HEADER TRANSCRIPTION 30-NOV-11 3UVK TITLE CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH THE WDR5-INTERACTING MOTIF TITLE 2 OF MLL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-334; COMPND 5 SYNONYM: WDR5, BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE MLL2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: WDR5-INTERACTING MOTIF (UNP RESIDUES 5337-5347); COMPND 11 SYNONYM: ALL1-RELATED PROTEIN, LYSINE N-METHYLTRANSFERASE 2B, KMT2B, COMPND 12 MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA PROTEIN 2; COMPND 13 EC: 2.1.1.43; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS TRITHORAX, CHROMATIN BIOLOGY, BETA-PROPELLER, SCAFFOLDING, HISTONE KEYWDS 2 H3, NUCLEUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,H.LEE,J.S.BRUNZELLE,J.-F.COUTURE REVDAT 4 13-SEP-23 3UVK 1 REMARK SEQADV REVDAT 3 30-MAY-12 3UVK 1 JRNL REVDAT 2 08-FEB-12 3UVK 1 JRNL REVDAT 1 14-DEC-11 3UVK 0 JRNL AUTH P.ZHANG,H.LEE,J.S.BRUNZELLE,J.F.COUTURE JRNL TITL THE PLASTICITY OF WDR5 PEPTIDE-BINDING CLEFT ENABLES THE JRNL TITL 2 BINDING OF THE SET1 FAMILY OF HISTONE METHYLTRANSFERASES. JRNL REF NUCLEIC ACIDS RES. V. 40 4237 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22266653 JRNL DOI 10.1093/NAR/GKR1235 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 54732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2509 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3408 ; 2.206 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 7.741 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;34.136 ;25.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;13.038 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;25.715 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1817 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1570 ; 2.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2541 ; 3.709 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 939 ; 5.249 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 862 ; 7.296 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2509 ; 2.848 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4270 9.6710 -17.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.0126 REMARK 3 T33: 0.0180 T12: 0.0048 REMARK 3 T13: -0.0063 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.4089 L22: 0.1219 REMARK 3 L33: 0.9901 L12: -0.0746 REMARK 3 L13: -0.0947 L23: 0.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.0244 S13: -0.0010 REMARK 3 S21: -0.0382 S22: 0.0064 S23: -0.0131 REMARK 3 S31: -0.0094 S32: 0.0028 S33: -0.0290 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5062 B 5072 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6690 24.6590 -20.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.0174 REMARK 3 T33: 0.0888 T12: 0.0440 REMARK 3 T13: 0.0428 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 6.3168 L22: 1.2330 REMARK 3 L33: 3.4643 L12: -1.6538 REMARK 3 L13: 4.6434 L23: -1.3718 REMARK 3 S TENSOR REMARK 3 S11: -0.3118 S12: -0.1496 S13: 0.4313 REMARK 3 S21: 0.1632 S22: 0.0493 S23: 0.0442 REMARK 3 S31: -0.2877 S32: -0.1257 S33: 0.2625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3UVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12718 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 31.907 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 47.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 2H13 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM SULFATE, 24% PEG3350, REMARK 280 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 323K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.41350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.90750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.24800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.90750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.41350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.24800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 ILE A 210 REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 TYR A 243 REMARK 465 SER A 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 213 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 396 O HOH A 510 1.58 REMARK 500 O HOH A 379 O HOH A 502 1.80 REMARK 500 C6 BTB A 2160 O HOH A 446 1.87 REMARK 500 O HOH A 12 O HOH A 508 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 LEU A 206 O HOH A 494 2454 1.90 REMARK 500 O GLY A 299 O HOH A 459 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 195 CB CYS A 195 SG -0.097 REMARK 500 LYS A 328 CD LYS A 328 CE 0.192 REMARK 500 LYS A 328 CE LYS A 328 NZ -0.155 REMARK 500 GLY B5062 C GLY B5062 O 0.134 REMARK 500 CYS B5063 CB CYS B5063 SG -0.183 REMARK 500 ARG B5065 CG ARG B5065 CD -0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 125 CB - CG - CD1 ANGL. DEV. = 13.9 DEGREES REMARK 500 LYS A 328 CD - CE - NZ ANGL. DEV. = -24.