HEADER HYDROLASE 10-NOV-09 3KM8 TITLE CRYSTAL STRUCTUORE OF ADENOSINE DEAMINASE FROM MUS MUSCULUS COMPLEXED TITLE 2 WITH 9-DEAZAINOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADENOSINE AMINOHYDROLASE; COMPND 5 EC: 3.5.4.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ADA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, CYCLICAMIDINES, METAL-BINDING, NUCLEOTIDE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR X.FAN,Y.GAO REVDAT 2 10-NOV-21 3KM8 1 REMARK SEQADV LINK REVDAT 1 20-OCT-10 3KM8 0 JRNL AUTH X.WU,X.FAN,Y.GAO,X.SU,H.ZHANG,Y.WU JRNL TITL THE CATALYTIC MECHANISM OF ADENOSINE DEAMINASE FROM MOUSE: JRNL TITL 2 AN EXPERIMENTAL AND THEORETICAL STUDY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 45618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.77000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5744 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7778 ; 1.675 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 696 ; 6.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;39.933 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1018 ;18.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.521 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 850 ; 0.194 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4342 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3480 ; 1.527 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5634 ; 2.469 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2264 ; 4.241 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2144 ; 6.377 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 84.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 9.530 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.28 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 1ADD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 2000 MME, 150MM MGCL2, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.16850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.80800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.16850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.80800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 47.02 -96.86 REMARK 500 ALA A 21 47.96 -143.58 REMARK 500 LYS A 111 54.08 39.74 REMARK 500 GLU A 121 124.30 -36.13 REMARK 500 LYS A 175 68.02 -152.19 REMARK 500 LYS A 232 33.01 71.06 REMARK 500 HIS A 238 -93.45 76.36 REMARK 500 ASN B 8 49.07 -85.12 REMARK 500 ALA B 21 46.62 -142.65 REMARK 500 HIS B 238 -95.09 73.25 REMARK 500 ASP B 295 -81.18 76.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 115.1 REMARK 620 3 HIS A 214 NE2 94.1 94.6 REMARK 620 4 ASP A 295 OD1 85.2 92.0 173.1 REMARK 620 5 HOH A 526 O 107.7 135.5 94.0 79.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 HIS B 17 NE2 113.3 REMARK 620 3 HIS B 214 NE2 94.0 98.2 REMARK 620 4 ASP B 295 OD1 84.7 87.3 174.4 REMARK 620 5 HOH B 366 O 116.9 124.5 100.4 75.