HEADER LYASE 07-NOV-08 3F7B TITLE CRYSTAL STRUCTURE OF SOLUBLE DOMAIN OF CA4 IN COMPLEX WITH SMALL TITLE 2 MOLECULE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE DOMAIN; COMPND 5 SYNONYM: CARBONIC ANHYDRASE IV, CA-IV, CARBONATE DEHYDRATASE IV; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURE-BASED DRUG DESIGN. SMALL MOLECULE COMPLEX. CO-CRYSTAL., KEYWDS 2 CELL MEMBRANE, DISEASE MUTATION, GLYCOPROTEIN, GPI-ANCHOR, KEYWDS 3 LIPOPROTEIN, LYASE, MEMBRANE, METAL-BINDING, RETINITIS PIGMENTOSA, KEYWDS 4 SENSORY TRANSDUCTION, VISION, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR S.E.GREASLEY,R.A.A.FERRE,T.A.PAULY,R.PAZ REVDAT 2 12-MAY-10 3F7B 1 JRNL REVDAT 1 22-SEP-09 3F7B 0 JRNL AUTH W.VERNIER,W.CHONG,D.REWOLINSKI,S.GREASLEY,T.PAULY,M.SHAW, JRNL AUTH 2 D.DINH,R.A.FERRE,S.NUKUI,M.ORNELAS,E.REYNER JRNL TITL THIOETHER BENZENESULFONAMIDE INHIBITORS OF CARBONIC JRNL TITL 2 ANHYDRASES II AND IV: STRUCTURE-BASED DRUG DESIGN, JRNL TITL 3 SYNTHESIS, AND BIOLOGICAL EVALUATION. JRNL REF BIOORG.MED.CHEM. V. 18 3307 2010 JRNL REFN ISSN 0968-0896 JRNL PMID 20363633 JRNL DOI 10.1016/J.BMC.2010.03.014 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 39564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.69000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4156 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5620 ; 2.072 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 7.287 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;36.501 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 719 ;17.280 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;11.268 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3109 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2510 ; 1.371 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4050 ; 2.372 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 3.673 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 5.741 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F7B COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-08. REMARK 100 THE RCSB ID CODE IS RCSB050236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 19.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 2.560 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ZNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M NA ACETATE, 0.32M REMARK 280 AMMONIUM SULFATE , PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.95500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.27800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.95500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.27800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 491 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ARG A 129 REMARK 465 ASN A 130 REMARK 465 VAL A 131 REMARK 465 LYS A 132 REMARK 465 GLU A 133 REMARK 465 ALA A 134 REMARK 465 GLN A 135 REMARK 465 ASP A 136 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 SER B 11C REMARK 465 ASN B 11D REMARK 465 TYR B 11E REMARK 465 LYS B 125A REMARK 465 GLY B 125B REMARK 465 THR B 125C REMARK 465 SER B 125D REMARK 465 ARG B 125E REMARK 465 ASN B 125F REMARK 465 VAL B 125G REMARK 465 LYS B 125H REMARK 465 GLU B 125I REMARK 465 ALA B 125J REMARK 465 GLN B 125K REMARK 465 ASP B 125L REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 11D CG OD1 ND2 REMARK 470 TYR A 11E CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 42 CE NZ REMARK 470 LYS A 43 CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 SER A 128 OG REMARK 470 LYS A 187 CD CE NZ REMARK 470 GLU A 187B CD OE1 OE2 REMARK 470 ARG A 189A CD NE CZ NH1 NH2 REMARK 470 GLU A 221 CD OE1 OE2 REMARK 470 LYS B 42 CE NZ REMARK 470 LYS B 43 CE NZ REMARK 470 LYS B 53 CD CE NZ REMARK 470 GLU B 138 CD OE1 OE2 REMARK 470 LYS B 187 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 110 O HOH B 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 16 C GLY A 20 N 0.195 REMARK 500 ASN A 72 C LYS A 76 N 0.196 REMARK 500 GLU A 171 CG GLU A 171 CD 0.091 REMARK 500 TYR A 191 CE2 TYR A 191 CD2 0.092 REMARK 500 LYS A 233 C GLU A 236 N 0.139 REMARK 500 TRP B 16 C GLY B 20 N 0.159 REMARK 500 ASN B 72 C LYS B 76 N 0.192 REMARK 500 LYS B 233 C GLU B 236 N 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 16 CA - C - N ANGL. DEV. = 21.1 DEGREES REMARK 500 TRP A 16 O - C - N ANGL. DEV. = -20.8 DEGREES REMARK 500 GLY A 20 C - N - CA ANGL. DEV. = 22.5 DEGREES REMARK 500 LEU A 218 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LYS A 233 CA - C - N ANGL. DEV. = 24.9 DEGREES REMARK 500 LYS A 233 O - C - N ANGL. DEV. = -26.8 DEGREES REMARK 500 GLU A 236 C - N - CA ANGL. DEV. = 23.7 DEGREES REMARK 500 GLY B 20 C - N - CA ANGL. DEV. = -20.7 DEGREES REMARK 500 LYS B 233 O - C - N ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 98 -163.78 -124.36 REMARK 500 LYS B 25 -164.79 -78.22 REMARK 500 ARG B 27 50.71 -119.33 REMARK 500 SER B 65 -178.13 -171.74 REMARK 500 GLU B 171 -14.33 81.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 137 GLU A 138 -146.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 10 23.4 L L OUTSIDE RANGE REMARK 500 VAL A 245 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 555 DISTANCE = 5.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 111.7 REMARK 620 3 HIS A 119 ND1 116.1 99.3 REMARK 620 4 AG5 A 302 N9 101.7 112.7 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 94 NE2 REMARK 620 2 HIS B 96 NE2 103.0 REMARK 620 3 HIS B 119 ND1 111.9 98.5 REMARK 620 4 AG5 B 303 N9 109.5 110.7 121.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG5 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG5 B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F7U RELATED DB: PDB REMARK 900 SMALL MOLECULE FROM SAME CHEMICAL SERIES. REMARK 900 RELATED ID: 3FW3 RELATED DB: PDB DBREF 3F7B A 1 259 UNP P22748 CAH4_HUMAN 19 284 DBREF 3F7B B 1 259 UNP P22748 CAH4_HUMAN 19 284 SEQRES 1 A 266 ALA GLU SER HIS TRP CYS TYR GLU VAL GLN ALA GLU SER SEQRES 2 A 266 SER ASN TYR PRO CYS LEU VAL PRO VAL LYS TRP GLY GLY SEQRES 3 A 266 ASN CYS GLN LYS ASP ARG GLN SER PRO ILE ASN ILE VAL SEQRES 4 A 266 THR THR LYS ALA LYS VAL ASP LYS LYS LEU GLY ARG PHE SEQRES 5 A 266 PHE PHE SER GLY TYR ASP LYS LYS GLN THR TRP THR VAL SEQRES 6 A 266 GLN ASN ASN GLY HIS SER VAL MET MET LEU LEU GLU ASN SEQRES 7 A 266 LYS ALA SER ILE SER GLY GLY GLY LEU PRO ALA PRO TYR SEQRES 8 A 266 GLN ALA LYS GLN LEU HIS LEU HIS TRP SER ASP LEU PRO SEQRES 9 A 266 TYR LYS GLY SER GLU HIS SER LEU ASP GLY GLU HIS PHE SEQRES 10 A 