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 54.42 -140.72 REMARK 500 GLU A 151 0.94 84.51 REMARK 500 ASN A 214 13.18 80.89 REMARK 500 LEU A 234 40.73 -80.93 REMARK 500 LYS A 259 -36.71 -132.50 REMARK 500 ASN A 281 11.47 81.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 2160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6920 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UVL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH THE WDR5-INTERACTING REMARK 900 MOTIF OF MLL3 REMARK 900 RELATED ID: 3UVM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH THE WDR5-INTERACTING REMARK 900 MOTIF OF MLL4 REMARK 900 RELATED ID: 3UVN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH THE WDR5-INTERACTING REMARK 900 MOTIF OF SET1A REMARK 900 RELATED ID: 3UVO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH THE WDR5-INTERACTING REMARK 900 MOTIF OF SET1B DBREF 3UVK A 21 334 UNP P61964 WDR5_HUMAN 21 334 DBREF 3UVK B 5062 5072 UNP O14686 MLL2_HUMAN 5337 5347 SEQADV 3UVK GLY A 17 UNP P61964 EXPRESSION TAG SEQADV 3UVK ALA A 18 UNP P61964 EXPRESSION TAG SEQADV 3UVK MET A 19 UNP P61964 EXPRESSION TAG SEQADV 3UVK GLY A 20 UNP P61964 EXPRESSION TAG SEQRES 1 A 318 GLY ALA MET GLY SER SER ALA THR GLN SER LYS PRO THR SEQRES 2 A 318 PRO VAL LYS PRO ASN TYR ALA LEU LYS PHE THR LEU ALA SEQRES 3 A 318 GLY HIS THR LYS ALA VAL SER SER VAL LYS PHE SER PRO SEQRES 4 A 318 ASN GLY GLU TRP LEU ALA SER SER SER ALA ASP LYS LEU SEQRES 5 A 318 ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS SEQRES 6 A 318 THR ILE SER GLY HIS LYS LEU GLY ILE SER ASP VAL ALA SEQRES 7 A 318 TRP SER SER ASP SER ASN LEU LEU VAL SER ALA SER ASP SEQRES 8 A 318 ASP LYS THR LEU LYS ILE TRP ASP VAL SER SER GLY LYS SEQRES 9 A 318 CYS LEU LYS THR LEU LYS GLY HIS SER ASN TYR VAL PHE SEQRES 10 A 318 CYS CYS ASN PHE ASN PRO GLN SER ASN LEU ILE VAL SER SEQRES 11 A 318 GLY SER PHE ASP GLU SER VAL ARG ILE TRP ASP VAL LYS SEQRES 12 A 318 THR GLY LYS CYS LEU LYS THR LEU PRO ALA HIS SER ASP SEQRES 13 A 318 PRO VAL SER ALA VAL HIS PHE ASN ARG ASP GLY SER LEU SEQRES 14 A 318 ILE VAL SER SER SER TYR ASP GLY LEU CYS ARG ILE TRP SEQRES 15 A 318 ASP THR ALA SER GLY GLN CYS LEU LYS THR LEU ILE ASP SEQRES 16 A 318 ASP ASP ASN PRO PRO VAL SER PHE VAL LYS PHE SER PRO SEQRES 17 A 318 ASN GLY LYS TYR ILE LEU ALA ALA THR LEU ASP ASN THR SEQRES 18 A 318 LEU LYS LEU TRP ASP TYR SER LYS GLY LYS CYS LEU LYS SEQRES 19 A 318 THR TYR THR GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE SEQRES 20 A 318 ALA ASN PHE SER VAL THR GLY GLY LYS TRP ILE VAL SER SEQRES 21 A 318 GLY SER GLU ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN SEQRES 22 A 318 THR LYS GLU ILE VAL GLN LYS LEU GLN GLY HIS THR ASP SEQRES 23 A 318 VAL VAL ILE SER THR ALA CYS HIS PRO THR GLU ASN ILE SEQRES 24 A 318 ILE ALA SER ALA ALA LEU GLU ASN ASP LYS THR ILE LYS SEQRES 25 A 318 LEU TRP LYS SER ASP CYS SEQRES 1 B 11 GLY CYS ALA ARG SER GLU PRO LYS ILE LEU THR HET BTB A2160 14 HET SO4 A6920 5 HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION HETSYN BTB BIS-TRIS BUFFER FORMUL 3 BTB C8 H19 N O5 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *206(H2 O) HELIX 1 1 CYS B 5063 GLU B 5067 5 5 SHEET 1 A 4 ALA A 36 LEU A 41 0 SHEET 2 A 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 A 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 A 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 B 4 VAL A 48 PHE A 53 0 SHEET 2 B 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 49 SHEET 3 B 4 LEU A 68 GLY A 73 -1 O LYS A 70 N SER A 62 SHEET 4 B 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 C 4 ILE A 90 TRP A 95 0 SHEET 2 C 4 LEU A 101 SER A 106 -1 O VAL A 103 N ALA A 94 SHEET 3 C 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 C 4 LYS A 120 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 D 4 VAL A 132 PHE A 137 0 SHEET 2 D 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 D 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 D 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 E 4 VAL A 174 PHE A 179 0 SHEET 2 E 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 E 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 E 4 CYS A 205 LEU A 209 -1 O LEU A 206 N ILE A 197 SHEET 1 F 4 VAL A 217 PHE A 222 0 SHEET 2 F 4 ILE A 229 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 F 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 F 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 G 4 ALA A 264 SER A 267 0 SHEET 2 G 4 TRP A 273 GLY A 277 -1 O TRP A 273 N SER A 267 SHEET 3 G 4 LEU A 282 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 G 4 ILE A 293 GLN A 298 -1 O VAL A 294 N ILE A 285 SITE 1 AC1 11 TRP A 95 SER A 96 SER A 97 PHE A 137 SITE 2 AC1 11 ASN A 138 PRO A 139 SER A 141 HOH A 346 SITE 3 AC1 11 HOH A 427 HOH A 446 SO4 A6920 SITE 1 AC2 8 HOH A 16 HIS A 178 LYS A 221 HOH A 393 SITE 2 AC2 8 HOH A 407 HOH A 424 HOH A 519 BTB A2160 CRYST1 48.827 68.496 87.815 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011388 0.00000