HEADER OXIDOREDUCTASE 24-MAR-10 3MAP TITLE CRYSTAL STRUCTURE OF HOMODIMERIC R132H MUTANT OF HUMAN CYTOSOLIC TITLE 2 NADP(+)-DEPENDENT ISOCITRATE DEHYDROGENASE IN COMPLEX WITH NADP AND TITLE 3 ISOCITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IDH, CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE, OXALOSUCCINATE COMPND 5 DECARBOXYLASE, NADP(+)-SPECIFIC ICDH, IDP; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDH1, PICD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET KEYWDS ISOCITRATE DEHYDROGENASE, NICOTINAMIDE ADENINE DINUCLEOTIDE KEYWDS 2 PHOSPHATE, ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.YANG,Y.PENG,J.DING REVDAT 4 10-NOV-21 3MAP 1 REMARK SEQADV REVDAT 3 08-NOV-17 3MAP 1 REMARK REVDAT 2 21-MAY-14 3MAP 1 JRNL VERSN REVDAT 1 10-NOV-10 3MAP 0 JRNL AUTH B.YANG,C.ZHONG,Y.PENG,Z.LAI,J.DING JRNL TITL MOLECULAR MECHANISMS OF "OFF-ON SWITCH" OF ACTIVITIES OF JRNL TITL 2 HUMAN IDH1 BY TUMOR-ASSOCIATED MUTATION R132H. JRNL REF CELL RES. V. 20 1188 2010 JRNL REFN ISSN 1001-0602 JRNL PMID 20975740 JRNL DOI 10.1038/CR.2010.145 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 23449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9220 - 5.5960 0.98 3110 162 0.2370 0.2460 REMARK 3 2 5.5960 - 4.4430 0.98 2915 142 0.1790 0.2370 REMARK 3 3 4.4430 - 3.8820 0.98 2862 144 0.1890 0.2540 REMARK 3 4 3.8820 - 3.5270 0.97 2826 131 0.2220 0.2700 REMARK 3 5 3.5270 - 3.2750 0.96 2751 168 0.2280 0.2810 REMARK 3 6 3.2750 - 3.0820 0.94 2629 171 0.2460 0.3090 REMARK 3 7 3.0820 - 2.9280 0.92 2633 127 0.2580 0.3040 REMARK 3 8 2.9280 - 2.8000 0.89 2540 138 0.2920 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 36.07 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.84900 REMARK 3 B22 (A**2) : 2.84900 REMARK 3 B33 (A**2) : -5.69800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6511 REMARK 3 ANGLE : 0.852 8793 REMARK 3 CHIRALITY : 0.064 963 REMARK 3 PLANARITY : 0.012 1109 REMARK 3 DIHEDRAL : 20.550 2491 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -2.4775 32.2996 14.6486 REMARK 3 T TENSOR REMARK 3 T11: 0.2744 T22: 0.3075 REMARK 3 T33: 0.2674 T12: 0.0541 REMARK 3 T13: -0.0342 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: -0.0257 L22: 0.7497 REMARK 3 L33: 0.5478 L12: -0.1055 REMARK 3 L13: -0.0288 L23: -0.3218 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.0108 S13: -0.0256 REMARK 3 S21: -0.0433 S22: -0.0659 S23: 0.0324 REMARK 3 S31: 0.0789 S32: 0.0899 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -8.7161 28.8667 -17.8259 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.3171 REMARK 3 T33: 0.3487 T12: -0.0127 REMARK 3 T13: 0.0136 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0515 L22: 0.6636 REMARK 3 L33: 0.6481 L12: 0.0698 REMARK 3 L13: 0.0252 L23: 0.5170 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.0259 S13: -0.0192 REMARK 3 S21: -0.0216 S22: -0.0494 S23: 0.1261 REMARK 3 S31: -0.0047 S32: -0.0015 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -5.9695 25.1745 -0.4219 REMARK 3 T TENSOR REMARK 3 T11: 0.4877 T22: 0.5652 REMARK 3 T33: 0.4802 T12: 0.0248 REMARK 3 T13: -0.0157 T23: -0.1033 REMARK 3 L TENSOR REMARK 3 L11: 0.0016 L22: -0.0193 REMARK 3 L33: 0.0125 L12: 0.0251 REMARK 3 L13: -0.0107 L23: 0.0264 REMARK 3 S TENSOR REMARK 3 S11: -0.2387 S12: 0.0118 S13: -0.1098 REMARK 3 S21: -0.0138 S22: -0.2282 S23: 0.1921 REMARK 3 S31: -0.0215 S32: 0.1929 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -5.0870 35.4022 -1.2218 REMARK 3 T TENSOR REMARK 3 T11: 1.3363 T22: 1.1968 REMARK 3 T33: 1.4381 T12: -0.0171 REMARK 3 T13: 0.2764 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.0066 L22: 0.0133 REMARK 3 L33: 0.0726 L12: -0.0012 REMARK 3 L13: -0.0412 L23: 0.0061 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.1025 S13: 0.0462 REMARK 3 S21: 0.0676 S22: 0.0010 S23: -0.0072 REMARK 3 S31: -0.0512 S32: -0.0503 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 2.0M (NH4)2SO4, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.97800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.91800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.91800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 