HEADER HYDROLASE 05-JUL-11 3SQE TITLE CRYSTAL STRUCTURE OF PRETHROMBIN-2 MUTANT S195A IN THE ALTERNATIVE TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN, HEAVY CHAIN; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: UNP RESIDUES 333-622; COMPND 5 EC: 3.4.21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS SERINE PROTEASE, PRETHROMBIN-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.POZZI,Z.CHEN,E.DI CERA REVDAT 2 23-MAY-12 3SQE 1 JRNL REVDAT 1 30-NOV-11 3SQE 0 JRNL AUTH N.POZZI,Z.CHEN,F.ZAPATA,L.A.PELC,S.BARRANCO-MEDINA,E.DI CERA JRNL TITL CRYSTAL STRUCTURES OF PRETHROMBIN-2 REVEAL ALTERNATIVE JRNL TITL 2 CONFORMATIONS UNDER IDENTICAL SOLUTION CONDITIONS AND THE JRNL TITL 3 MECHANISM OF ZYMOGEN ACTIVATION. JRNL REF BIOCHEMISTRY V. 50 10195 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 22049947 JRNL DOI 10.1021/BI2015019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.VIJAYALAKSHMI,K.P.PADMANABHAN,K.G.MANN,A.TULINSKY REMARK 1 TITL THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-, AND REMARK 1 TITL 2 PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE REMARK 1 TITL 3 BINDING TO THROMBIN. REMARK 1 REF PROTEIN SCI. V. 3 2254 1994 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 7756983 REMARK 1 DOI 10.1002/PRO.5560031211 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 19193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3301 ; 1.288 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.230 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.762 ;23.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;16.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.515 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1863 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1460 ; 0.977 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2359 ; 1.843 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 979 ; 2.185 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 942 ; 3.649 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 13 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5044 6.8612 -0.1091 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.1801 REMARK 3 T33: 0.0765 T12: 0.0290 REMARK 3 T13: -0.0078 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.2352 L22: 1.5972 REMARK 3 L33: 2.9460 L12: 0.1332 REMARK 3 L13: 3.2528 L23: -0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0758 S12: 0.3393 S13: 0.0592 REMARK 3 S21: -0.1832 S22: 0.0542 S23: 0.0714 REMARK 3 S31: -0.1596 S32: 0.2121 S33: 0.0216 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 14 E 17 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1610 4.1620 14.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1712 REMARK 3 T33: 0.1346 T12: 0.0208 REMARK 3 T13: -0.0190 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.7584 L22: 0.9744 REMARK 3 L33: 2.2077 L12: 1.5391 REMARK 3 L13: -2.7628 L23: -0.3264 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: -0.1203 S13: -0.0045 REMARK 3 S21: -0.0328 S22: -0.0179 S23: 0.0632 REMARK 3 S31: 0.0525 S32: 0.1169 S33: 0.0843 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 18 E 59 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5730 -6.3380 12.