRES 3ZKM PCA H 1 GLU PYROGLUTAMIC ACID HET PCA C 1 8 HET PCA H 1 8 HET SO4 A1398 5 HET DMS A1399 4 HET SO4 B1398 5 HET DMS B1399 4 HET GOL C1217 6 HET GOL H1217 6 HETNAM PCA PYROGLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PCA 2(C5 H7 N O3) FORMUL 7 SO4 2(O4 S 2-) FORMUL 8 DMS 2(C2 H6 O S) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *953(H2 O) HELIX 1 1 PHE A 15 VAL A 19 5 5 HELIX 2 2 ASP A 69 SER A 73 5 5 HELIX 3 3 TYR A 139 ALA A 143 5 5 HELIX 4 4 THR A 151 ASN A 161 1 11 HELIX 5 5 GLU A 193 TYR A 197 5 5 HELIX 6 6 ASP A 229 ASN A 234 5 6 HELIX 7 7 GLN A 251 SER A 265 1 15 HELIX 8 8 THR A 276 LEU A 280 5 5 HELIX 9 9 PRO A 289 PHE A 293 5 5 HELIX 10 10 LEU A 314 TYR A 318 1 5 HELIX 11 11 GLY A 346 GLU A 351 1 6 HELIX 12 12 PHE B 15 VAL B 19 5 5 HELIX 13 13 ASP B 69 SER B 73 5 5 HELIX 14 14 TYR B 139 ALA B 143 5 5 HELIX 15 15 THR B 151 ASN B 161 1 11 HELIX 16 16 GLU B 193 TYR B 197 5 5 HELIX 17 17 ASP B 229 ASN B 234 5 6 HELIX 18 18 GLN B 251 SER B 265 1 15 HELIX 19 19 THR B 276 LEU B 280 5 5 HELIX 20 20 PRO B 289 PHE B 293 5 5 HELIX 21 21 LEU B 314 TYR B 318 1 5 HELIX 22 22 GLY B 346 GLU B 351 1 6 HELIX 23 23 ASN C 73 LYS C 75 5 3 HELIX 24 24 GLN C 86 THR C 90 5 5 HELIX 25 25 SER C 159 SER C 161 5 3 HELIX 26 26 PRO C 203 SER C 206 5 4 HELIX 27 27 GLU D 83 ALA D 87 5 5 HELIX 28 28 SER D 125 THR D 130 1 6 HELIX 29 29 LYS D 187 ARG D 192 1 6 HELIX 30 30 ASN H 60 SER H 65 1 6 HELIX 31 31 ASN H 73 LYS H 75 5 3 HELIX 32 32 GLN H 86 THR H 90 5 5 HELIX 33 33 SER H 159 SER H 161 5 3 HELIX 34 34 PRO H 203 SER H 206 5 4 HELIX 35 35 GLU L 83 ALA L 87 5 5 HELIX 36 36 SER L 125 SER L 131 1 7 HELIX 37 37 LYS L 187 GLU L 191 1 5 SHEET 1 AA 2 LEU A 22 ASP A 25 0 SHEET 2 AA 2 GLY A 29 ILE A 36 -1 O GLY A 29 N ASP A 25 SHEET 1 AB 2 ARG A 77 LYS A 86 0 SHEET 2 AB 2 SER A 91 ILE A 103 -1 O TRP A 92 N VAL A 85 SHEET 1 AC 5 GLY A 185 LEU A 189 0 SHEET 2 AC 5 VAL A 165 MET A 170 -1 O SER A 167 N VAL A 188 SHEET 3 AC 5 PHE A 353 ASP A 358 -1 O VAL A 355 N MET A 168 SHEET 4 AC 5 ARG A 363 ALA A 368 -1 O ARG A 363 N ASP A 358 SHEET 5 AC 5 LYS A 198 PRO A 205 -1 O LYS A 198 N ALA A 368 SHEET 1 AD 5 GLN A 224 SER A 225 0 SHEET 2 AD 5 ILE A 216 ILE A 221 -1 O ILE A 221 N GLN A 224 SHEET 3 AD 5 ILE A 296 ARG A 301 -1 O SER A 297 N GLU A 220 SHEET 4 AD 5 ARG A 307 ILE A 313 -1 O PHE A 309 N LEU A 300 SHEET 5 AD 5 SER A 380 SER A 387 -1 O GLU A 381 N THR A 312 SHEET 1 AE 4 ALA A 238 VAL A 240 0 SHEET 2 AE 4 LEU A 343 ILE A 345 1 O LEU A 343 N ILE A 239 SHEET 3 AE 4 LEU A 247 PRO A 250 -1 O ARG A 248 N VAL A 344 SHEET 4 AE 4 ILE A 336 SER A 339 1 O SER A 337 N LEU A 249 SHEET 1 AF 3 CYS A 282 THR A 284 0 SHEET 2 AF 3 TYR A 329 PHE A 334 -1 O GLU A 330 N TRP A 283 SHEET 3 AF 3 ILE A 319 PRO A 321 -1 O GLN A 320 N ARG A 333 SHEET 1 AG 2 GLU A 373 ILE A 374 0 SHEET 2 AG 2 ALA A 377 ALA A 378 -1 O ALA A 377 N ILE A 374 SHEET 1 BA 2 LEU B 22 ASP B 25 0 SHEET 2 BA 2 GLY B 29 ILE B 36 -1 O GLY B 29 N ASP B 25 SHEET 1 BB 2 ARG B 77 LYS B 86 0 SHEET 2 BB 2 SER B 91 ILE B 103 -1 O TRP B 92 N VAL B 85 SHEET 1 BC 5 GLY B 185 LEU B 189 0 SHEET 2 BC 5 VAL B 165 MET B 170 -1 O SER B 167 N VAL B 188 SHEET 3 BC 5 PHE B 353 ASP B 358 -1 O VAL B 355 N MET B 168 SHEET 4 BC 5 ARG B 363 ALA B 368 -1 O ARG B 363 N ASP B 358 SHEET 5 BC 5 LYS B 198 PRO B 205 -1 O LYS B 198 N ALA B 368 SHEET 1 BD 5 GLN B 224 SER B 225 0 SHEET 2 BD 5 ILE B 216 ILE B 221 -1 O ILE B 221 N GLN B 224 SHEET 3 BD 5 ILE B 296 ARG B 301 -1 O SER B 297 N GLU B 220 SHEET 4 BD 5 ARG B 307 ILE B 313 -1 O PHE B 309 N LEU B 300 SHEET 5 BD 5 SER B 380 SER B 387 -1 O GLU B 381 N THR B 312 SHEET 1 BE 4 ALA B 238 VAL B 240 0 SHEET 2 BE 4 LEU B 343 ILE B 345 1 O LEU B 343 N ILE B 239 SHEET 3 BE 4 LEU B 247 PRO B 250 -1 O ARG B 248 N VAL B 344 SHEET 4 BE 4 ILE B 336 SER B 339 1 O SER B 337 N LEU B 249 SHEET 1 BF 3 CYS B 282 THR B 284 0 SHEET 2 BF 3 TYR B 329 PHE B 334 -1 O GLU B 330 N TRP B 283 SHEET 3 BF 3 ILE B 319 PRO B 321 -1 O GLN B 320 N ARG B 333 SHEET 1 BG 2 GLU B 373 ILE B 374 0 SHEET 2 BG 2 ALA B 377 ALA B 378 -1 O ALA B 377 N ILE B 374 SHEET 1 CA 4 GLN C 3 SER C 7 0 SHEET 2 CA 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 CA 4 GLN C 77 MET C 82 -1 O VAL C 78 N CYS C 22 SHEET 4 CA 4 LEU C 67 ASP C 72 -1 O THR C 68 N LYS C 81 SHEET 1 CB 4 LEU C 11 VAL C 12 0 SHEET 2 CB 4 THR C 110 VAL C 114 -1 O THR C 113 N VAL C 12 SHEET 3 CB 4 ALA C 91 TYR C 99 -1 O ALA C 91 N VAL C 112 SHEET 4 CB 4 ALA C 102 TRP C 106 -1 O ALA C 102 N TYR C 99 SHEET 1 CC 6 LEU C 11 VAL C 12 0 SHEET 2 CC 6 THR C 110 VAL C 114 -1 O THR C 113 N VAL C 12 SHEET 3 CC 6 ALA C 91 TYR C 99 -1 O ALA C 91 N VAL C 112 SHEET 4 CC 6 VAL C 34 SER C 40 -1 O HIS C 35 N VAL C 96 SHEET 5 CC 6 GLY C 44 ILE C 51 -1 O GLY C 44 N SER C 40 SHEET 6 