HEADER TRANSFERASE 07-DEC-12 3ZEW TITLE CRYSTAL STRUCTURE OF EPHB4 IN COMPLEX WITH STAUROSPORINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 598-892; COMPND 5 SYNONYM: EPHB4, HEPATOMA TRANSMEMBRANE KINASE, TYROSINE-PROTEIN COMPND 6 KINASE TYRO11; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS TRANSFERASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,R.OVERMAN,C.TRUMAN,M.MCALISTER,T.K.ATTWOOD REVDAT 5 28-JUN-17 3ZEW 1 REMARK REVDAT 4 07-MAY-14 3ZEW 1 JRNL REVDAT 3 09-APR-14 3ZEW 1 JRNL REVDAT 2 05-MAR-14 3ZEW 1 JRNL REVDAT 1 25-DEC-13 3ZEW 0 JRNL AUTH R.C.OVERMAN,J.E.DEBRECZENI,C.M.TRUMAN,M.S.MCALISTER, JRNL AUTH 2 T.K.ATTWOOD JRNL TITL COMPLETING THE STRUCTURAL FAMILY PORTRAIT OF THE HUMAN EPHB JRNL TITL 2 TYROSINE KINASE DOMAINS JRNL REF PROTEIN SCI. V. 23 627 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24677421 JRNL DOI 10.1002/PRO.2445 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 22618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.21 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2956 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2467 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2806 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.2812 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87380 REMARK 3 B22 (A**2) : -1.16730 REMARK 3 B33 (A**2) : 0.29350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.438 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.506 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.306 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.532 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.313 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4236 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5774 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1438 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 99 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 687 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4236 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 556 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4961 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.66 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.66 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 3ZEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : DTSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 33.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.220 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.33 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.35500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 SER A 596 REMARK 465 SER A 597 REMARK 465 ASP A 598 REMARK 465 PRO A 599 REMARK 465 ASN A 600 REMARK 465 GLU A 601 REMARK 465 ALA A 602 REMARK 465 VAL A 603 REMARK 465 ARG A 604 REMARK 465 GLU A 605 REMARK 465 PHE A 606 REMARK 465 ALA A 607 REMARK 465 LYS A 608 REMARK 465 LYS A 650 REMARK 465 GLY A 651 REMARK 465 GLY A 652 REMARK 465 TYR A 653 REMARK 465 GLU A 766 REMARK 465 GLU A 767 REMARK 465 ASN A 768 REMARK 465 LEU A 778 REMARK 465 GLY A 779 REMARK 465 GLY A 780 REMARK 465 ARG A 889 REMARK 465 GLU A 890 REMARK 465 ASN A 891 REMARK 465 GLY A 892 REMARK 