HEADER PROTEIN BINDING 25-JUN-10 3NOB TITLE STRUCTURE OF K11-LINKED DI-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS UBIQUITIN LYSINE-11, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.C.DONG,M.L.MATSUMOTO,S.G.HYMOWITZ REVDAT 3 02-APR-14 3NOB 1 SOURCE VERSN REVDAT 2 25-AUG-10 3NOB 1 JRNL REVDAT 1 11-AUG-10 3NOB 0 JRNL AUTH M.L.MATSUMOTO,K.E.WICKLIFFE,K.C.DONG,C.YU,I.BOSANAC, JRNL AUTH 2 D.BUSTOS,L.PHU,D.S.KIRKPATRICK,S.G.HYMOWITZ,M.RAPE, JRNL AUTH 3 R.F.KELLEY,V.M.DIXIT JRNL TITL K11-LINKED POLYUBIQUITINATION IN CELL CYCLE CONTROL REVEALED JRNL TITL 2 BY A K11 LINKAGE-SPECIFIC ANTIBODY. JRNL REF MOL.CELL V. 39 477 2010 JRNL REFN ISSN 1097-2765 JRNL PMID 20655260 JRNL DOI 10.1016/J.MOLCEL.2010.07.001 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 29142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2315 - 4.8626 1.00 2575 173 0.2239 0.2305 REMARK 3 2 4.8626 - 3.8624 1.00 2554 142 0.1954 0.2412 REMARK 3 3 3.8624 - 3.3750 1.00 2524 151 0.2220 0.2582 REMARK 3 4 3.3750 - 3.0668 1.00 2522 129 0.2574 0.3312 REMARK 3 5 3.0668 - 2.8472 1.00 2556 110 0.2861 0.3007 REMARK 3 6 2.8472 - 2.6794 1.00 2527 115 0.2757 0.3583 REMARK 3 7 2.6794 - 2.5453 1.00 2492 138 0.2753 0.3255 REMARK 3 8 2.5453 - 2.4346 1.00 2492 151 0.2844 0.3659 REMARK 3 9 2.4346 - 2.3409 1.00 2522 122 0.2895 0.3576 REMARK 3 10 2.3409 - 2.2602 1.00 2527 138 0.3213 0.3510 REMARK 3 11 2.2602 - 2.1900 0.93 2370 112 0.3773 0.3979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.07 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.20240 REMARK 3 B22 (A**2) : 3.29760 REMARK 3 B33 (A**2) : 2.90480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04210 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4886 REMARK 3 ANGLE : 0.932 6579 REMARK 3 CHIRALITY : 0.049 781 REMARK 3 PLANARITY : 0.003 838 REMARK 3 DIHEDRAL : 11.527 1907 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB060077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MG/ML PROTEIN IN 50 MM TRIS 7.5 AND REMARK 280 75 MM NACL WERE GROWN IN 0.2 M AMMONIUM SULFATE, 20% PEG3350. REMARK 280 SEEDS FROM THIS WERE FURTHER MICROSEEDED INTO 0.17 M AMMONIUM REMARK 280 SULFATE, 15% GLYCEROL, 20% PEG 2000 MME, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.79850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.02950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.79850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.02950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 76 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 SER C -1 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 465 SER D -1 REMARK 465 GLY D 75 REMARK 465 GLY D 76 REMARK 465 SER E -1 REMARK 465 GLY E 75 REMARK 465 GLY E 76 REMARK 465 SER F -1 REMARK 465 HIS F 0 REMARK 465 SER G -1 REMARK 465 HIS G 0 REMARK 465 GLY G 76 REMARK 465 SER H -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 74 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG E 74 CG CD NE CZ NH1 NH2 REMARK 470 HIS H 0 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 72 O HOH C 161 1.82 REMARK 500 O HOH B 105 O HOH B 147 1.90 REMARK 500 OG1 THR F 7 O HOH F 130 1.93 REMARK 500 O THR A 9 O HOH A 166 2.00 REMARK 500 O4 SO4 A 77 O HOH A 132 2.01 REMARK 500 OE2 GLU D 16 O HOH D 79 2.09 REMARK 500 O GLU C 64 O HOH C 80 2.15 REMARK 500 O LEU C 50 O HOH C 84 2.16 REMARK 500 O PRO G 38 O HOH G 145 2.17 REMARK 500 O3 SO4 B 77 O HOH B 86 2.17 REMARK 500 NE2 GLN C 49 O HOH C 161 2.18 REMARK 500 OE2 GLU E 16 O HOH E 126 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS E 11 CE LYS E 11 NZ -0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY E 10 N - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 GLY F 75 N - CA - C ANGL. DEV. = 22.