CC 6 THR C 57 TYR C 59 -1 O ASN C 58 N VAL C 50 SHEET 1 CD 2 ALA C 102 TRP C 106 0 SHEET 2 CD 2 ALA C 91 TYR C 99 -1 O LYS C 97 N ASP C 104 SHEET 1 CE 4 SER C 123 LEU C 127 0 SHEET 2 CE 4 SER C 138 TYR C 148 -1 O GLY C 142 N LEU C 127 SHEET 3 CE 4 LEU C 177 THR C 187 -1 O TYR C 178 N TYR C 148 SHEET 4 CE 4 VAL C 172 GLN C 174 1 O VAL C 172 N THR C 179 SHEET 1 CF 4 SER C 123 LEU C 127 0 SHEET 2 CF 4 SER C 138 TYR C 148 -1 O GLY C 142 N LEU C 127 SHEET 3 CF 4 LEU C 177 THR C 187 -1 O TYR C 178 N TYR C 148 SHEET 4 CF 4 VAL C 166 THR C 168 -1 O HIS C 167 N SER C 183 SHEET 1 CG 2 VAL C 172 GLN C 174 0 SHEET 2 CG 2 LEU C 177 THR C 187 1 O LEU C 177 N GLN C 174 SHEET 1 CH 3 THR C 154 TRP C 157 0 SHEET 2 CH 3 THR C 197 HIS C 202 -1 O ASN C 199 N THR C 156 SHEET 3 CH 3 THR C 207 LYS C 212 -1 O THR C 207 N HIS C 202 SHEET 1 DA 4 LEU D 4 SER D 7 0 SHEET 2 DA 4 ALA D 19 ALA D 25 -1 O SER D 22 N SER D 7 SHEET 3 DA 4 ASP D 74 ILE D 79 -1 O PHE D 75 N CYS D 23 SHEET 4 DA 4 PHE D 66 SER D 71 -1 O SER D 67 N THR D 78 SHEET 1 DB 4 SER D 10 VAL D 13 0 SHEET 2 DB 4 THR D 106 ILE D 110 1 O LYS D 107 N LEU D 11 SHEET 3 DB 4 ALA D 88 GLN D 94 -1 O ALA D 88 N LEU D 108 SHEET 4 DB 4 THR D 101 PHE D 102 -1 O THR D 101 N GLN D 94 SHEET 1 DC 6 SER D 10 VAL D 13 0 SHEET 2 DC 6 THR D 106 ILE D 110 1 O LYS D 107 N LEU D 11 SHEET 3 DC 6 ALA D 88 GLN D 94 -1 O ALA D 88 N LEU D 108 SHEET 4 DC 6 ILE D 37 GLN D 42 -1 O HIS D 38 N GLN D 93 SHEET 5 DC 6 ASN D 49 HIS D 53 -1 O ASN D 49 N GLN D 41 SHEET 6 DC 6 ASN D 57 LEU D 58 -1 O ASN D 57 N HIS D 53 SHEET 1 DD 2 THR D 101 PHE D 102 0 SHEET 2 DD 2 ALA D 88 GLN D 94 -1 O GLN D 94 N THR D 101 SHEET 1 DE 2 ASP D 30 THR D 31 0 SHEET 2 DE 2 HIS D 34 SER D 35 -1 O HIS D 34 N THR D 31 SHEET 1 DF 4 THR D 118 PHE D 122 0 SHEET 2 DF 4 GLY D 133 PHE D 143 -1 O VAL D 137 N PHE D 122 SHEET 3 DF 4 TYR D 177 THR D 186 -1 O TYR D 177 N PHE D 143 SHEET 4 DF 4 VAL D 163 TRP D 167 -1 O LEU D 164 N THR D 182 SHEET 1 DG 4 SER D 157 ARG D 159 0 SHEET 2 DG 4 ASN D 149 ILE D 154 -1 O TRP D 152 N ARG D 159 SHEET 3 DG 4 SER D 195 THR D 201 -1 O THR D 197 N LYS D 153 SHEET 4 DG 4 ILE D 209 ASN D 214 -1 O ILE D 209 N ALA D 200 SHEET 1 HA 4 GLN H 3 SER H 7 0 SHEET 2 HA 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 HA 4 GLN H 77 MET H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 HA 4 LEU H 67 ASP H 72 -1 O THR H 68 N LYS