HEADER TRANSCRIPTION 03-NOV-08 3F5C TITLE STRUCTURE OF DAX-1:LRH-1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 313-560; COMPND 5 SYNONYM: LIVER RECEPTOR HOMOLOG 1, LRH-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B MEMBER 1; COMPND 10 CHAIN: B, C; COMPND 11 FRAGMENT: UNP RESIDUES 205-472; COMPND 12 SYNONYM: NUCLEAR RECEPTOR DAX-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NR5A2, LRH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACYCDUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: NR0B1, AHCH, DAX1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTIONAL COREPRESSOR, REGULATORY COMPLEX, KEYWDS 2 DNA-BINDING, LIPID-BINDING, METAL-BINDING, NUCLEUS, RECEPTOR, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC, ZINC-FINGER, KEYWDS 4 CYTOPLASM, REPRESSOR EXPDTA X-RAY DIFFRACTION AUTHOR R.J.FLETTERICK,E.P.SABLIN REVDAT 3 20-OCT-21 3F5C 1 SEQADV REVDAT 2 24-JUL-19 3F5C 1 REMARK REVDAT 1 23-DEC-08 3F5C 0 JRNL AUTH E.P.SABLIN,A.WOODS,I.N.KRYLOVA,P.HWANG,H.A.INGRAHAM, JRNL AUTH 2 R.J.FLETTERICK JRNL TITL THE STRUCTURE OF COREPRESSOR DAX-1 BOUND TO ITS TARGET JRNL TITL 2 NUCLEAR RECEPTOR LRH-1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 18390 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 19015525 JRNL DOI 10.1073/PNAS.0808936105 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 24366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.870 REMARK 3 FREE R VALUE TEST SET COUNT : 700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7861 - 5.1182 1.00 4863 129 0.1873 0.2567 REMARK 3 2 5.1182 - 4.0683 0.99 4745 174 0.1667 0.2342 REMARK 3 3 4.0683 - 3.5558 0.99 4730 143 0.2202 0.2786 REMARK 3 4 3.5558 - 3.2314 0.99 4749 139 0.3000 0.3393 REMARK 3 5 3.2314 - 3.0000 0.95 4579 115 0.3827 0.4025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.27 REMARK 3 B_SOL : 60.49 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5036 REMARK 3 ANGLE : 1.253 6813 REMARK 3 CHIRALITY : 0.073 781 REMARK 3 PLANARITY : 0.006 861 REMARK 3 DIHEDRAL : 15.382 1863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 84.9069 41.1261 69.0478 REMARK 3 T TENSOR REMARK 3 T11: 0.4680 T22: 0.3151 REMARK 3 T33: 0.4378 T12: 0.1362 REMARK 3 T13: -0.2337 T23: -0.2672 REMARK 3 L TENSOR REMARK 3 L11: 5.4661 L22: 5.5721 REMARK 3 L33: 3.6729 L12: -1.6936 REMARK 3 L13: 1.4893 L23: -0.0146 REMARK 3 S TENSOR REMARK 3 S11: -0.2929 S12: -0.4708 S13: 0.8802 REMARK 3 S21: 0.9052 S22: 0.1252 S23: -0.5328 REMARK 3 S31: -0.3866 S32: 0.1442 S33: 0.0845 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 56.0031 43.5002 47.