HEADER VIRAL PROTEIN 30-AUG-10 3ONY TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NORWALK VIRUS STRAIN VIETNAM 026 IN TITLE 2 COMPLEX WITH FUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-538); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 STRAIN: VIETNAM 026; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS CAPSID PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.HANSMAN,C.BIERTUMPFEL,L.CHEN,I.GEORGIEV,J.S.MCLELLAN,K.KATAYAMA, AUTHOR 2 P.D.KWONG REVDAT 3 29-JUL-20 3ONY 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 SITE REVDAT 2 22-JUN-11 3ONY 1 JRNL REVDAT 1 11-MAY-11 3ONY 0 JRNL AUTH G.S.HANSMAN,C.BIERTUMPFEL,I.GEORGIEV,J.S.MCLELLAN,L.CHEN, JRNL AUTH 2 T.ZHOU,K.KATAYAMA,P.D.KWONG JRNL TITL CRYSTAL STRUCTURES OF GII.10 AND GII.12 NOROVIRUS PROTRUDING JRNL TITL 2 DOMAINS IN COMPLEX WITH HISTO-BLOOD GROUP ANTIGENS REVEAL JRNL TITL 3 DETAILS FOR A POTENTIAL SITE OF VULNERABILITY. JRNL REF J.VIROL. V. 85 6687 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21525337 JRNL DOI 10.1128/JVI.00246-11 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 99983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 5035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6684 - 5.7291 1.00 3612 164 0.1861 0.2022 REMARK 3 2 5.7291 - 4.5556 1.00 3475 182 0.1335 0.1563 REMARK 3 3 4.5556 - 3.9822 1.00 3435 187 0.1209 0.1410 REMARK 3 4 3.9822 - 3.6192 1.00 3391 210 0.1487 0.1564 REMARK 3 5 3.6192 - 3.3604 1.00 3361 171 0.1681 0.1893 REMARK 3 6 3.3604 - 3.1626 1.00 3470 158 0.1700 0.2054 REMARK 3 7 3.1626 - 3.0045 1.00 3376 183 0.1630 0.1859 REMARK 3 8 3.0045 - 2.8739 0.99 3350 165 0.1630 0.1970 REMARK 3 9 2.8739 - 2.7634 0.99 3394 140 0.1693 0.1658 REMARK 3 10 2.7634 - 2.6681 0.99 3335 190 0.1632 0.1928 REMARK 3 11 2.6681 - 2.5848 0.98 3302 171 0.1539 0.1816 REMARK 3 12 2.5848 - 2.5110 0.98 3285 173 0.1531 0.1820 REMARK 3 13 2.5110 - 2.4449 0.98 3302 174 0.1507 0.1857 REMARK 3 14 2.4449 - 2.3853 0.97 3269 185 0.1616 0.2074 REMARK 3 15 2.3853 - 2.3311 0.96 3250 157 0.1527 0.1914 REMARK 3 16 2.3311 - 2.2815 0.91 3047 167 0.1710 0.2045 REMARK 3 17 2.2815 - 2.2359 0.99 3282 203 0.1955 0.2272 REMARK 3 18 2.2359 - 2.1938 0.92 3068 177 0.1816 0.2140 REMARK 3 19 2.1938 - 2.1546 0.93 3124 190 0.1722 0.2255 REMARK 3 20 2.1546 - 2.1181 0.95 3141 194 0.1621 0.2340 REMARK 3 21 2.1181 - 2.0839 0.95 3146 183 0.1738 0.1956 REMARK 3 22 2.0839 - 2.0519 0.95 3205 164 0.1742 0.2094 REMARK 3 23 2.0519 - 2.0217 0.95 3161 155 0.1710 0.1930 REMARK 3 24 2.0217 - 1.9933 0.90 3034 160 0.1740 0.2076 REMARK 3 25 1.9933 - 1.9663 0.88 2920 140 0.1910 0.2106 REMARK 3 26 1.9663 - 1.9408 0.83 2805 144 0.2079 0.2345 REMARK 3 27 1.9408 - 1.9166 0.93 3082 154 0.2363 0.2525 REMARK 3 28 1.9166 - 1.8935 0.85 2899 155 0.2523 0.2966 REMARK 3 29 1.8935 - 1.8715 0.69 2260 117 0.2797 0.3264 REMARK 3 30 1.8715 - 1.8504 0.64 2167 122 0.2724 0.3178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 39.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63140 REMARK 3 B22 (A**2) : 6.06570 REMARK 3 B33 (A**2) : -7.69710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7419 REMARK 3 ANGLE : 1.041 10150 REMARK 3 CHIRALITY : 0.242 1144 REMARK 3 PLANARITY : 0.005 1333 REMARK 3 DIHEDRAL : 11.320 2658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -3.2102 34.1024 -32.7839 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.1597 REMARK 3 T33: 0.1571 T12: 0.0190 REMARK 3 T13: -0.0253 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.0784 L22: 0.7703 REMARK 3 L33: 1.9313 L12: 0.0855 REMARK 3 L13: 0.0465 L23: -0.4643 REMARK 3 S TENSOR REMARK 3 S11: 0.2273 S12: 0.0960 S13: -0.0236 REMARK 3 S21: -0.0716 S22: -0.0476 S23: 0.0283 REMARK 3 S31: 0.1026 S32: -0.2071 S33: -0.1673 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 5.9695 31.1466 -11.5369 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.2357 REMARK 3 T33: 0.1236 T12: -0.0728 REMARK 3 T13: -0.0420 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.6516 L22: 0.7450 REMARK 3 L33: 2.3167 L12: 0.0699 REMARK 3 L13: 0.2763 L23: -0.5673 REMARK 3 S TENSOR REMARK 3 S11: 0.2641 S12: -0.4560 S13: -0.0906 REMARK 3 S21: 0.2228 S22: -0.1012 S23: -0.0054 REMARK 3 S31: -0.0493 S32: 0.2570 S33: -0.1331 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 36.1193 33.3754 -56.0259 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1292 REMARK 3 T33: 0.1576 T12: 0.0063 REMARK 3 T13: 0.0316 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1883 L22: 0.7926 REMARK 3 L33: 1.9894 L12: -0.1915 REMARK 3 L13: -0.8118 L23: -0.3213 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: -0.1925 S13: 0.0289 REMARK 3 S21: 0.1169 S22: 0.0573 S23: 0.0662 REMARK 3 S31: -0.1945 S32: -0.0184 S33: -0.1563 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ONY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111. ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105679 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID: 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.66M AMMONIUM CITRATE PH 6.5, 1.65% REMARK 280 ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.90050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 133.90050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.26450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.95250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.26450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.95250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 133.90050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.26450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.95250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 133.90050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.26450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.95250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.52900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -133.90050 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 107 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 221 REMARK 465 PRO A 222 REMARK 465 GLY A 223 REMARK 465 GLN A 295 REMARK 465 ASP A 296 REMARK 465 GLU A 297 REMARK 465 HIS A 298 REMARK 465 ARG A 299 REMARK 465 GLY B 221 REMARK 465 PRO B 222 REMARK 465 GLY B 223 REMARK 465 SER B 224 REMARK 465 GLN B 295 REMARK 465 ASP B 296 REMARK 465 GLU B 297 REMARK 465 HIS B 298 REMARK 465 ARG B 299 REMARK 465 GLY C 221 REMARK 465 PRO C 222 REMARK 465 GLY C 223 REMARK 465 SER C 224 REMARK 465 GLN C 295 REMARK 465 ASP C 296 REMARK 465 GLU C 297 REMARK 465 HIS C 298 REMARK 465 ARG C 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 661 O HOH B 697 1.83 REMARK 500 O HOH B 565 O HOH B 566 1.90 REMARK 500 O HOH A 668 O HOH B 567 1.93 REMARK 500 O HOH C 642 O HOH C 645 2.05 REMARK 500 O HOH C 639 O HOH C 707 2.08 REMARK 500 O HOH A 657 O HOH A 672 2.11 REMARK 500 O HOH C 649 O HOH C 673 2.13 REMARK 500 O HOH C 679 O HOH C 708 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 697 O HOH C 697 3654 1.84 REMARK 500 O HOH C 658 O HOH C 662 3654 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 75.53 -151.70 REMARK 500 GLN A 260 47.77 -148.67 REMARK 500 ALA A 323 171.26 179.98 REMARK 500 GLN A 384 -23.14 -157.89 REMARK 500 VAL A 397 -40.63 -130.51 REMARK 500 VAL A 529 -143.12 -117.07 REMARK 500 ASN B 252 69.40 -150.29 REMARK 500 GLN B 260 45.28 -151.29 REMARK 500 PRO B 317 -9.18 -55.57 REMARK 500 GLN B 384 -27.10 -153.77 REMARK 500 ASP B 526 -67.08 -96.46 REMARK 500 ASN C 252 73.03 -154.10 REMARK 500 GLN C 260 44.13 -149.18 REMARK 500 GLN C 384 -20.47 -152.70 REMARK 500 ASP C 526 -60.04 -104.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ONU RELATED DB: PDB DBREF 3ONY A 225 538 UNP Q5F4T5 Q5F4T5_9CALI 225 538 DBREF 3ONY B 225 538 UNP Q5F4T5 Q5F4T5_9CALI 225 538 DBREF 3ONY C 225 538 UNP Q5F4T5 Q5F4T5_9CALI 225 538 SEQADV 3ONY GLY A 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY PRO A 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY GLY A 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY SER A 224 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY GLY B 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY PRO B 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY GLY B 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY SER B 224 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY GLY C 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY PRO C 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY GLY C 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONY SER C 224 UNP Q5F4T5 EXPRESSION TAG SEQRES 1 A 318 GLY PRO GLY SER LYS PRO PHE THR LEU PRO ILE LEU THR SEQRES 2 A 318 LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO ILE SEQRES 3 A 318 ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE VAL SEQRES 4 A 318 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 A 318 GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS ALA SEQRES 6 A 318 PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU HIS SEQRES 7 A 