HEADER RNA BINDING PROTEIN, SPLICING 22-AUG-08 3E9L TITLE CRYSTAL STRUCTURE OF HUMAN PRP8, RESIDUES 1755-2016 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-PROCESSING-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ENDONUCLEASE DOMAIN; COMPND 5 SYNONYM: SPLICING FACTOR PRP8, PRP8 HOMOLOG, 220 KDA U5 SNRNP- COMPND 6 SPECIFIC PROTEIN, P220; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRPF8, PRPC8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOTIDYL TRANSFER, DISEASE MUTATION, MRNA PROCESSING, MRNA KEYWDS 2 SPLICING, NUCLEUS, PHOSPHOPROTEIN, RETINITIS PIGMENTOSA, RNA- KEYWDS 3 BINDING, SENSORY TRANSDUCTION, SPLICEOSOME, VISION, RNA BINDING KEYWDS 4 PROTEIN, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR V.PENA,A.ROZOV,M.C.WAHL REVDAT 5 21-FEB-24 3E9L 1 REMARK LINK REVDAT 4 13-JUL-11 3E9L 1 VERSN REVDAT 3 16-FEB-10 3E9L 1 JRNL REVDAT 2 24-FEB-09 3E9L 1 VERSN REVDAT 1 07-OCT-08 3E9L 0 JRNL AUTH V.PENA,A.ROZOV,P.FABRIZIO,R.LUHRMANN,M.C.WAHL JRNL TITL STRUCTURE AND FUNCTION OF AN RNASE H DOMAIN AT THE HEART OF JRNL TITL 2 THE SPLICEOSOME. JRNL REF EMBO J. V. 27 2929 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18843295 JRNL DOI 10.1038/EMBOJ.2008.209 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 28264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.441 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2178 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2964 ; 1.118 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 5.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;38.956 ;24.947 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;14.431 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1605 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1052 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1537 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 219 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.137 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1312 ; 0.492 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 0.910 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 902 ; 1.449 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 809 ; 2.414 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1761 A 1921 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3020 19.1870 8.1230 REMARK 3 T TENSOR REMARK 3 T11: -0.0862 T22: -0.0917 REMARK 3 T33: -0.1372 T12: -0.0160 REMARK 3 T13: -0.0084 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.0757 L22: 1.7629 REMARK 3 L33: 2.4670 L12: -0.1661 REMARK 3 L13: -0.0071 L23: 0.7573 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.0623 S13: 0.0791 REMARK 3 S21: -0.2832 S22: 0.1438 S23: -0.0033 REMARK 3 S31: -0.2325 S32: 0.0909 S33: -0.1328 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1922 A 2014 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1560 14.8720 26.7180 REMARK 3 T TENSOR REMARK 3 T11: -0.1366 T22: -0.0190 REMARK 3 T33: -0.0800 T12: 0.0400 REMARK 3 T13: 0.0451 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.5335 L22: 3.8894 REMARK 3 L33: 1.5664 L12: -0.1882 REMARK 3 L13: -0.2275 L23: -0.2631 REMARK 3 S TENSOR REMARK 3 S11: -0.0820 S12: -0.1205 S13: 0.0519 REMARK 3 S21: 0.2861 S22: 0.1325 S23: 0.3810 REMARK 3 S31: 0.0472 S32: -0.2622 S33: -0.0505 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.17533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.08767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.08767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.17533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1773 -160.03 -104.43 REMARK 500 PHE A1794 -36.53 64.44 REMARK 500 PHE A1794 -29.62 63.63 REMARK 500 ASP A1921 -127.11 46.76 REMARK 500 ASN A1946 77.97 -152.