221.96700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.91800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.91800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.98900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.91800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.91800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 221.96700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.91800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.91800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.98900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 147.97800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 135 REMARK 465 GLY A 136 REMARK 465 ASP A 137 REMARK 465 GLN A 138 REMARK 465 TYR A 139 REMARK 465 TYR A 272 REMARK 465 ASP A 273 REMARK 465 GLY A 274 REMARK 465 ASP A 275 REMARK 465 VAL A 276 REMARK 465 GLN A 277 REMARK 465 SER A 278 REMARK 465 ASP A 279 REMARK 465 SER A 280 REMARK 465 LEU A 414 REMARK 465 LEU A 415 REMARK 465 GLU A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 TYR B 135 REMARK 465 GLY B 136 REMARK 465 ASP B 137 REMARK 465 GLN B 138 REMARK 465 TYR B 139 REMARK 465 ASP B 273 REMARK 465 GLY B 274 REMARK 465 ASP B 275 REMARK 465 VAL B 276 REMARK 465 GLN B 277 REMARK 465 SER B 278 REMARK 465 ASP B 279 REMARK 465 SER B 280 REMARK 465 LEU B 414 REMARK 465 LEU B 415 REMARK 465 GLU B 416 REMARK 465 HIS B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 281 CG1 CG2 REMARK 470 GLN A 283 CG CD OE1 NE2 REMARK 470 TYR A 285 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 140 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 272 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 281 CG1 CG2 REMARK 470 GLN B 283 CG CD OE1 NE2 REMARK 470 TYR B 285 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 314 O3X NAP A 423 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -134.73 51.29 REMARK 500 PRO A 33 -9.75 -59.15 REMARK 500 ASP A 38 83.14 -68.59 REMARK 500 ASP A 54 1.17 59.42 REMARK 500 ASN A 68 -26.20 74.15 REMARK 500 GLN A 90 160.02 175.78 REMARK 500 HIS A 133 -88.15 -79.86 REMARK 500 VAL A 145 -93.94 -44.08 REMARK 500 VAL A 146 64.35 65.00 REMARK 500 PRO A 149 156.72 -49.88 REMARK 500 HIS A 170 140.14 176.66 REMARK 500 LYS A 212 53.51 -103.00 REMARK 500 LEU A 216 64.90 -105.31 REMARK 500 LYS A 217 -71.28 -46.79 REMARK 500 GLN A 234 -29.66 -171.13 REMARK 500 PHE A 239 -72.08 -73.35 REMARK 500 ALA A 241 50.26 -66.97 REMARK 500 GLN A 242 6.04 173.84 REMARK 500 LYS A 243 -5.46 67.26 REMARK 500 ALA A 282 -95.35 -70.96 REMARK 500 GLN A 283 171.40 62.55 REMARK 500 GLU B 17 -136.88 44.11 REMARK 500 ILE B 31 -60.57 -99.50 REMARK 500 HIS B 40 74.33 -100.73 REMARK 500 ASP B 54 16.56 54.59 REMARK 500 ASP B 79 -161.83 -113.35 REMARK 500 TRP B 124 94.61 -43.36 REMARK 500 VAL B 146 82.68 61.76 REMARK 500 PRO B 147 -78.69 -50.06 REMARK 500 LYS B 164 88.92 -161.49 REMARK 500 HIS B 170 139.74 -171.97 REMARK 500 GLU B 173 -46.13 -130.48 REMARK 500 VAL B 178 128.06 -171.89 REMARK 500 ASN B 213 34.16 30.41 REMARK 500 THR B 214 -70.34 -153.68 REMARK 500 LEU B 216 52.52 -105.75 REMARK 500 LYS B 217 -92.53 -41.09 REMARK 500 LYS B 218 -53.47 -23.58 REMARK 500 PHE B 239 -75.86 -61.75 REMARK 500 ALA B 241 27.90 -71.00 REMARK 500 GLN B 242 22.30 -160.52 REMARK 500 LYS B 243 15.77 57.38 REMARK 500 TRP B 245 -174.91 -178.54 REMARK 500 ARG B 249 156.49 172.32 REMARK 500 LYS B 260 47.03 -85.16 REMARK 500 ASN B 271 -150.11 -124.95 REMARK 500 ALA B 282 34.19 81.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ICT A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ICT B 424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MAR RELATED DB: PDB REMARK 900 RELATED ID: 3MAS RELATED DB: PDB DBREF 3MAP A 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 3MAP B 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 3MAP HIS A 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 3MAP LEU A 415 UNP O75874 EXPRESSION TAG SEQADV 3MAP GLU A 416 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS A 417 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS A 418 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS A 419 