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.3121 REMARK 3 T33: 0.1429 T12: 0.1241 REMARK 3 T13: -0.1758 T23: 0.2193 REMARK 3 L TENSOR REMARK 3 L11: 5.6963 L22: 3.4832 REMARK 3 L33: 2.9496 L12: 0.6719 REMARK 3 L13: -0.5944 L23: 1.1399 REMARK 3 S TENSOR REMARK 3 S11: 0.1913 S12: 0.1125 S13: -0.0504 REMARK 3 S21: -0.1627 S22: -0.1264 S23: 0.0886 REMARK 3 S31: 0.1419 S32: 0.1101 S33: -0.0261 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 87.9032 3.9320 45.0439 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.3417 REMARK 3 T33: 0.6514 T12: 0.0271 REMARK 3 T13: -0.0627 T23: -0.2444 REMARK 3 L TENSOR REMARK 3 L11: 0.3934 L22: 5.1570 REMARK 3 L33: 6.1197 L12: 0.7796 REMARK 3 L13: -0.9765 L23: 4.4003 REMARK 3 S TENSOR REMARK 3 S11: -0.2029 S12: -0.1129 S13: -0.1102 REMARK 3 S21: -0.0806 S22: 0.1290 S23: -0.4620 REMARK 3 S31: -0.0185 S32: 0.2999 S33: -0.0221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24366 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1PK5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 20% PEG 8000, 1 MM DEOXY REMARK 280 -BIGCHAP, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.72750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.09125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.36375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 313 REMARK 465 THR A 314 REMARK 465 ASN A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 GLY B 205 REMARK 465 GLU B 206 REMARK 465 GLU B 207 REMARK 465 GLN B 208 REMARK 465 PRO B 209 REMARK 465 GLN B 210 REMARK 465 GLN B 211 REMARK 465 ILE B 212 REMARK 465 SER B 213 REMARK 465 VAL B 214 REMARK 465 ALA B 215 REMARK 465 SER B 216 REMARK 465 GLY B 217 REMARK 465 THR B 218 REMARK 465 PRO B 219 REMARK 465 VAL B 220 REMARK 465 SER B 221 REMARK 465 ALA B 222 REMARK 465 ASP B 223 REMARK 465 GLN B 224 REMARK 465 THR B 225 REMARK 465 PRO B 226 REMARK 465 ALA B 227 REMARK 465 THR B 228 REMARK 465 PRO B 229 REMARK 465 GLN B 230 REMARK 465 GLU B 231 REMARK 465 GLN B 232 REMARK 465 PRO B 233 REMARK 465 ARG B 234 REMARK 465 ALA B 235 REMARK 465 PRO B 236 REMARK 465 TRP B 237 REMARK 465 TRP B 238 REMARK 465 ASP B 239 REMARK 465 ALA B 240 REMARK 465 SER B 241 REMARK 465 PRO B 242 REMARK 465 GLY B 243 REMARK 465 VAL B 244 REMARK 465 GLN B 245 REMARK 465 ARG B 246 REMARK 465 LEU B 247 REMARK 465 ILE B 248 REMARK 465 THR B 249 REMARK 465 LEU B 250 REMARK 465 PRO B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 ASN B 317 REMARK 465 THR B 318 REMARK 465 THR B 319 REMARK 465 GLN B 320 REMARK 465 GLU B 321 REMARK 465 MET B 322 REMARK 465 LEU B 323 REMARK 465 THR B 324 REMARK 465 THR B 325 REMARK 465 ARG B 326 REMARK 465 ARG B 327 REMARK 465 GLN B 328 REMARK 465 GLU B 329 REMARK 465 THR B 330 REMARK 465 GLU B 331 REMARK 465 GLY B 332 REMARK 465 PRO B 333 REMARK 465 GLU B 334 REMARK 465 PRO B 335 REMARK 465 ALA B 336 REMARK 465 GLU B 337 REMARK 465 PRO B 338 REMARK 465 GLN B 339 REMARK 465 ALA B 340 REMARK 465 THR B 341 REMARK 465 GLU B 342 REMARK 465 GLN B 343 REMARK 465 PRO B 344 REMARK 465 GLN B 345 REMARK 465 MET B 346 REMARK 465 VAL B 347 REMARK 465 SER B 348 REMARK 465 ALA B 349 REMARK 465 GLU B 350 REMARK 465 ALA B 351 REMARK 465 GLY B 352 REMARK 465 GLY C 205 REMARK 465 GLU C 206 REMARK 465 GLU C 207 REMARK 465 GLN C 208 REMARK 465 PRO C 209 REMARK 