H 81 SHEET 1 HB 4 LEU H 11 VAL H 12 0 SHEET 2 HB 4 THR H 110 VAL H 114 -1 O THR H 113 N VAL H 12 SHEET 3 HB 4 ALA H 91 TYR H 99 -1 O ALA H 91 N VAL H 112 SHEET 4 HB 4 ALA H 102 TRP H 106 -1 O ALA H 102 N TYR H 99 SHEET 1 HC 6 LEU H 11 VAL H 12 0 SHEET 2 HC 6 THR H 110 VAL H 114 -1 O THR H 113 N VAL H 12 SHEET 3 HC 6 ALA H 91 TYR H 99 -1 O ALA H 91 N VAL H 112 SHEET 4 HC 6 VAL H 34 SER H 40 -1 O HIS H 35 N VAL H 96 SHEET 5 HC 6 GLY H 44 ILE H 51 -1 O GLY H 44 N SER H 40 SHEET 6 HC 6 THR H 57 TYR H 59 -1 O ASN H 58 N VAL H 50 SHEET 1 HD 2 ALA H 102 TRP H 106 0 SHEET 2 HD 2 ALA H 91 TYR H 99 -1 O LYS H 97 N ASP H 104 SHEET 1 HE 4 SER H 123 LEU H 127 0 SHEET 2 HE 4 SER H 138 TYR H 148 -1 O GLY H 142 N LEU H 127 SHEET 3 HE 4 LEU H 177 THR H 187 -1 O TYR H 178 N TYR H 148 SHEET 4 HE 4 VAL H 172 GLN H 174 1 O VAL H 172 N THR H 179 SHEET 1 HF 4 SER H 123 LEU H 127 0 SHEET 2 HF 4 SER H 138 TYR H 148 -1 O GLY H 142 N LEU H 127 SHEET 3 HF 4 LEU H 177 THR H 187 -1 O TYR H 178 N TYR H 148 SHEET 4 HF 4 VAL H 166 THR H 168 -1 O HIS H 167 N SER H 183 SHEET 1 HG 2 VAL H 172 GLN H 174 0 SHEET 2 HG 2 LEU H 177 THR H 187 1 O LEU H 177 N GLN H 174 SHEET 1 HH 3 THR H 154 TRP H 157 0 SHEET 2 HH 3 THR H 197 HIS H 202 -1 O ASN H 199 N THR H 156 SHEET 3 HH 3 THR H 207 LYS H 212 -1 O THR H 207 N HIS H 202 SHEET 1 LA 4 LEU L 4 SER L 7 0 SHEET 2 LA 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 LA 4 ASP L 74 ILE L 79 -1 O PHE L 75 N CYS L 23 SHEET 4 LA 4 PHE L 66 SER L 71 -1 O SER L 67 N THR L 78 SHEET 1 LB 4 SER L 10 VAL L 13 0 SHEET 2 LB 4 THR L 106 ILE L 110 1 O LYS L 107 N LEU L 11 SHEET 3 LB 4 ALA L 88 GLN L 94 -1 O ALA L 88 N LEU L 108 SHEET 4 LB 4 THR L 101 PHE L 102 -1 O THR L 101 N GLN L 94 SHEET 1 LC 6 SER L 10 VAL L 13 0 SHEET 2 LC 6 THR L 106 ILE L 110 1 O LYS L 107 N LEU L 11 SHEET 3 LC 6 ALA L 88 GLN L 94 -1 O ALA L 88 N LEU L 108 SHEET 4 LC 6 ILE L 37 GLN L 42 -1 O HIS L 38 N GLN L 93 SHEET 5 LC 6 ASN L 49 HIS L 53 -1 O ASN L 49 N GLN L 41 SHEET 6 LC 6 ASN L 57 LEU L 58 -1 O ASN L 57 N HIS L 53 SHEET 1 LD 2 THR L 101 PHE L 102 0 SHEET 2 LD 2 ALA L 88 GLN L 94 -1 O GLN L 94 N THR L 101 SHEET 1 LE 2 ASP L 30 THR L 31 0 SHEET 2 LE 2 HIS L 34 SER L 35 -1 O HIS L 34 N THR L 31 SHEET 1 LF 4 THR L 118 PHE L 122 0 SHEET 2 LF 4 GLY L 133 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 LF 4 TYR L 177 THR L 186 -1 O TYR L 177 N