266 ALA MET GLU MET HIS ILE VAL HIS GLU LYS GLU LYS GLY SEQRES 11 A 266 THR SER ARG ASN VAL LYS GLU ALA GLN ASP PRO GLU ASP SEQRES 12 A 266 GLU ILE ALA VAL LEU ALA PHE LEU VAL GLU ALA GLY THR SEQRES 13 A 266 GLN VAL ASN GLU GLY PHE GLN PRO LEU VAL GLU ALA LEU SEQRES 14 A 266 SER ASN ILE PRO LYS PRO GLU MET SER THR THR MET ALA SEQRES 15 A 266 GLU SER SER LEU LEU ASP LEU LEU PRO LYS GLU GLU LYS SEQRES 16 A 266 LEU ARG HIS TYR PHE ARG TYR LEU GLY SER LEU THR THR SEQRES 17 A 266 PRO THR CYS ASP GLU LYS VAL VAL TRP THR VAL PHE ARG SEQRES 18 A 266 GLU PRO ILE GLN LEU HIS ARG GLU GLN ILE LEU ALA PHE SEQRES 19 A 266 SER GLN LYS LEU TYR TYR ASP LYS GLU GLN THR VAL SER SEQRES 20 A 266 MET LYS ASP ASN VAL ARG PRO LEU GLN GLN LEU GLY GLN SEQRES 21 A 266 ARG THR VAL ILE LYS SER SEQRES 1 B 266 ALA GLU SER HIS TRP CYS TYR GLU VAL GLN ALA GLU SER SEQRES 2 B 266 SER ASN TYR PRO CYS LEU VAL PRO VAL LYS TRP GLY GLY SEQRES 3 B 266 ASN CYS GLN LYS ASP ARG GLN SER PRO ILE ASN ILE VAL SEQRES 4 B 266 THR THR LYS ALA LYS VAL ASP LYS LYS LEU GLY ARG PHE SEQRES 5 B 266 PHE PHE SER GLY TYR ASP LYS LYS GLN THR TRP THR VAL SEQRES 6 B 266 GLN ASN ASN GLY HIS SER VAL MET MET LEU LEU GLU ASN SEQRES 7 B 266 LYS ALA SER ILE SER GLY GLY GLY LEU PRO ALA PRO TYR SEQRES 8 B 266 GLN ALA LYS GLN LEU HIS LEU HIS TRP SER ASP LEU PRO SEQRES 9 B 266 TYR LYS GLY SER GLU HIS SER LEU ASP GLY GLU HIS PHE SEQRES 10 B 266 ALA MET GLU MET HIS ILE VAL HIS GLU LYS GLU LYS GLY SEQRES 11 B 266 THR SER ARG ASN VAL LYS GLU ALA GLN ASP PRO GLU ASP SEQRES 12 B 266 GLU ILE ALA VAL LEU ALA PHE LEU VAL GLU ALA GLY THR SEQRES 13 B 266 GLN VAL ASN GLU GLY PHE GLN PRO LEU VAL GLU ALA LEU SEQRES 14 B 266 SER ASN ILE PRO LYS PRO GLU MET SER THR THR MET ALA SEQRES 15 B 266 GLU SER SER LEU LEU ASP LEU LEU PRO LYS GLU GLU LYS SEQRES 16 B 266 LEU ARG HIS TYR PHE ARG TYR LEU GLY SER LEU THR THR SEQRES 17 B 266 PRO THR CYS ASP GLU LYS VAL VAL TRP THR VAL PHE ARG SEQRES 18 B 266 GLU PRO ILE GLN LEU HIS ARG GLU GLN ILE LEU ALA PHE SEQRES 19 B 266 SER GLN LYS LEU TYR TYR ASP LYS GLU GLN THR VAL SER SEQRES 20 B 266 MET LYS ASP ASN VAL ARG PRO LEU GLN GLN LEU GLY GLN SEQRES 21 B 266 ARG THR VAL ILE LYS SER HET ZN A 300 1 HET AG5 A 302 28 HET ZN B 301 1 HET AG5 B 303 28 HETNAM ZN ZINC ION HETNAM AG5 N-(2-PHENYLETHYL)-2-(PHENYLSULFANYL)-5- HETNAM 2 AG5 SULFAMOYLPYRIDINE-3-CARBOXAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 AG5 2(C20 H19 N3 O3 S2) FORMUL 7 HOH *263(H2 O) HELIX 1 1 TYR A 7 SER A 11B 1 7 HELIX 2 2 VAL A 12 TRP A 16 5 5 HELIX 3 3 VAL A 34 ALA A 38 5 5 HELIX 4 4 ASN A 154 GLY A 156 5 3 HELIX 5 5 PHE A 157 SER A 165 1 9 HELIX 6 6 LEU A 181 LEU A 185 5 5 HELIX 7 7 LYS A 187 ARG A 189A 5 6 HELIX 8 8 ARG A 220 LEU A 229 1 11 HELIX 9 9 TYR B 7 SER B 11B 1 7 HELIX 10 10 VAL B 12 TRP B 16 5 5 HELIX 11 11 VAL B 34 ALA B 38 5 5 HELIX 12 12 ASN B 154 GLY B 156 5 3 HELIX 13 13 PHE B 157 LEU B 164 1 8 HELIX 14 14 SER B 165 ILE B 167 5 3 HELIX 15 15 SER B 180 LEU B 184 5 5 HELIX 16 16 LYS B 187 ARG B 189A 5 6 HELIX 17 17 ARG B 220 LEU B 229 1 11 SHEET 1 A 2 HIS A 4 TRP A 5 0 SHEET 2 A 2 CYS A 11G LEU A 11H 1 O LEU A 11H N HIS A 4 SHEET 1 B 2 ASN A 32 ILE A 33 0 SHEET 2 B 2 SER A 108 LEU A 109 1 O SER A 108 N ILE A 33 SHEET 1 C10 LYS A 39 VAL