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9DI A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9DI B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ADD RELATED DB: PDB DBREF 3KM8 A 1 352 UNP P03958 ADA_MOUSE 1 352 DBREF 3KM8 B 1 352 UNP P03958 ADA_MOUSE 1 352 SEQADV 3KM8 GLN A 217 UNP P03958 GLU 217 ENGINEERED MUTATION SEQADV 3KM8 GLU A 240 UNP P03958 TYR 240 ENGINEERED MUTATION SEQADV 3KM8 GLN B 217 UNP P03958 GLU 217 ENGINEERED MUTATION SEQADV 3KM8 GLU B 240 UNP P03958 TYR 240 ENGINEERED MUTATION SEQRES 1 A 352 MET ALA GLN THR PRO ALA PHE ASN LYS PRO LYS VAL GLU SEQRES 2 A 352 LEU HIS VAL HIS LEU ASP GLY ALA ILE LYS PRO GLU THR SEQRES 3 A 352 ILE LEU TYR PHE GLY LYS LYS ARG GLY ILE ALA LEU PRO SEQRES 4 A 352 ALA ASP THR VAL GLU GLU LEU ARG ASN ILE ILE GLY MET SEQRES 5 A 352 ASP LYS PRO LEU SER LEU PRO GLY PHE LEU ALA LYS PHE SEQRES 6 A 352 ASP TYR TYR MET PRO VAL ILE ALA GLY CYS ARG GLU ALA SEQRES 7 A 352 ILE LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA SEQRES 8 A 352 LYS GLU GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO SEQRES 9 A 352 HIS LEU LEU ALA ASN SER LYS VAL ASP PRO MET PRO TRP SEQRES 10 A 352 ASN GLN THR GLU GLY ASP VAL THR PRO ASP ASP VAL VAL SEQRES 11 A 352 ASP LEU VAL ASN GLN GLY LEU GLN GLU GLY GLU GLN ALA SEQRES 12 A 352 PHE GLY ILE LYS VAL ARG SER ILE LEU CYS CYS MET ARG SEQRES 13 A 352 HIS GLN PRO SER TRP SER LEU GLU VAL LEU GLU LEU CYS SEQRES 14 A 352 LYS LYS TYR ASN GLN LYS THR VAL VAL ALA MET ASP LEU SEQRES 15 A 352 ALA GLY ASP GLU THR ILE GLU GLY SER SER LEU PHE PRO SEQRES 16 A 352 GLY HIS VAL GLU ALA TYR GLU GLY ALA VAL LYS ASN GLY SEQRES 17 A 352 ILE HIS ARG THR VAL HIS ALA GLY GLN VAL GLY SER PRO SEQRES 18 A 352 GLU VAL VAL ARG GLU ALA VAL ASP ILE LEU LYS THR GLU SEQRES 19 A 352 ARG VAL GLY HIS GLY GLU HIS THR ILE GLU ASP GLU ALA SEQRES 20 A 352 LEU TYR ASN ARG LEU LEU LYS GLU ASN MET HIS PHE GLU SEQRES 21 A 352 VAL CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP ASP SEQRES 22 A 352 PRO LYS THR THR HIS ALA VAL VAL ARG PHE LYS ASN ASP SEQRES 23 A 352 LYS ALA ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE SEQRES 24 A 352 PHE LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS SEQRES 25 A 352 LYS ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU SEQRES 26 A 352 ASN ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU GLU SEQRES 27 A 352 GLU LYS LYS GLU LEU LEU GLU ARG LEU TYR ARG GLU TYR SEQRES 28 A 352 GLN SEQRES 1 B 352 MET ALA GLN THR PRO ALA PHE ASN LYS PRO LYS VAL GLU SEQRES 2 B 352 LEU HIS VAL HIS LEU ASP GLY ALA ILE LYS PRO GLU THR SEQRES 3 B 352 ILE LEU TYR PHE GLY LYS LYS ARG GLY ILE ALA LEU PRO SEQRES 4 B 352 ALA ASP THR VAL GLU GLU LEU ARG ASN ILE ILE GLY MET SEQRES 5 B 352 ASP LYS PRO LEU SER LEU PRO GLY