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS A 420 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS A 421 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS A 422 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS B 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 3MAP LEU B 415 UNP O75874 EXPRESSION TAG SEQADV 3MAP GLU B 416 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS B 417 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS B 418 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS B 419 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS B 420 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS B 421 UNP O75874 EXPRESSION TAG SEQADV 3MAP HIS B 422 UNP O75874 EXPRESSION TAG SEQRES 1 A 422 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 A 422 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 A 422 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 A 422 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 A 422 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 A 422 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 422 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 A 422 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 A 422 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 A 422 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 A 422 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 A 422 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 A 422 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 A 422 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 A 422 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 A 422 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 A 422 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 A 422 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 A 422 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 A 422 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 A 422 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 A 422 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 A 422 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 A 422 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 A 422 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 A 422 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 A 422 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 A 422 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 A 422 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 A 422 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 A 422 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 A 422 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU LEU GLU SEQRES 33 A 422 HIS HIS HIS HIS HIS HIS SEQRES 1 B 422 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 B 422 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 B 422 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 B 422 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 B 422 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 B 422 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 422 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 B 422 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 B 422 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 B 422 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 B 422 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 B 422 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 B 422 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 B 422 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 B 422 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 B 422 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 B 422 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 B 422 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 B 422 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 B 422 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 B 422 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 B 422 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 B 422 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 B 422 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 B 422 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 