465 GLN C 210 REMARK 465 GLN C 211 REMARK 465 ILE C 212 REMARK 465 SER C 213 REMARK 465 VAL C 214 REMARK 465 ALA C 215 REMARK 465 SER C 216 REMARK 465 GLY C 217 REMARK 465 THR C 218 REMARK 465 PRO C 219 REMARK 465 VAL C 220 REMARK 465 SER C 221 REMARK 465 ALA C 222 REMARK 465 ASP C 223 REMARK 465 GLN C 224 REMARK 465 THR C 225 REMARK 465 PRO C 226 REMARK 465 ALA C 227 REMARK 465 THR C 228 REMARK 465 PRO C 229 REMARK 465 GLN C 230 REMARK 465 GLU C 231 REMARK 465 GLN C 232 REMARK 465 PRO C 233 REMARK 465 ARG C 234 REMARK 465 ALA C 235 REMARK 465 PRO C 236 REMARK 465 TRP C 237 REMARK 465 TRP C 238 REMARK 465 ASP C 239 REMARK 465 ALA C 240 REMARK 465 SER C 241 REMARK 465 PRO C 242 REMARK 465 GLY C 243 REMARK 465 VAL C 244 REMARK 465 GLN C 245 REMARK 465 ARG C 246 REMARK 465 LEU C 247 REMARK 465 ILE C 248 REMARK 465 THR C 249 REMARK 465 LEU C 250 REMARK 465 LYS C 251 REMARK 465 ILE C 313 REMARK 465 PRO C 314 REMARK 465 GLU C 315 REMARK 465 THR C 316 REMARK 465 ASN C 317 REMARK 465 THR C 318 REMARK 465 THR C 319 REMARK 465 GLN C 320 REMARK 465 GLU C 321 REMARK 465 MET C 322 REMARK 465 LEU C 323 REMARK 465 THR C 324 REMARK 465 THR C 325 REMARK 465 ARG C 326 REMARK 465 ARG C 327 REMARK 465 GLN C 328 REMARK 465 GLU C 329 REMARK 465 THR C 330 REMARK 465 GLU C 331 REMARK 465 GLY C 332 REMARK 465 PRO C 333 REMARK 465 GLU C 334 REMARK 465 PRO C 335 REMARK 465 ALA C 336 REMARK 465 GLU C 337 REMARK 465 PRO C 338 REMARK 465 GLN C 339 REMARK 465 ALA C 340 REMARK 465 THR C 341 REMARK 465 GLU C 342 REMARK 465 GLN C 343 REMARK 465 PRO C 344 REMARK 465 GLN C 345 REMARK 465 MET C 346 REMARK 465 VAL C 347 REMARK 465 SER C 348 REMARK 465 ALA C 349 REMARK 465 GLU C 350 REMARK 465 ALA C 351 REMARK 465 GLY C 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 509 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO A 509 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 PRO B 356 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 333 -101.09 104.50 REMARK 500 GLU A 334 -29.44 130.37 REMARK 500 GLN A 355 -165.08 -104.01 REMARK 500 LEU A 358 -84.95 100.44 REMARK 500 SER A 359 -67.59 -122.22 REMARK 500 LEU A 388 117.39 73.56 REMARK 500 LYS A 418 -70.26 -145.25 REMARK 500 ASN A 445 -4.32 -51.54 REMARK 500 GLU A 452 -34.05 -34.69 REMARK 500 VAL A 480 -119.20 -107.27 REMARK 500 LYS A 481 -95.93 -169.04 REMARK 500 THR A 512 -57.31 68.50 REMARK 500 LEU B 355 139.35 -170.44 REMARK 500 GLU B 423 -77.39 109.45 REMARK 500 TYR B 424 -7.00 76.67 REMARK 500 ASN B 442 -43.80 122.22 REMARK 500 SER B 443 3.72 83.32 REMARK 500 LYS B 471 -123.27 43.39 REMARK 500 PRO C 281 8.13 -64.46 REMARK 500 LEU C 282 -57.38 75.74 REMARK 500 SER C 291 -53.89 -128.70 REMARK 500 MET C 420 -82.97 -151.87 REMARK 500 ARG C 439 -35.00 -32.76 REMARK 500 PHE C 440 63.96 -104.20 REMARK 500 ASN C 442 -54.42 70.14 REMARK 500 SER C 443 -3.79 79.18 REMARK 500 ALA C 457 6.74 85.57 REMARK 500 SER C 459 164.99 81.27 REMARK 500 ASP C 461 -54.00 -126.89 REMARK 500 ALA C 470 -70.80 -49.