318 ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU ASN SEQRES 8 A 318 GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA PRO SEQRES 9 A 318 LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY VAL SEQRES 10 A 318 ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU GLY SEQRES 11 A 318 ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA SEQRES 12 A 318 THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN ILE SEQRES 13 A 318 GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER GLY SEQRES 14 A 318 GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER VAL SEQRES 15 A 318 ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SER SEQRES 16 A 318 TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA PRO SEQRES 17 A 318 SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE SEQRES 18 A 318 PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN SEQRES 19 A 318 PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL GLN SEQRES 20 A 318 HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP VAL SEQRES 21 A 318 ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG THR SEQRES 22 A 318 LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU THR SEQRES 23 A 318 VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO THR SEQRES 24 A 318 ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN PHE SEQRES 25 A 318 TYR THR LEU ALA PRO MET SEQRES 1 B 318 GLY PRO GLY SER LYS PRO PHE THR LEU PRO ILE LEU THR SEQRES 2 B 318 LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO ILE SEQRES 3 B 318 ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE VAL SEQRES 4 B 318 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 B 318 GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS ALA SEQRES 6 B 318 PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU HIS SEQRES 7 B 318 ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU ASN SEQRES 8 B 318 GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA PRO SEQRES 9 B 318 LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY VAL SEQRES 10 B 318 ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU GLY SEQRES 11 B 318 ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA SEQRES 12 B 318 THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN ILE SEQRES 13 B 318 GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER GLY SEQRES 14 B 318 GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER VAL SEQRES 15 B 318 ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SER SEQRES 16 B 318 TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA PRO SEQRES 17 B 318 SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE SEQRES 18 B 318 PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN SEQRES 19 B 318 PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL GLN SEQRES 20 B 318 HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP VAL SEQRES 21 B 318 ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG THR SEQRES 22 B 318 LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU THR SEQRES 23 B 318 VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO THR SEQRES 24 B 318 ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN PHE SEQRES 25 B 318 TYR THR LEU ALA PRO MET SEQRES 1 C 318 GLY PRO GLY SER LYS PRO PHE THR LEU PRO ILE LEU THR SEQRES 2 C 318 LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO ILE SEQRES 3 C 318 ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE VAL SEQRES 4 C 318 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 C 318 GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS ALA SEQRES 6 C 318 PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU HIS SEQRES 7 C 318 ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU ASN SEQRES 8 C 318 GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA PRO SEQRES 9 C 318 LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY VAL SEQRES 10 C 318 ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU GLY SEQRES 11 C 318 ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA SEQRES 12 C 318 THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN ILE SEQRES 13 C 318 GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER GLY SEQRES 14 C 318 GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER VAL SEQRES 15 C 318 ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SER SEQRES 16 C 318 TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA PRO SEQRES 17 C 318 SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE SEQRES 18 C 318 PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN SEQRES 19 C 318 PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL GLN SEQRES 20 C 318 HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP VAL SEQRES 21 C 318 ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG THR SEQRES 22 C 318 LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU THR SEQRES 23 C 318 VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO THR SEQRES 24 C 318 ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN PHE SEQRES 25 C 318 TYR THR LEU ALA PRO MET HET EDO A 3 10 HET EDO A 6 10 HET EDO A 10 10 HET FUC A 1 11 HET EDO B 4 10 HET EDO B 5 10 HET EDO B 7 10 HET EDO B 9 10 HET FUC B 2 11 HET EDO C 1 10 HET EDO C 2 10 HET EDO C 8 10 HET FUC C 3 11 HETNAM EDO 1,2-ETHANEDIOL HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 10(C2 H6 O2) FORMUL 7 FUC 3(C6 H12 O5) FORMUL 17 HOH *727(H2 O) HELIX 1 1 THR A 233 LEU A 237 5 5 HELIX 2 2 LEU A 279 ILE A 283 5 5 HELIX 3 3 VAL A 346 GLY A 350 5 5 HELIX 4 4 THR A 370 LEU A 373 5 4 HELIX 5 5 ASP A 403 HIS A 407 5 5 HELIX 6 6 PRO A 462 SER A 473 1 12 HELIX 7 7 THR B 233 LEU B 237 5 5 HELIX 8 8 LEU B 279 ILE B 283 5 5 HELIX 9 9 THR B 370 LEU B 373 5 4 HELIX 10 10 ASP B 403 HIS B 407 5 5 HELIX 11 11 PRO B 462 SER B 473 1 12 HELIX 12 12 THR C 233 LEU C 237 5 5 HELIX 13 13 LEU C 279 ILE C 283 5 5 HELIX 14 14 VAL C 346 GLY C 350 5 5 HELIX 15 15 THR C 370 LEU C 373 5 4 HELIX 16 16 ASP C 403 HIS C 407 5 5 HELIX 17 17 PRO C 462 SER C 473 1 12 SHEET 1 A 4 ALA A 456 CYS A 459 0 SHEET 2 A 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 A 4 VAL A 248 THR A 251 -1 N VAL A 248 O ARG A 443 SHEET 4 A 4 GLY A 513 PRO A 514 -1 O GLY A 513 N THR A 251 SHEET 1 B 6 ALA A 456 CYS A 459 0 SHEET 2 B 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 B 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 B 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 B 6 VAL A 480 VAL A 486 -1 N ALA A 481 O LEU A 499 SHEET 6 B 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 C 8 GLY B 450 TYR B 452 0 SHEET 2 C 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 C 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 C 8 THR A 301 VAL A 307 -1 N MET A 305 O ILE A 376 SHEET 5 C 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 C 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 C 8 GLN A 333 ARG A 341 -1 N VAL A 337 O THR A 395 SHEET 8 C 8 ALA A 354 ALA A 363 -1 O HIS A 358 N ILE A 338 SHEET 1 D 8 GLY A 450 TYR A 452 0 SHEET 2 D 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 D 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 D 8 THR B 301 THR B 308 -1 N MET B 305 O ILE B 376 SHEET 5 D 8 PHE B 286 VAL B 294 -1 N LYS B 289 O THR B 306 SHEET 6 D 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 D 8 GLN B 333 ARG B 341 -1 N TYR B 335 O VAL B 397 SHEET 8 D 8 ALA B 354 ALA B 363 -1 O ALA B 360 N GLY B 336 SHEET 1 E 4 ALA B 456 CYS B 459 0 SHEET 2 E 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 E 4 VAL B 248 THR B 251 -1 N VAL B 248 O ARG B 443 SHEET 4 E 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 F 6 ALA B 456 CYS B 459 0 SHEET 2 F 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 F 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 F 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 F 6 VAL B 480 VAL B 486 -1 N ALA B 481 O LEU B 499 SHEET 6 F 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 SHEET 1 G 4 ALA C 456 CYS C 459 0 SHEET 2 G 4 GLU C 437 PHE C 445 -1 N PHE C 442 O CYS C 459 SHEET 3 G 4 VAL C 248 THR C 251 -1 N VAL C 248 O ARG C 443 SHEET 4 G 4 GLY C 513 PRO C 514 -1 O GLY C 513 N THR C 251 SHEET 1 H 6 ALA C 456 CYS C 459 0 SHEET 2 H 6 GLU C 437 PHE C 445 -1 N PHE C 442 O CYS C 459 SHEET 3 H 6 PHE C 504 ALA C 508 -1 O VAL C 507 N CYS C 438 SHEET 4 H 6 THR C 493 HIS C 500 -1 N HIS C 500 O PHE C 504 SHEET 5 H 6 VAL C 480 VAL C 486 -1 N ALA C 481 O LEU C 499 SHEET 6 H 6 TYR C 522 VAL C 529 -1 O SER C 527 N LEU C 482 SHEET 1 I 7 PHE C 286 VAL C 294 0 SHEET 2 I 7 THR C 301 VAL C 307 -1 O ASN C 304 N THR C 291 SHEET 3 I 7 ASN C 375 THR C 380 -1 O ILE C 376 N MET C 305 SHEET 4 I 7 ASN C 355 ALA C 363 -1 N VAL C 361 O SER C 379 SHEET 5 I 7 GLN C 333 ARG C 341 -1 N ILE C 334 O ILE C 362 SHEET 6 I 7 PRO C 391 LEU C 399 -1 O VAL C 397 N TYR C 335 SHEET 7 I 7 PHE C 286 VAL C 294 -1 N GLY C 288 O THR C 392 CRYST1 80.529 115.905 267.801 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012418 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003734 0.00000