PHE LEU ALA LYS PHE SEQRES 6 B 352 ASP TYR TYR MET PRO VAL ILE ALA GLY CYS ARG GLU ALA SEQRES 7 B 352 ILE LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA SEQRES 8 B 352 LYS GLU GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO SEQRES 9 B 352 HIS LEU LEU ALA ASN SER LYS VAL ASP PRO MET PRO TRP SEQRES 10 B 352 ASN GLN THR GLU GLY ASP VAL THR PRO ASP ASP VAL VAL SEQRES 11 B 352 ASP LEU VAL ASN GLN GLY LEU GLN GLU GLY GLU GLN ALA SEQRES 12 B 352 PHE GLY ILE LYS VAL ARG SER ILE LEU CYS CYS MET ARG SEQRES 13 B 352 HIS GLN PRO SER TRP SER LEU GLU VAL LEU GLU LEU CYS SEQRES 14 B 352 LYS LYS TYR ASN GLN LYS THR VAL VAL ALA MET ASP LEU SEQRES 15 B 352 ALA GLY ASP GLU THR ILE GLU GLY SER SER LEU PHE PRO SEQRES 16 B 352 GLY HIS VAL GLU ALA TYR GLU GLY ALA VAL LYS ASN GLY SEQRES 17 B 352 ILE HIS ARG THR VAL HIS ALA GLY GLN VAL GLY SER PRO SEQRES 18 B 352 GLU VAL VAL ARG GLU ALA VAL ASP ILE LEU LYS THR GLU SEQRES 19 B 352 ARG VAL GLY HIS GLY GLU HIS THR ILE GLU ASP GLU ALA SEQRES 20 B 352 LEU TYR ASN ARG LEU LEU LYS GLU ASN MET HIS PHE GLU SEQRES 21 B 352 VAL CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP ASP SEQRES 22 B 352 PRO LYS THR THR HIS ALA VAL VAL ARG PHE LYS ASN ASP SEQRES 23 B 352 LYS ALA ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE SEQRES 24 B 352 PHE LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS SEQRES 25 B 352 LYS ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU SEQRES 26 B 352 ASN ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU GLU SEQRES 27 B 352 GLU LYS LYS GLU LEU LEU GLU ARG LEU TYR ARG GLU TYR SEQRES 28 B 352 GLN HET 9DI A 353 19 HET ZN A 400 1 HET 9DI B 353 19 HET ZN B 400 1 HETNAM 9DI 9-DEAZAINOSINE HETNAM ZN ZINC ION FORMUL 3 9DI 2(C11 H13 N3 O5) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *356(H2 O) HELIX 1 1 ASP A 19 ALA A 21 5 3 HELIX 2 2 LYS A 23 GLY A 35 1 13 HELIX 3 3 THR A 42 GLY A 51 1 10 HELIX 4 4 SER A 57 ALA A 63 1 7 HELIX 5 5 LYS A 64 TYR A 67 5 4 HELIX 6 6 TYR A 68 ALA A 73 1 6 HELIX 7 7 CYS A 75 GLU A 93 1 19 HELIX 8 8 PRO A 104 ALA A 108 5 5 HELIX 9 9 MET A 115 GLN A 119 5 5 HELIX 10 10 THR A 125 GLY A 145 1 21 HELIX 11 11 GLN A 158 SER A 160 5 3 HELIX 12 12 TRP A 161 TYR A 172 1 12 HELIX 13 13 GLY A 190 LEU A 193 5 4 HELIX 14 14 PHE A 194 ASN A 207 1 14 HELIX 15 15 SER A 220 ILE A 230 1 11 HELIX 16 16 GLU A 240 ILE A 243 5 4 HELIX 17 17 ASP A 245 GLU A 255 1 11 HELIX 18 18 CYS A 262 THR A 269 1 8 HELIX 19 19 HIS A 278 ASP A 286 1 9 HELIX 20 20 THR A 303 GLY A 316 1 14 HELIX 21 21 THR A 318 SER A 332 1 15 HELIX 22 22 PRO A 336 GLN A 352 1 17 HELIX 23 23 ASP B 19 ALA B 21 5 3 HELIX 24 24 LYS B 23 GLY B 35 1 13 HELIX 25 25 THR B 42 GLY B 51 1 10 HELIX 26 26 SER B 57 ALA B 63 1 7 HELIX 27 27 LYS B 64 TYR B 67 5 4 HELIX 28 28 TYR B 68 ALA B 73 1 6 HELIX 29 29 CYS B 75 GLU B 93 1 19 HELIX 