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 3F5C A 313 560 UNP P45448 NR5A2_MOUSE 313 560 DBREF 3F5C B 205 472 UNP Q61066 NR0B1_MOUSE 205 472 DBREF 3F5C C 205 472 UNP Q61066 NR0B1_MOUSE 205 472 SEQADV 3F5C LEU A 525 UNP P45448 ILE 525 ENGINEERED MUTATION SEQRES 1 A 248 GLN THR ASN SER PRO ALA SER ILE PRO HIS LEU ILE LEU SEQRES 2 A 248 GLU LEU LEU LYS CYS GLU PRO ASP GLU PRO GLN VAL GLN SEQRES 3 A 248 ALA LYS ILE MET ALA TYR LEU GLN GLN GLU GLN SER ASN SEQRES 4 A 248 ARG ASN ARG GLN GLU LYS LEU SER ALA PHE GLY LEU LEU SEQRES 5 A 248 CYS LYS MET ALA ASP GLN THR LEU PHE SER ILE VAL GLU SEQRES 6 A 248 TRP ALA ARG SER SER ILE PHE PHE ARG GLU LEU LYS VAL SEQRES 7 A 248 ASP ASP GLN MET LYS LEU LEU GLN ASN CYS TRP SER GLU SEQRES 8 A 248 LEU LEU ILE LEU ASP HIS ILE TYR ARG GLN VAL ALA HIS SEQRES 9 A 248 GLY LYS GLU GLY THR ILE PHE LEU VAL THR GLY GLU HIS SEQRES 10 A 248 VAL ASP TYR SER THR ILE ILE SER HIS THR GLU VAL ALA SEQRES 11 A 248 PHE ASN ASN LEU LEU SER LEU ALA GLN GLU LEU VAL VAL SEQRES 12 A 248 ARG LEU ARG SER LEU GLN PHE ASP GLN ARG GLU PHE VAL SEQRES 13 A 248 CYS LEU LYS PHE LEU VAL LEU PHE SER SER ASP VAL LYS SEQRES 14 A 248 ASN LEU GLU ASN LEU GLN LEU VAL GLU GLY VAL GLN GLU SEQRES 15 A 248 GLN VAL ASN ALA ALA LEU LEU ASP TYR THR VAL CYS ASN SEQRES 16 A 248 TYR PRO GLN GLN THR GLU LYS PHE GLY GLN LEU LEU LEU SEQRES 17 A 248 ARG LEU PRO GLU LEU ARG ALA ILE SER LYS GLN ALA GLU SEQRES 18 A 248 ASP TYR LEU TYR TYR LYS HIS VAL ASN GLY ASP VAL PRO SEQRES 19 A 248 TYR ASN ASN LEU LEU ILE GLU MET LEU HIS ALA LYS ARG SEQRES 20 A 248 ALA SEQRES 1 B 268 GLY GLU GLU GLN PRO GLN GLN ILE SER VAL ALA SER GLY SEQRES 2 B 268 THR PRO VAL SER ALA ASP GLN THR PRO ALA THR PRO GLN SEQRES 3 B 268 GLU GLN PRO ARG ALA PRO TRP TRP ASP ALA SER PRO GLY SEQRES 4 B 268 VAL GLN ARG LEU ILE THR LEU LYS ASP PRO GLN VAL VAL SEQRES 5 B 268 CYS GLU ALA ALA SER ALA GLY LEU LEU LYS THR LEU ARG SEQRES 6 B 268 PHE VAL LYS TYR LEU PRO CYS PHE GLN ILE LEU PRO LEU SEQRES 7 B 268 ASP GLN GLN LEU VAL LEU VAL ARG SER CYS TRP ALA PRO SEQRES 8 B 268 LEU LEU MET LEU GLU LEU ALA GLN ASP HIS LEU HIS PHE SEQRES 9 B 268 GLU MET MET GLU ILE PRO GLU THR ASN THR THR GLN GLU SEQRES 10 B 268 MET LEU THR THR ARG ARG GLN GLU THR GLU GLY PRO GLU SEQRES 11 B 268 PRO ALA GLU PRO GLN ALA THR GLU GLN PRO GLN MET VAL SEQRES 12 B 268 SER ALA GLU ALA GLY HIS LEU LEU PRO ALA ALA ALA VAL SEQRES 13 B 268 GLN ALA ILE LYS SER PHE PHE PHE LYS CYS TRP SER LEU SEQRES 14 B 268 ASN ILE ASP THR LYS GLU TYR ALA TYR LEU LYS GLY THR SEQRES 15 B 268 VAL LEU PHE ASN PRO ASP LEU PRO GLY LEU GLN CYS VAL SEQRES 16 B 268 LYS TYR ILE GLU GLY LEU GLN TRP ARG THR GLN GLN ILE SEQRES 17 B 268 LEU THR GLU HIS ILE ARG MET MET GLN ARG GLU TYR GLN SEQRES 18 B 268 ILE ARG SER ALA GLU LEU ASN SER ALA LEU PHE LEU LEU SEQRES 19 B 268 ARG PHE ILE ASN SER ASP VAL VAL THR GLU LEU PHE PHE SEQRES 20 B 268 ARG PRO ILE ILE GLY ALA VAL SER MET ASP