465 GLY B 595 REMARK 465 SER B 596 REMARK 465 SER B 597 REMARK 465 ASP B 598 REMARK 465 PRO B 599 REMARK 465 ASN B 600 REMARK 465 GLU B 601 REMARK 465 ALA B 602 REMARK 465 VAL B 603 REMARK 465 ARG B 604 REMARK 465 GLU B 605 REMARK 465 PHE B 606 REMARK 465 ALA B 607 REMARK 465 LYS B 608 REMARK 465 PRO B 637 REMARK 465 GLY B 638 REMARK 465 LYS B 650 REMARK 465 GLY B 651 REMARK 465 GLY B 652 REMARK 465 TYR B 653 REMARK 465 LEU B 761 REMARK 465 SER B 762 REMARK 465 ARG B 763 REMARK 465 PHE B 764 REMARK 465 LEU B 765 REMARK 465 GLU B 766 REMARK 465 GLU B 767 REMARK 465 ASN B 768 REMARK 465 SER B 769 REMARK 465 SER B 770 REMARK 465 ASP B 771 REMARK 465 PRO B 772 REMARK 465 THR B 773 REMARK 465 PTR B 774 REMARK 465 THR B 775 REMARK 465 SER B 776 REMARK 465 SER B 777 REMARK 465 LEU B 778 REMARK 465 GLY B 779 REMARK 465 GLY B 780 REMARK 465 LYS B 781 REMARK 465 ALA B 888 REMARK 465 ARG B 889 REMARK 465 GLU B 890 REMARK 465 ASN B 891 REMARK 465 GLY B 892 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 626 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 635 NZ REMARK 470 LYS A 639 CG CD CE NZ REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 ARG A 656 CD NE CZ NH1 NH2 REMARK 470 GLN A 657 CG CD OE1 NE2 REMARK 470 ARG A 658 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 659 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 765 CG CD1 CD2 REMARK 470 ASP A 771 CG OD1 OD2 REMARK 470 LYS A 781 CG CD CE NZ REMARK 470 ARG A 795 CD NE CZ NH1 NH2 REMARK 470 LYS A 796 CG CD CE NZ REMARK 470 ASP A 823 CG OD1 OD2 REMARK 470 LYS A 876 CE NZ REMARK 470 LYS A 885 CG CD CE NZ REMARK 470 LYS B 616 CG CD CE NZ REMARK 470 GLU B 619 CD OE1 OE2 REMARK 470 ARG B 633 CD NE CZ NH1 NH2 REMARK 470 LYS B 635 CG CD CE NZ REMARK 470 LYS B 639 CG CD CE NZ REMARK 470 LYS B 640 CG CD CE NZ REMARK 470 LYS B 647 CD CE NZ REMARK 470 THR B 654 OG1 CG2 REMARK 470 ARG B 656 CD NE CZ NH1 NH2 REMARK 470 ARG B 658 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 659 CD NE CZ NH1 NH2 REMARK 470 GLU B 660 CG CD OE1 OE2 REMARK 470 LYS B 876 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 618 -159.04 -121.95 REMARK 500 GLU A 697 -32.84 -39.77 REMARK 500 ASN A 708 47.10 -104.41 REMARK 500 ARG A 739 -8.65 69.26 REMARK 500 ASP A 758 79.91 57.83 REMARK 500 SER A 770 -122.42 61.42 REMARK 500 TRP A 822 -138.26 56.34 REMARK 500 GLU B 618 -142.96 -122.72 REMARK 500 ASN B 708 46.42 -99.35 REMARK 500 ARG B 739 -22.89 76.33 REMARK 500 TRP B 822 -131.42 47.79 REMARK 500 ASN B 880 78.38 -119.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STU A 1889 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STU B 1888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1890 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1889 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1891 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1890 DBREF 3ZEW A 598 892 UNP P54760 EPHB4_HUMAN 598 892 DBREF 3ZEW B 598 892 UNP P54760 EPHB4_HUMAN 598 892 SEQADV 3ZEW GLY A 595 UNP P54760 EXPRESSION TAG SEQADV 3ZEW SER A 596 UNP P54760 EXPRESSION TAG SEQADV 3ZEW SER A 597 UNP P54760 EXPRESSION TAG SEQADV 3ZEW GLY B 595 UNP P54760 EXPRESSION TAG SEQADV 3ZEW