B 422 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 B 422 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 B 422 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 B 422 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 B 422 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 B 422 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 B 422 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU LEU GLU SEQRES 33 B 422 HIS HIS HIS HIS HIS HIS HET NAP A 423 48 HET ICT A 424 13 HET NAP B 423 48 HET ICT B 424 13 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ICT ISOCITRIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 ICT 2(C6 H8 O7) HELIX 1 1 ASP A 16 LEU A 30 1 15 HELIX 2 2 GLY A 45 THR A 52 1 8 HELIX 3 3 ASP A 54 ASN A 68 1 15 HELIX 4 4 ASP A 79 LYS A 87 1 9 HELIX 5 5 SER A 94 GLY A 104 1 11 HELIX 6 6 ASP A 186 LYS A 203 1 18 HELIX 7 7 LEU A 216 LYS A 233 1 18 HELIX 8 8 TYR A 235 ALA A 241 1 7 HELIX 9 9 ILE A 251 SER A 261 1 11 HELIX 10 10 SER A 287 GLY A 289 5 3 HELIX 11 11 VAL A 312 LYS A 321 1 10 HELIX 12 12 PRO A 329 ASN A 348 1 20 HELIX 13 13 ASN A 349 ALA A 369 1 21 HELIX 14 14 THR A 373 VAL A 386 1 14 HELIX 15 15 GLN A 387 TYR A 391 5 5 HELIX 16 16 ASN A 393 GLN A 411 1 19 HELIX 17 17 ASP B 16 LEU B 30 1 15 HELIX 18 18 GLY B 45 THR B 52 1 8 HELIX 19 19 ASP B 54 ASN B 68 1 15 HELIX 20 20 ASP B 79 PHE B 86 1 8 HELIX 21 21 SER B 94 GLY B 104 1 11 HELIX 22 22 ASP B 186 LYS B 203 1 18 HELIX 23 23 LEU B 216 TYR B 235 1 20 HELIX 24 24 TYR B 235 ALA B 241 1 7 HELIX 25 25 LEU B 250 LYS B 260 1 11 HELIX 26 26 SER B 287 GLY B 289 5 3 HELIX 27 27 VAL B 312 GLY B 322 1 11 HELIX 28 28 PRO B 329 ASN B 348 1 20 HELIX 29 29 ASN B 349 ALA B 369 1 21 HELIX 30 30 THR B 373 GLY B 382 1 10 HELIX 31 31 LEU B 383 VAL B 386 5 4 HELIX 32 32 GLN B 387 TYR B 391 5 5 HELIX 33 33 ASN B 393 ALA B 412 1 20 SHEET 1 A10 VAL A 35 ASP A 43 0 SHEET 2 A10 ILE A 5 GLN A 14 1 N GLY A 7 O GLU A 36 SHEET 3 A10 VAL A 69 LYS A 72 1 O VAL A 69 N VAL A 11 SHEET 4 A10 VAL A 303 ALA A 307 1 O ALA A 305 N LYS A 72 SHEET 5 A10 MET A 291 VAL A 296 -1 N LEU A 295 O GLU A 304 SHEET 6 A10 THR A 106 ALA A 111 -1 N GLU A 110 O THR A 292 SHEET 7 A10 LYS A 126 GLY A 131 -1 O ILE A 130 N ARG A 109 SHEET 8 A10 GLY A 263 ALA A 268 1 O TRP A 267 N ILE A 129 SHEET 9 A10 LEU A 207 THR A 211 1 N TYR A 208 O ALA A 268 SHEET 10 A10 HIS A 248 LEU A 250 1 O ARG A 249 N LEU A 209 SHEET 1 B 4 THR A 142 PHE A 144 0 SHEET 2 B 4 GLY A 177 GLN A 185 -1 O GLY A 181 N THR A 142 SHEET 3 B 4 GLY B 177 GLN B 185 -1 O MET B 180 N MET A 182 SHEET 4 B 4 THR B 142 PHE B 144 -1 N PHE B 144 O ALA B 179 SHEET 1 C 4 VAL A 165 PHE A 172 0 SHEET 2 C 4 GLY A 150 PRO A 158 -1 N TYR A 156 O VAL A 165 SHEET 3 C 4 GLY B 150 PRO B 158 -1 O THR B 155 N GLU A 153 SHEET 4 C 4 VAL B 165 PHE B 172 -1 O VAL B 165 N TYR B 156 SHEET 1 D10 VAL B 35 ASP B 43 0 SHEET 2 D10 ILE B 5 GLN B 14 1 N GLY B 7 O GLU B 36 SHEET 3 D10 VAL B 69 LYS B 72 1 O VAL B 69 N VAL B 11 SHEET 4 D10 VAL B 303 ALA B 307 1 O ALA B 305 N LYS B 72 SHEET 5 D10 MET B 291 VAL B 296 -1 N SER B 293 O GLU B 306 SHEET 6 D10 THR B 106 ALA B 111 -1 N THR B 106 O VAL B 296 SHEET 7 D10 LYS B 126 HIS B 132 -1 O ILE B 130 N ARG B 109 SHEET 8 D10 GLY B 263 CYS B 269 1 O TRP B 267 N GLY B 131 SHEET 9 D10 LEU B 207 LEU B 209 1 N TYR B 208 O ALA B 268 SHEET 10 D10 TYR B 246 GLU B 247 1 O GLU B 247 N LEU B 207 SITE 1 AC1 20 LYS A 72 ALA A 74 THR A 75 ILE A 76 SITE 2 AC1 20 THR A 77 ARG A 82 ASN A 96 LEU A 288 SITE 3 AC1 20 GLY A 289 GLU A 306 HIS A 309 GLY A 310 SITE 4 AC1 20 THR A 311 VAL A 312 THR A 313 ARG A 314 SITE 5 AC1 20 HIS A 315 THR A 327 ASN A 328 ICT A 424 SITE 1 AC2 20 LYS A 260 LYS B 72 THR B 75 ILE B 76 SITE 2 AC2 20 THR B 77 ARG B 82 ASN B 96 LEU B 288 SITE 3 AC2 20 GLY B 289 GLU B 306 HIS B 309 GLY B 310 SITE 4 AC2 20 THR B 311 VAL B 312 THR B 313 ARG B 314 SITE 5 AC2 20 HIS B 315 THR B 327 ASN B 328 ICT B 424 SITE 1 AC3 5 THR A 77 SER A 94 ASN A 96 ARG A 100 SITE 2 AC3 5 NAP A 423 SITE 1 AC4 6 THR B 77 SER B 94 ASN B 96 GLY B 97 SITE 2 AC4 6 ARG B 100 NAP B 423 CRYST1 79.836 79.836 295.956 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003379 0.00000