ASP MET MET SEQRES 21 B 268 LEU GLU MET LEU CYS ALA LYS LEU SEQRES 1 C 268 GLY GLU GLU GLN PRO GLN GLN ILE SER VAL ALA SER GLY SEQRES 2 C 268 THR PRO VAL SER ALA ASP GLN THR PRO ALA THR PRO GLN SEQRES 3 C 268 GLU GLN PRO ARG ALA PRO TRP TRP ASP ALA SER PRO GLY SEQRES 4 C 268 VAL GLN ARG LEU ILE THR LEU LYS ASP PRO GLN VAL VAL SEQRES 5 C 268 CYS GLU ALA ALA SER ALA GLY LEU LEU LYS THR LEU ARG SEQRES 6 C 268 PHE VAL LYS TYR LEU PRO CYS PHE GLN ILE LEU PRO LEU SEQRES 7 C 268 ASP GLN GLN LEU VAL LEU VAL ARG SER CYS TRP ALA PRO SEQRES 8 C 268 LEU LEU MET LEU GLU LEU ALA GLN ASP HIS LEU HIS PHE SEQRES 9 C 268 GLU MET MET GLU ILE PRO GLU THR ASN THR THR GLN GLU SEQRES 10 C 268 MET LEU THR THR ARG ARG GLN GLU THR GLU GLY PRO GLU SEQRES 11 C 268 PRO ALA GLU PRO GLN ALA THR GLU GLN PRO GLN MET VAL SEQRES 12 C 268 SER ALA GLU ALA GLY HIS LEU LEU PRO ALA ALA ALA VAL SEQRES 13 C 268 GLN ALA ILE LYS SER PHE PHE PHE LYS CYS TRP SER LEU SEQRES 14 C 268 ASN ILE ASP THR LYS GLU TYR ALA TYR LEU LYS GLY THR SEQRES 15 C 268 VAL LEU PHE ASN PRO ASP LEU PRO GLY LEU GLN CYS VAL SEQRES 16 C 268 LYS TYR ILE GLU GLY LEU GLN TRP ARG THR GLN GLN ILE SEQRES 17 C 268 LEU THR GLU HIS ILE ARG MET MET GLN ARG GLU TYR GLN SEQRES 18 C 268 ILE ARG SER ALA GLU LEU ASN SER ALA LEU PHE LEU LEU SEQRES 19 C 268 ARG PHE ILE ASN SER ASP VAL VAL THR GLU LEU PHE PHE SEQRES 20 C 268 ARG PRO ILE ILE GLY ALA VAL SER MET ASP ASP MET MET SEQRES 21 C 268 LEU GLU MET LEU CYS ALA LYS LEU HELIX 1 1 PRO A 321 LEU A 328 1 8 HELIX 2 2 LYS A 329 GLU A 331 5 3 HELIX 3 3 PRO A 335 ASN A 351 1 17 HELIX 4 4 ALA A 360 SER A 381 1 22 HELIX 5 5 SER A 382 GLU A 387 1 6 HELIX 6 6 LYS A 389 HIS A 416 1 28 HELIX 7 7 TYR A 432 THR A 439 1 8 HELIX 8 8 GLU A 440 SER A 459 1 20 HELIX 9 9 ASP A 463 PHE A 476 1 14 HELIX 10 10 ASN A 485 ASN A 507 1 23 HELIX 11 11 GLU A 513 LEU A 519 1 7 HELIX 12 12 LEU A 522 VAL A 541 1 20 HELIX 13 13 ASN A 549 ALA A 560 1 12 HELIX 14 14 ASP B 252 TYR B 273 1 22 HELIX 15 15 LEU B 274 ILE B 279 1 6 HELIX 16 16 PRO B 281 ASP B 304 1 24 HELIX 17 17 ALA B 358 LEU B 373 1 16 HELIX 18 18 ASP B 376 PHE B 389 1 14 HELIX 19 19 CYS B 398 GLN B 421 1 24 HELIX 20 20 GLN B 425 ARG B 439 1 15 HELIX 21 21 ASP B 444 PHE B 451 1 8 HELIX 22 22 PHE B 451 GLY B 456 1 6 HELIX 23 23 SER B 459 LEU B 468 1 10 HELIX 24 24 ASP C 252 TYR C 273 1 22 HELIX 25 25 LEU C 274 ILE C 279 1 6 HELIX 26 26 LEU C 282 ASP C 304 1 23 HELIX 27 27 PRO C 356 LEU C 373 1 18 HELIX 28 28 ASP C 376 PHE C 389 1 14 HELIX 29 29 CYS C 398 MET C 419 1 22 HELIX 30 30 GLU C 423 ARG C 439 1 17 HELIX 31 31 SER C 443 PHE C 451 1 9 HELIX 32 32 PHE C 451 GLY C 456 1 6 HELIX 33 33 ASP C 461 LYS C 471 1 11 SHEET 1 A 2 THR A 421 PHE A 423 0 SHEET 2 A 2 HIS A 429 ASP A 431 -1 O VAL A 430 N ILE A 422 CISPEP 1 LEU A 358 SER A 359 0 -2.71 CRYST1 103.355 103.355 117.455 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009675 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008514 0.00000