PHE L 143 SHEET 4 LF 4 VAL L 163 TRP L 167 -1 O LEU L 164 N THR L 182 SHEET 1 LG 4 SER L 157 ARG L 159 0 SHEET 2 LG 4 ASN L 149 ILE L 154 -1 O TRP L 152 N ARG L 159 SHEET 3 LG 4 SER L 195 THR L 201 -1 O THR L 197 N LYS L 153 SHEET 4 LG 4 ILE L 209 ASN L 214 -1 O ILE L 209 N ALA L 200 SSBOND 1 CYS A 171 CYS A 371 1555 1555 2.82 SSBOND 2 CYS A 230 CYS A 395 1555 1555 2.07 SSBOND 3 CYS A 282 CYS A 331 1555 1555 2.04 SSBOND 4 CYS B 171 CYS B 371 1555 1555 2.06 SSBOND 5 CYS B 230 CYS B 395 1555 1555 2.06 SSBOND 6 CYS B 282 CYS B 331 1555 1555 2.05 SSBOND 7 CYS C 22 CYS C 95 1555 1555 2.05 SSBOND 8 CYS C 143 CYS C 198 1555 1555 2.05 SSBOND 9 CYS D 23 CYS D 92 1555 1555 2.07 SSBOND 10 CYS D 138 CYS D 198 1555 1555 2.02 SSBOND 11 CYS H 22 CYS H 95 1555 1555 2.05 SSBOND 12 CYS H 143 CYS H 198 1555 1555 2.06 SSBOND 13 CYS L 23 CYS L 92 1555 1555 2.09 SSBOND 14 CYS L 138 CYS L 198 1555 1555 2.02 LINK C PCA C 1 N VAL C 2 1555 1555 1.33 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 THR A 38 PRO A 39 0 -2.47 CISPEP 2 LYS A 144 PRO A 145 0 1.70 CISPEP 3 GLY A 384 PRO A 385 0 2.89 CISPEP 4 THR B 38 PRO B 39 0 -4.76 CISPEP 5 LYS B 144 PRO B 145 0 -2.40 CISPEP 6 GLY B 384 PRO B 385 0 0.61 CISPEP 7 PHE C 149 PRO C 150 0 -0.35 CISPEP 8 GLU C 151 PRO C 152 0 2.47 CISPEP 9 TRP C 191 PRO C 192 0 9.08 CISPEP 10 SER D 7 PRO D 8 0 -8.83 CISPEP 11 ASP D 80 PRO D 81 0 -2.26 CISPEP 12 ASP D 98 PRO D 99 0 -16.10 CISPEP 13 ASP D 98 PRO D 99 0 13.73 CISPEP 14 TYR D 144 PRO D 145 0 4.66 CISPEP 15 PHE H 149 PRO H 150 0 -3.09 CISPEP 16 GLU H 151 PRO H 152 0 2.84 CISPEP 17 TRP H 191 PRO H 192 0 6.37 CISPEP 18 SER L 7 PRO L 8 0 -4.87 CISPEP 19 ASP L 80 PRO L 81 0 -0.83 CISPEP 20 ASP L 98 PRO L 99 0 -10.78 CISPEP 21 ASP L 98 PRO L 99 0 8.51 CISPEP 22 TYR L 144 PRO L 145 0 4.92 SITE 1 AC1 6 GLU A 98 LEU A 112 VAL A 113 ASN A 114 SITE 2 AC1 6 GLU A 150 SER A 155 SITE 1 AC2 3 GLN A 279 CYS A 282 TRP A 283 SITE 1 AC3 6 GLU B 98 LEU B 112 VAL B 113 ASN B 114 SITE 2 AC3 6 GLU B 150 SER B 155 SITE 1 AC4 2 GLN B 279 CYS B 282 SITE 1 AC5 7 ARG C 38 LYS C 43 GLU C 46 ALA C 62 SITE 2 AC5 7 PHE C 63 ARG C 66 HOH C2028 SITE 1 AC6 7 ARG H 38 LYS H 43 GLU H 46 ALA H 62 SITE 2 AC6 7 PHE H 63 ARG H 66 HOH H2027 CRYST1 67.944 161.101 163.233 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014718 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006126 0.00000