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.1529 REMARK 3 T33: 0.1101 T12: 0.0143 REMARK 3 T13: -0.0107 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.2906 L22: 0.5548 REMARK 3 L33: 0.8648 L12: -0.0342 REMARK 3 L13: 0.4983 L23: 0.4008 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: 0.0272 S13: -0.0263 REMARK 3 S21: -0.0177 S22: -0.0269 S23: -0.0070 REMARK 3 S31: 0.1774 S32: 0.0352 S33: -0.0650 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 60 E 83 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3435 -11.1884 8.6979 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.1596 REMARK 3 T33: 0.1229 T12: 0.0450 REMARK 3 T13: -0.0084 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 0.7293 L22: 0.5301 REMARK 3 L33: 1.7669 L12: 0.2528 REMARK 3 L13: 1.1030 L23: 0.0712 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: 0.1222 S13: -0.0737 REMARK 3 S21: -0.0816 S22: -0.0119 S23: 0.0390 REMARK 3 S31: 0.1756 S32: 0.2150 S33: -0.0192 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 84 E 112 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8710 -0.2180 17.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.1313 REMARK 3 T33: 0.1322 T12: 0.0071 REMARK 3 T13: -0.0011 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.8074 L22: 0.0284 REMARK 3 L33: 1.8219 L12: -0.1768 REMARK 3 L13: 0.5309 L23: -0.1904 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0640 S13: 0.0057 REMARK 3 S21: 0.0596 S22: -0.0161 S23: -0.0709 REMARK 3 S31: 0.0921 S32: 0.0194 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 113 E 147 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7730 4.1270 12.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.1325 REMARK 3 T33: 0.1110 T12: 0.0051 REMARK 3 T13: 0.0004 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.6521 L22: 0.8446 REMARK 3 L33: 0.5542 L12: -0.2356 REMARK 3 L13: 0.2544 L23: 0.3845 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.0486 S13: 0.0030 REMARK 3 S21: -0.0057 S22: -0.0108 S23: 0.1007 REMARK 3 S31: -0.0578 S32: -0.0042 S33: 0.0233 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 148 E 167 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8320 -6.0100 21.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1303 REMARK 3 T33: 0.1474 T12: -0.0721 REMARK 3 T13: 0.0314 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.0922 L22: 0.9729 REMARK 3 L33: 1.9846 L12: -0.5964 REMARK 3 L13: 0.1644 L23: 1.1341 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.1578 S13: -0.2419 REMARK 3 S21: 0.0634 S22: -0.1297 S23: 0.1870 REMARK 3 S31: 0.1127 S32: -0.3356 S33: 0.0606 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 168 E 246 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3714 3.2952 21.4854 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.2178 REMARK 3 T33: 0.1264 T12: -0.0019 REMARK 3 T13: 0.0074 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.2226 L22: 0.1969 REMARK 3 L33: 0.5267 L12: -0.3454 REMARK 3 L13: 0.3884 L23: 0.1215 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: -0.3090 S13: -0.0764 REMARK 3 S21: 0.0524 S22: 0.0310 S23: 0.0459 REMARK 3 S31: 0.0391 S32: -0.1338 S33: 0.0120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB066522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1HAG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 11% PEG8000, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.02750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU E 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE E 7 -87.29 -125.36 REMARK 500 HIS E 71 -56.22 -129.42 REMARK 500 ILE E 79 -57.12 -123.13 REMARK 500 ARG E 187 47.38 -106.91 REMARK 500 SER E 214 -138.81 -112.03 REMARK 500 CYS E 220 47.43 -98.86 REMARK 500 ASP E 221 -119.12 -95.58 REMARK 500 ASP E 222 -26.98 165.