30 30 PRO B 104 ALA B 108 5 5 HELIX 31 31 MET B 115 GLN B 119 5 5 HELIX 32 32 THR B 125 GLY B 145 1 21 HELIX 33 33 GLN B 158 SER B 160 5 3 HELIX 34 34 TRP B 161 TYR B 172 1 12 HELIX 35 35 GLY B 190 LEU B 193 5 4 HELIX 36 36 PHE B 194 ASN B 207 1 14 HELIX 37 37 SER B 220 ILE B 230 1 11 HELIX 38 38 GLU B 240 GLU B 244 5 5 HELIX 39 39 ASP B 245 GLU B 255 1 11 HELIX 40 40 CYS B 262 THR B 269 1 8 HELIX 41 41 HIS B 278 ASP B 286 1 9 HELIX 42 42 THR B 303 GLY B 316 1 14 HELIX 43 43 THR B 318 SER B 332 1 15 HELIX 44 44 PRO B 336 GLN B 352 1 17 SHEET 1 A 8 LYS A 11 HIS A 17 0 SHEET 2 A 8 VAL A 95 TYR A 102 1 O ARG A 101 N VAL A 16 SHEET 3 A 8 LYS A 147 MET A 155 1 O CYS A 153 N TYR A 102 SHEET 4 A 8 VAL A 177 ALA A 183 1 O ALA A 183 N CYS A 154 SHEET 5 A 8 HIS A 210 ALA A 215 1 O HIS A 210 N MET A 180 SHEET 6 A 8 ARG A 235 HIS A 238 1 O GLY A 237 N VAL A 213 SHEET 7 A 8 HIS A 258 VAL A 261 1 O HIS A 258 N VAL A 236 SHEET 8 A 8 ASN A 289 LEU A 292 1 O ASN A 289 N PHE A 259 SHEET 1 B 8 LYS B 11 HIS B 17 0 SHEET 2 B 8 VAL B 95 TYR B 102 1 O ARG B 101 N VAL B 16 SHEET 3 B 8 LYS B 147 MET B 155 1 O CYS B 153 N TYR B 102 SHEET 4 B 8 VAL B 177 ALA B 183 1 O VAL B 178 N SER B 150 SHEET 5 B 8 HIS B 210 ALA B 215 1 O THR B 212 N MET B 180 SHEET 6 B 8 ARG B 235 HIS B 238 1 O GLY B 237 N VAL B 213 SHEET 7 B 8 HIS B 258 VAL B 261 1 O GLU B 260 N VAL B 236 SHEET 8 B 8 TYR B 290 LEU B 292 1 O SER B 291 N PHE B 259 LINK NE2 HIS A 15 ZN ZN A 400 1555 1555 2.13 LINK NE2 HIS A 17 ZN ZN A 400 1555 1555 2.08 LINK NE2 HIS A 214 ZN ZN A 400 1555 1555 2.17 LINK OD1 ASP A 295 ZN ZN A 400 1555 1555 2.54 LINK ZN ZN A 400 O HOH A 526 1555 1555 1.96 LINK NE2 HIS B 15 ZN ZN B 400 1555 1555 2.04 LINK NE2 HIS B 17 ZN ZN B 400 1555 1555 2.00 LINK NE2 HIS B 214 ZN ZN B 400 1555 1555 2.29 LINK OD1 ASP B 295 ZN ZN B 400 1555 1555 2.28 LINK O HOH B 366 ZN ZN B 400 1555 1555 1.95 CISPEP 1 ASP A 113 PRO A 114 0 -1.20 CISPEP 2 LYS A 175 THR A 176 0 8.09 CISPEP 3 ASP B 113 PRO B 114 0 -7.35 CISPEP 4 LYS B 175 THR B 176 0 5.74 SITE 1 AC1 17 HIS A 17 ASP A 19 PHE A 61 LEU A 62 SITE 2 AC1 17 PHE A 65 SER A 103 LEU A 106 MET A 155 SITE 3 AC1 17 ALA A 183 GLY A 184 HIS A 214 GLN A 217 SITE 4 AC1 17 ASP A 295 ASP A 296 HOH A 433 HOH A 440 SITE 5 AC1 17 HOH A 526 SITE 1 AC2 5 HIS A 15 HIS A 17 HIS A 214 ASP A 295 SITE 2 AC2 5 HOH A 526 SITE 1 AC3 16 HIS B 17 ASP B 19 PHE B 61 PHE B 65 SITE 2 AC3 16 TYR B 102 SER B 103 LEU B 106 MET B 155 SITE 3 AC3 16 ALA B 183 GLY B 184 GLN B 217 ASP B 295 SITE 4 AC3 16 ASP B 296 HOH B 366 HOH B 426 HOH B 453 SITE 1 AC4 5 HIS B 15 HIS B 17 HIS B 214 ASP B 295 SITE 2 AC4 5 HOH B 366 CRYST1 100.337 93.616 85.416 90.00 97.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009966 0.000000 0.001286 0.00000 SCALE2 0.000000 0.010682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011804 0.00000