A 40 0 SHEET 2 C10 ILE A 257 LYS A 258 1 O LYS A 258 N LYS A 39 SHEET 3 C10 TYR A 191 GLY A 196 -1 N ARG A 193 O ILE A 257 SHEET 4 C10 VAL A 207 PHE A 212 -1 O VAL A 207 N GLY A 196 SHEET 5 C10 ILE A 141 GLY A 151 1 N ILE A 141 O VAL A 208 SHEET 6 C10 MET A 116 LYS A 124 -1 N MET A 118 O PHE A 146 SHEET 7 C10 TYR A 88 TRP A 97 -1 N LYS A 91 O VAL A 121 SHEET 8 C10 VAL A 66 LEU A 69 -1 N MET A 68 O LEU A 93 SHEET 9 C10 THR A 58 ASN A 61 -1 N GLN A 60 O MET A 67 SHEET 10 C10 SER A 173 THR A 175 -1 O THR A 174 N VAL A 59 SHEET 1 D 6 PHE A 47 SER A 50 0 SHEET 2 D 6 SER A 78 GLY A 81 -1 O SER A 80 N PHE A 48 SHEET 3 D 6 TYR A 88 TRP A 97 -1 O TYR A 88 N ILE A 79 SHEET 4 D 6 MET A 116 LYS A 124 -1 O VAL A 121 N LYS A 91 SHEET 5 D 6 ILE A 141 GLY A 151 -1 O PHE A 146 N MET A 118 SHEET 6 D 6 ILE A 216 HIS A 219 1 O ILE A 216 N LEU A 147 SHEET 1 E 2 ASN B 32 ILE B 33 0 SHEET 2 E 2 SER B 108 LEU B 109 1 O SER B 108 N ILE B 33 SHEET 1 F10 LYS B 39 VAL B 40 0 SHEET 2 F10 ILE B 257 LYS B 258 1 O LYS B 258 N LYS B 39 SHEET 3 F10 TYR B 191 GLY B 196 -1 N ARG B 193 O ILE B 257 SHEET 4 F10 VAL B 207 PHE B 212 -1 O VAL B 207 N GLY B 196 SHEET 5 F10 ILE B 141 GLY B 151 1 N ALA B 145 O THR B 210 SHEET 6 F10 MET B 116 LYS B 124 -1 N MET B 118 O PHE B 146 SHEET 7 F10 TYR B 88 TRP B 97 -1 N LYS B 91 O VAL B 121 SHEET 8 F10 VAL B 66 LEU B 69 -1 N MET B 68 O LEU B 93 SHEET 9 F10 THR B 58 ASN B 61 -1 N GLN B 60 O MET B 67 SHEET 10 F10 SER B 173 THR B 175 -1 O THR B 174 N VAL B 59 SHEET 1 G 6 PHE B 47 SER B 50 0 SHEET 2 G 6 SER B 78 GLY B 81 -1 O SER B 80 N PHE B 48 SHEET 3 G 6 TYR B 88 TRP B 97 -1 O TYR B 88 N ILE B 79 SHEET 4 G 6 MET B 116 LYS B 124 -1 O VAL B 121 N LYS B 91 SHEET 5 G 6 ILE B 141 GLY B 151 -1 O PHE B 146 N MET B 118 SHEET 6 G 6 ILE B 216 HIS B 219 1 O ILE B 216 N LEU B 147 SSBOND 1 CYS A 6 CYS A 11G 1555 1555 2.07 SSBOND 2 CYS A 23 CYS A 203 1555 1555 2.08 SSBOND 3 CYS B 6 CYS B 11G 1555 1555 2.09 SSBOND 4 CYS B 23 CYS B 203 1555 1555 2.06 LINK NE2 HIS A 94 ZN ZN A 300 1555 1555 2.03 LINK NE2 HIS A 96 ZN ZN A 300 1555 1555 2.08 LINK ND1 HIS A 119 ZN ZN A 300 1555 1555 2.09 LINK NE2 HIS B 94 ZN ZN B 301 1555 1555 2.12 LINK NE2 HIS B 96 ZN ZN B 301 1555 1555 2.18 LINK ND1 HIS B 119 ZN ZN B 301 1555 1555 1.97 LINK ZN ZN A 300 N9 AG5 A 302 1555 1555 2.03 LINK ZN ZN B 301 N9 AG5 B 303 1555 1555 1.97 CISPEP 1 SER A 29 PRO A 30 0 2.94 CISPEP 2 PRO A 201 THR A 202 0 9.32 CISPEP 3 SER B 29 PRO B 30 0 0.70 CISPEP 4 PRO B 201 THR B 202 0 5.85 SITE 1 AC1 4 HIS A 94 HIS A 96 HIS A 119 AG5 A 302 SITE 1 AC2 16 TYR A 7 ASN A 62 HIS A 64 SER A 65 SITE 2 AC2 16 MET A 67 GLN A 92 HIS A 94 HIS A 96 SITE 3 AC2 16 HIS A 119 VAL A 121 ILE A 141 LEU A 198 SITE 4 AC2 16 THR A 199 THR A 200 ZN A 300 HOH A 564 SITE 1 AC3 4 HIS B 94 HIS B 96 HIS B 119 AG5 B 303 SITE 1 AC4 17 SER A 128 HOH A 470 TYR B 7 ASN B 62 SITE 2 AC4 17 HIS B 64 SER B 65 GLN B 92 HIS B 94 SITE 3 AC4 17 HIS B 96 HIS B 119 VAL B 121 ILE B 141 SITE 4 AC4 17 LEU B 198 THR B 199 THR B 200 TRP B 209 SITE 5 AC4 17 ZN B 301 CRYST1 125.910 128.556 46.365 90.00 99.88 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007942 0.000000 0.001384 0.00000 SCALE2 0.000000 0.007779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021893 0.00000