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HAG RELATED DB: PDB REMARK 900 THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-AND REMARK 900 PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE REMARK 900 BINDING TO THROMBIN REMARK 900 RELATED ID: 3SQH RELATED DB: PDB DBREF 3SQE E 1C 247 UNP P00734 THRB_HUMAN 333 622 SEQADV 3SQE ALA E 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQRES 1 E 290 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 E 290 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 E 290 TYR ILE ASP GLY ARG ILE VAL GLU GLY SER ASP ALA GLU SEQRES 4 E 290 ILE GLY MET SER PRO TRP GLN VAL MET LEU PHE ARG LYS SEQRES 5 E 290 SER PRO GLN GLU LEU LEU CYS GLY ALA SER LEU ILE SER SEQRES 6 E 290 ASP ARG TRP VAL LEU THR ALA ALA HIS CYS LEU LEU TYR SEQRES 7 E 290 PRO PRO TRP ASP LYS ASN PHE THR GLU ASN ASP LEU LEU SEQRES 8 E 290 VAL ARG ILE GLY LYS HIS SER ARG THR ARG TYR GLU ARG SEQRES 9 E 290 ASN ILE GLU LYS ILE SER MET LEU GLU LYS ILE TYR ILE SEQRES 10 E 290 HIS PRO ARG TYR ASN TRP ARG GLU ASN LEU ASP ARG ASP SEQRES 11 E 290 ILE ALA LEU MET LYS LEU LYS LYS PRO VAL ALA PHE SER SEQRES 12 E 290 ASP TYR ILE HIS PRO VAL CYS LEU PRO ASP ARG GLU THR SEQRES 13 E 290 ALA ALA SER LEU LEU GLN ALA GLY TYR LYS GLY ARG VAL SEQRES 14 E 290 THR GLY TRP GLY ASN LEU LYS GLU THR TRP THR ALA ASN SEQRES 15 E 290 VAL GLY LYS GLY GLN PRO SER VAL LEU GLN VAL VAL ASN SEQRES 16 E 290 LEU PRO ILE VAL GLU ARG PRO VAL CYS LYS ASP SER THR SEQRES 17 E 290 ARG ILE ARG ILE THR ASP ASN MET PHE CYS ALA GLY TYR SEQRES 18 E 290 LYS PRO ASP GLU GLY LYS ARG GLY ASP ALA CYS GLU GLY SEQRES 19 E 290 ASP ALA GLY GLY PRO PHE VAL MET LYS SER PRO PHE ASN SEQRES 20 E 290 ASN ARG TRP TYR GLN MET GLY ILE VAL SER TRP GLY GLU SEQRES 21 E 290 GLY CYS ASP ARG ASP GLY LYS TYR GLY PHE TYR THR HIS SEQRES 22 E 290 VAL PHE ARG LEU LYS LYS TRP ILE GLN LYS VAL ILE ASP SEQRES 23 E 290 GLN PHE GLY GLU HET GOL E 301 6 HET GOL E 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *210(H2 O) HELIX 1 1 PHE E 7 SER E 11 5 5 HELIX 2 2 THR E 14B SER E 14I 1 8 HELIX 3 3 ALA E 55 CYS E 58 5 4 HELIX 4 4 PRO E 60B ASP E 60E 5 4 HELIX 5 5 THR E 60I ASN E 62 5 3 HELIX 6 6 ASP E 125 LEU E 130 1 9 HELIX 7 7 GLY E 142 THR E 149 1 8 HELIX 8 8 GLU E 164 ASP E 170 1 7 HELIX 9 9 ASP E 189 GLY E 193 5 5 HELIX 10 10 LEU E 234 GLY E 246 1 13 SHEET 1 A 7 SER E 20 ASP E 21 0 SHEET 2 A 7 GLN E 156 PRO E 161 -1 O VAL E 157 N SER E 20 SHEET 3 A 7 LYS E 135 GLY E 140 -1 N GLY E 140 O GLN E 156 SHEET 4 A 7 PRO E 198 LYS E 202 -1 O VAL E 200 N ARG E 137 SHEET 5 A 7 TRP E 207 VAL E 213 -1 O TYR E 208 N MET E 201 SHEET 6 A 7 GLY E 226 HIS E 230 -1 O THR E 229 N ILE E 212 SHEET 7 A 7 MET E 180 ALA E 183 -1 N ALA E 183 O GLY E 226 SHEET 1 B 7 LYS E 81 SER E 83 0 SHEET 2 B 7 LEU E 64 ILE E 68 -1 N ILE E 68 O LYS E 81 SHEET 3 B 7 GLN E 30 ARG E 35 -1 N PHE E 34 O LEU E 65 SHEET 4 B 7 GLU E 39 LEU E 46 -1 O GLU E 39 N ARG E 35 SHEET 5 B 7 TRP E 51 THR E 54 -1 O LEU E 53 N SER E 45 SHEET 6 B 7 ALA E 104 LEU E 108 -1 O ALA E 104 N THR E 54 SHEET 7 B 7 LEU E 85 ILE E 90 -1 N GLU E 86 O LYS E 107 SHEET 1 C 2 LEU E 60 TYR E 60A 0 SHEET 2 C 2 LYS E 60F ASN E 60G-1 O LYS E 60F N TYR E 60A SSBOND 1 CYS E 1 CYS E 122 1555 1555 2.08 SSBOND 2 CYS E 42 CYS E 58 1555 1555 2.04 SSBOND 3 CYS E 168 CYS E 182 1555 1555 2.02 SSBOND 4 CYS E 191 CYS E 220 1555 1555 2.03 CISPEP 1 SER E 36A PRO E 37 0 -6.48 SITE 1 AC1 6 LEU E 130 ILE E 162 VAL E 163 PHE E 181 SITE 2 AC1 6 CYS E 182 HOH E 282 SITE 1 AC2 5 ARG E 165 ASP E 178 HOH E 324 HOH E 327 SITE 2 AC2 5 HOH E 352 CRYST1 44.378 58.055 52.880 90.00 98.24 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022534 0.000000 0.003265 0.00000 SCALE2 0.000000 0.017225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019108 0.00000