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 78 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 78 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 77 DBREF 3NOB A 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 3NOB B 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 3NOB C 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 3NOB D 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 3NOB E 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 3NOB F 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 3NOB G 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 3NOB H 1 76 UNP P62988 UBIQ_HUMAN 1 76 SEQADV 3NOB SER A -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS A 0 UNP P62988 EXPRESSION TAG SEQADV 3NOB SER B -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS B 0 UNP P62988 EXPRESSION TAG SEQADV 3NOB SER C -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS C 0 UNP P62988 EXPRESSION TAG SEQADV 3NOB SER D -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS D 0 UNP P62988 EXPRESSION TAG SEQADV 3NOB SER E -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS E 0 UNP P62988 EXPRESSION TAG SEQADV 3NOB SER F -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS F 0 UNP P62988 EXPRESSION TAG SEQADV 3NOB SER G -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS G 0 UNP P62988 EXPRESSION TAG SEQADV 3NOB SER H -1 UNP P62988 EXPRESSION TAG SEQADV 3NOB HIS H 0 UNP P62988 EXPRESSION TAG SEQRES 1 A 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 A 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 A 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 A 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 A 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 A 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 B 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 B 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 B 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 B 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 B 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 C 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 C 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 C 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 C 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 C 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 D 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 D 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 D 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 D 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 D 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 D 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 E 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 E 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 E 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 E 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 E 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 E 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 F 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 F 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 F 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 F 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 F 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 F 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 G 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 G 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 G 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 G 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 G 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 G 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 H 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 