SER B 596 UNP P54760 EXPRESSION TAG SEQADV 3ZEW SER B 597 UNP P54760 EXPRESSION TAG SEQRES 1 A 298 GLY SER SER ASP PRO ASN GLU ALA VAL ARG GLU PHE ALA SEQRES 2 A 298 LYS GLU ILE ASP VAL SER TYR VAL LYS ILE GLU GLU VAL SEQRES 3 A 298 ILE GLY ALA GLY GLU PHE GLY GLU VAL CYS ARG GLY ARG SEQRES 4 A 298 LEU LYS ALA PRO GLY LYS LYS GLU SER CYS VAL ALA ILE SEQRES 5 A 298 LYS THR LEU LYS GLY GLY TYR THR GLU ARG GLN ARG ARG SEQRES 6 A 298 GLU PHE LEU SER GLU ALA SER ILE MET GLY GLN PHE GLU SEQRES 7 A 298 HIS PRO ASN ILE ILE ARG LEU GLU GLY VAL VAL THR ASN SEQRES 8 A 298 SER MET PRO VAL MET ILE LEU THR GLU PHE MET GLU ASN SEQRES 9 A 298 GLY ALA LEU ASP SER PHE LEU ARG LEU ASN ASP GLY GLN SEQRES 10 A 298 PHE THR VAL ILE GLN LEU VAL GLY MET LEU ARG GLY ILE SEQRES 11 A 298 ALA SER GLY MET ARG TYR LEU ALA GLU MET SER TYR VAL SEQRES 12 A 298 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER SEQRES 13 A 298 ASN LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG SEQRES 14 A 298 PHE LEU GLU GLU ASN SER SER ASP PRO THR PTR THR SER SEQRES 15 A 298 SER LEU GLY GLY LYS ILE PRO ILE ARG TRP THR ALA PRO SEQRES 16 A 298 GLU ALA ILE ALA PHE ARG LYS PHE THR SER ALA SER ASP SEQRES 17 A 298 ALA TRP SER TYR GLY ILE VAL MET TRP GLU VAL MET SER SEQRES 18 A 298 PHE GLY GLU ARG PRO TYR TRP ASP MET SER ASN GLN ASP SEQRES 19 A 298 VAL ILE ASN ALA ILE GLU GLN ASP TYR ARG LEU PRO PRO SEQRES 20 A 298 PRO PRO ASP CYS PRO THR SER LEU HIS GLN LEU MET LEU SEQRES 21 A 298 ASP CYS TRP GLN LYS ASP ARG ASN ALA ARG PRO ARG PHE SEQRES 22 A 298 PRO GLN VAL VAL SER ALA LEU ASP LYS MET ILE ARG ASN SEQRES 23 A 298 PRO ALA SER LEU LYS ILE VAL ALA ARG GLU ASN GLY SEQRES 1 B 298 GLY SER SER ASP PRO ASN GLU ALA VAL ARG GLU PHE ALA SEQRES 2 B 298 LYS GLU ILE ASP VAL SER TYR VAL LYS ILE GLU GLU VAL SEQRES 3 B 298 ILE GLY ALA GLY GLU PHE GLY GLU VAL CYS ARG GLY ARG SEQRES 4 B 298 LEU LYS ALA PRO GLY LYS LYS GLU SER CYS VAL ALA ILE SEQRES 5 B 298 LYS THR LEU LYS GLY GLY TYR THR GLU ARG GLN ARG ARG SEQRES 6 B 298 GLU PHE LEU SER GLU ALA SER ILE MET GLY GLN PHE GLU SEQRES 7 B 298 HIS PRO ASN ILE ILE ARG LEU GLU GLY VAL VAL THR ASN SEQRES 8 B 298 SER MET PRO VAL MET ILE LEU THR GLU PHE MET GLU ASN SEQRES 9 B 298 GLY ALA LEU ASP SER PHE LEU ARG LEU ASN ASP GLY GLN SEQRES 10 B 298 PHE THR VAL ILE GLN LEU VAL GLY MET LEU ARG GLY ILE SEQRES 11 B 298 ALA SER GLY MET ARG TYR LEU ALA GLU MET SER TYR VAL SEQRES 12 B 298 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER SEQRES 13 B 298 ASN LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG SEQRES 14 B 298 PHE LEU GLU GLU ASN SER SER ASP PRO THR PTR THR SER SEQRES 15 B 298 SER LEU GLY GLY LYS ILE PRO ILE ARG TRP THR ALA PRO SEQRES 16 B 298 GLU ALA ILE ALA PHE ARG LYS PHE THR SER ALA SER ASP SEQRES 17 B 298 ALA TRP SER TYR GLY ILE VAL MET TRP GLU VAL MET SER SEQRES 18 B 298 PHE GLY GLU ARG PRO TYR TRP ASP MET SER ASN GLN ASP SEQRES 19 B 298 VAL ILE ASN ALA ILE GLU GLN ASP TYR ARG LEU PRO PRO SEQRES 20 B 298 PRO PRO ASP CYS PRO THR SER LEU HIS GLN LEU MET LEU SEQRES 21 B 298 ASP CYS TRP GLN LYS ASP ARG ASN ALA ARG PRO ARG PHE SEQRES 22 B 298 PRO GLN VAL VAL SER ALA LEU ASP LYS MET ILE ARG ASN SEQRES 23 B 298 PRO ALA SER LEU LYS ILE VAL ALA ARG GLU ASN GLY MODRES 3ZEW PTR A 774 TYR O-PHOSPHOTYROSINE HET PTR A 774 16 HET STU A1889 35 HET SO4 A1890 5 HET SO4 A1891 5 HET STU B1888 35 HET SO4 B1889 5 HET SO4 B1890 5 HETNAM PTR O-PHOSPHOTYROSINE HETNAM STU STAUROSPORINE HETNAM SO4 SULFATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 3 STU 2(C28 H26 N4 O3) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *110(H2 O) HELIX 1 1 ASP A 611 SER A 613 5 3 HELIX 2 2 THR A 654 GLN A 670 1 17 HELIX 3 3 LEU A 701 ASN A 708 1 8 HELIX 4 4 THR A 713 MET A 734 1 22 HELIX 5 5 ALA A 742 ARG A 744 5 3 HELIX 6 6 PRO A 783 THR A 787 5 5 HELIX 7 7 ALA A 788 PHE A 794 1 7 HELIX 8 8 THR A 798 SER A 815 1 18 HELIX 9 9 SER A 825 GLN A 835 1 11 HELIX 10 10 PRO A 846 TRP A 857 1 12 HELIX 11 11 ASP A 860 ARG A 864 5 5 HELIX 12 12 ARG A 866 ASN A 880 1 15 HELIX 13 13 ASP B 611 SER B 613 5 3 HELIX 14 14 THR B 654 GLN B 670 1 17 HELIX 15 15 LEU B 701 ASN B 708 1 8 HELIX 16 16 THR B 713 MET B 734 1 22 HELIX 17 17 ALA B 742 ARG B 744 5 3 HELIX 18 18 PRO B 783 THR B 787 5 5 HELIX 19 19 ALA B 788 ARG B 795 1 8 HELIX 20 20 THR B 798 SER B 815 1 18 HELIX 21 21 SER B 825 GLN B 835 1 11 HELIX 22 22 PRO B 846 TRP B 857 1 12 HELIX 23 23 ARG B 866 ASN B 880 1 15 HELIX 24 24 PRO B 881 ILE B 886 5 6 SHEET 1 AA 5 VAL A 615 ALA A 623 0 SHEET 2 AA 5 GLU A 628 LEU A 634 -1 O VAL A 629 N ILE A 621 SHEET 3 AA 5 SER A 642 THR A 648 -1 O SER A 642 N LEU A 634 SHEET 4 AA 5 MET A 690 GLU A 694 -1 O ILE A 691 N LYS A 647 SHEET 5 AA 5 LEU A 679 VAL A 683 -1 N GLU A 680 O LEU A 692 SHEET 1 AB 3 GLY A 699 ALA A 700 0 SHEET 2 AB 3 ILE A 746 VAL A 748 -1 N VAL A 748 O GLY A 699 SHEET 3 AB 3 CYS A 754 VAL A 756 -1 O LYS A 755 N LEU A 747 SHEET 1 AC 2 TYR A 736 VAL A 737 0 SHEET 2 AC 2 ARG A 763 PHE A 764 -1 O ARG A 763 N VAL A 737 SHEET 1 AD 2 PTR A 774 THR A 775 0 SHEET 2 AD 2 LYS A 796 PHE A 797 -1 O PHE A 797 N PTR A 774 SHEET 1 BA 5 VAL B 615 ALA B 623 0 SHEET 2 BA 5 GLU B 628 LEU B 634 -1 O VAL B 629 N ILE B 621 SHEET 3 BA 5 SER B 642 THR B 648 -1 O SER B 642 N LEU B 634 SHEET 4 BA 5 MET B 690 GLU B 694 -1 O ILE B 691 N LYS B 647 SHEET 5 BA 5 LEU B 679 VAL B 683 -1 N GLU B 680 O LEU B 692 SHEET 1 BB 3 GLY B 699 ALA B 700 0 SHEET 2 BB 3 ILE B 746 VAL B 748 -1 N VAL B 748 O GLY B 699 SHEET 3 BB 3 CYS B 754 VAL B 756 -1 O LYS B 755 N LEU B 747 LINK N PTR A 774 C THR A 773 1555 1555 1.35 LINK C PTR A 774 N THR A 775 1555 1555 1.34 CISPEP 1 MET A 687 PRO A 688 0 -2.36 CISPEP 2 MET B 687 PRO B 688 0 0.02 SITE 1 AC1 13 ILE A 621 GLY A 622 ALA A 645 LYS A 647 SITE 2 AC1 13 GLU A 664 THR A 693 GLU A 694 PHE A 695 SITE 3 AC1 13 MET A 696 GLY A 699 ARG A 744 LEU A 747 SITE 4 AC1 13 SER A 757 SITE 1 AC2 12 ILE B 621 GLY B 622 ALA B 645 GLU B 664 SITE 2 AC2 12 THR B 693 GLU B 694 PHE B 695 MET B 696 SITE 3 AC2 12 GLY B 699 ARG B 744 LEU B 747 SER B 757 SITE 1 AC3 2 ARG A 722 ARG A 729 SITE 1 AC4 3 ARG B 722 ARG B 729 HOH B2005 SITE 1 AC5 2 LYS A 876 ARG A 879 SITE 1 AC6 2 ARG B 879 ASN B 880 CRYST1 52.170 88.710 80.780 90.00 103.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019168 0.000000 0.004443 0.00000 SCALE2 0.000000 0.011273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012707 0.00000