H 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 H 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 H 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 H 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 H 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET SO4 A 77 5 HET SO4 A 78 5 HET SO4 B 77 5 HET SO4 B 78 5 HET SO4 D 77 5 HET SO4 E 77 5 HET SO4 H 77 5 HETNAM SO4 SULFATE ION FORMUL 9 SO4 7(O4 S 2-) FORMUL 16 HOH *164(H2 O) HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 LEU A 56 ASN A 60 5 5 HELIX 4 4 THR B 22 GLY B 35 1 14 HELIX 5 5 PRO B 37 ASP B 39 5 3 HELIX 6 6 THR C 22 GLY C 35 1 14 HELIX 7 7 PRO C 37 ASP C 39 5 3 HELIX 8 8 THR D 22 GLY D 35 1 14 HELIX 9 9 PRO D 37 ASP D 39 5 3 HELIX 10 10 THR E 22 GLY E 35 1 14 HELIX 11 11 PRO E 37 ASP E 39 5 3 HELIX 12 12 LEU E 56 ASN E 60 5 5 HELIX 13 13 THR F 22 GLY F 35 1 14 HELIX 14 14 PRO F 37 ASP F 39 5 3 HELIX 15 15 THR G 22 GLY G 35 1 14 HELIX 16 16 PRO G 37 ASP G 39 5 3 HELIX 17 17 THR H 22 GLY H 35 1 14 HELIX 18 18 PRO H 37 ASP H 39 5 3 SHEET 1 A 5 THR A 12 VAL A 17 0 SHEET 2 A 5 MET A 1 LYS A 6 -1 N MET A 1 O VAL A 17 SHEET 3 A 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 B 5 THR B 12 GLU B 16 0 SHEET 2 B 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 B 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 B 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 B 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 C 5 THR C 12 VAL C 17 0 SHEET 2 C 5 MET C 1 LYS C 6 -1 N MET C 1 O VAL C 17 SHEET 3 C 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 C 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 C 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 D 4 THR D 12 VAL D 17 0 SHEET 2 D 4 MET D 1 LYS D 6 -1 N MET D 1 O VAL D 17 SHEET 3 D 4 THR D 66 LEU D 71 1 O LEU D 67 N LYS D 6 SHEET 4 D 4 GLN D 41 ILE D 44 -1 N ILE D 44 O HIS D 68 SHEET 1 E 5 THR E 12 VAL E 17 0 SHEET 2 E 5 MET E 1 LYS E 6 -1 N VAL E 5 O ILE E 13 SHEET 3 E 5 THR E 66 LEU E 71 1 O LEU E 67 N PHE E 4 SHEET 4 E 5 GLN E 41 PHE E 45 -1 N ILE E 44 O HIS E 68 SHEET 5 E 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 SHEET 1 F 5 THR F 12 GLU F 16 0 SHEET 2 F 5 GLN F 2 LYS F 6 -1 N ILE F 3 O LEU F 15 SHEET 3 F 5 THR F 66 LEU F 71 1 O LEU F 67 N PHE F 4 SHEET 4 F 5 GLN F 41 PHE F 45 -1 N ARG F 42 O VAL F 70 SHEET 5 F 5 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 SHEET 1 G 5 THR G 12 GLU G 16 0 SHEET 2 G 5 GLN G 2 LYS G 6 -1 N VAL G 5 O ILE G 13 SHEET 3 G 5 THR G 66 LEU G 71 1 O LEU G 67 N PHE G 4 SHEET 4 G 5 GLN G 41 PHE G 45 -1 N ILE G 44 O HIS G 68 SHEET 5 G 5 LYS G 48 GLN G 49 -1 O LYS G 48 N PHE G 45 SHEET 1 H 5 THR H 12 VAL H 17 0 SHEET 2 H 5 MET H 1 LYS H 6 -1 N ILE H 3 O LEU H 15 SHEET 3 H 5 THR H 66 LEU H 71 1 O LEU H 67 N LYS H 6 SHEET 4 H 5 GLN H 41 PHE H 45 -1 N ILE H 44 O HIS H 68 SHEET 5 H 5 LYS H 48 GLN H 49 -1 O LYS H 48 N PHE H 45 LINK NZ LYS G 11 C GLY H 76 1555 1555 1.36 LINK NZ LYS E 11 C GLY F 76 1555 1555 1.38 SITE 1 AC1 9 ASP A 39 GLN A 40 ARG A 74 HOH A 132 SITE 2 AC1 9 GLY B 35 GLY E 35 ASP F 39 GLN F 40 SITE 3 AC1 9 ARG F 74 SITE 1 AC2 6 ILE A 44 PHE A 45 ALA A 46 GLY A 47 SITE 2 AC2 6 HIS A 68 HIS C 68 SITE 1 AC3 10 GLY A 35 ASP B 39 GLN B 40 ARG B 74 SITE 2 AC3 10 HOH B 86 HOH B 88 HOH B 107 ASP E 39 SITE 3 AC3 10 GLN E 40 GLY F 35 SITE 1 AC4 3 LYS B 63 LYS D 6 HIS D 68 SITE 1 AC5 3 LYS D 27 GLU D 51 ASP D 52 SITE 1 AC6 4 GLY A 53 THR E 14 LEU E 15 GLU E 16 SITE 1 AC7 5 LYS H 27 GLN H 41 ARG H 42 GLN H 49 SITE 2 AC7 5 ARG H 72 CRYST1 155.597 56.059 65.772 90.00 95.21 90.00 C 1 2 1 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006427 0.000000 0.000586 0.00000 SCALE2 0.000000 0.017838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015267 0.00000