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A1887 O REMARK 620 2 LEU A1889 O 91.0 REMARK 620 3 GLN A1890 OE1 176.1 92.7 REMARK 620 4 HOH A2036 O 95.7 87.8 85.3 REMARK 620 5 HOH A2249 O 88.8 176.2 87.5 88.4 REMARK 620 6 HOH A2295 O 95.6 98.6 82.9 166.9 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2017 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2060 O REMARK 620 2 HOH A2067 O 95.5 REMARK 620 3 HOH A2071 O 91.6 90.5 REMARK 620 4 HOH A2167 O 177.7 86.9 88.4 REMARK 620 5 HOH A2183 O 82.6 91.8 174.0 97.2 REMARK 620 6 HOH A2277 O 89.2 174.3 92.6 88.5 85.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2017 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2018 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E9O RELATED DB: PDB REMARK 900 RELATED ID: 3E9P RELATED DB: PDB DBREF 3E9L A 1760 2016 UNP Q6P2Q9 PRP8_HUMAN 1760 2016 SEQRES 1 A 257 GLU PRO TYR LEU SER SER GLN ASN TYR GLY GLU LEU PHE SEQRES 2 A 257 SER ASN GLN ILE ILE TRP PHE VAL ASP ASP THR ASN VAL SEQRES 3 A 257 TYR ARG VAL THR ILE HIS LYS THR PHE GLU GLY ASN LEU SEQRES 4 A 257 THR THR LYS PRO ILE ASN GLY ALA ILE PHE ILE PHE ASN SEQRES 5 A 257 PRO ARG THR GLY GLN LEU PHE LEU LYS ILE ILE HIS THR SEQRES 6 A 257 SER VAL TRP ALA GLY GLN LYS ARG LEU GLY GLN LEU ALA SEQRES 7 A 257 LYS TRP LYS THR ALA GLU GLU VAL ALA ALA LEU ILE ARG SEQRES 8 A 257 SER LEU PRO VAL GLU GLU GLN PRO LYS GLN ILE ILE VAL SEQRES 9 A 257 THR ARG LYS GLY MET LEU ASP PRO LEU GLU VAL HIS LEU SEQRES 10 A 257 LEU ASP PHE PRO ASN ILE VAL ILE LYS GLY SER GLU LEU SEQRES 11 A 257 GLN LEU PRO PHE GLN ALA CYS LEU LYS VAL GLU LYS PHE SEQRES 12 A 257 GLY ASP LEU ILE LEU LYS ALA THR GLU PRO GLN MET VAL SEQRES 13 A 257 LEU PHE ASN LEU TYR ASP ASP TRP LEU LYS THR ILE SER SEQRES 14 A 257 SER TYR THR ALA PHE SER ARG LEU ILE LEU ILE LEU ARG SEQRES 15 A 257 ALA LEU HIS VAL ASN ASN ASP ARG ALA LYS VAL ILE LEU SEQRES 16 A 257 LYS PRO ASP LYS THR THR ILE THR GLU PRO HIS HIS ILE SEQRES 17 A 257 TRP PRO THR LEU THR ASP GLU GLU TRP ILE LYS VAL GLU SEQRES 18 A 257 VAL GLN LEU LYS ASP LEU ILE LEU ALA ASP TYR GLY LYS SEQRES 19 A 257 LYS ASN ASN VAL ASN VAL ALA SER LEU THR GLN SER GLU SEQRES 20 A 257 ILE ARG ASP ILE ILE LEU GLY MET GLU ILE HET NA A 1 1 HET NA A2017 1 HET CL A2018 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 5 HOH *315(H2 O) HELIX 1 1 ASN A 1767 SER A 1773 5 7 HELIX 2 2 HIS A 1823 ALA A 1828 5 6 HELIX 3 3 ARG A 1832 LEU A 1852 1 21 HELIX 4 4 PRO A 1853 GLN A 1857 5 5 HELIX 5 5 ARG A 1865 GLY A 1867 5 3 HELIX 6 6 MET A 1868 LEU A 1876 1 9 HELIX 7 7 PRO A 1892 LYS A 1898 5 7 HELIX 8 8 VAL A 1899 ALA A 1909 1 11 HELIX 9 9 ASP A 1922 THR A 1926 5 5 HELIX 10 10 SER A 1928 ASN A 1946 1 19 HELIX 11 11 ASN A 1946 LEU A 1954 1 9 HELIX 12 12 THR A 1972 ASN A 1996 1 25 HELIX 13 13 ASN A 1998 LEU A 2002 5 5 HELIX 14 14 THR A 2003 GLY A 2013 1 11 SHEET 1 A 7 PRO A1761 LEU A1763 0 SHEET 2 A 7 VAL A1883 SER A1887 1 O GLY A1886 N LEU A1763 SHEET 3 A 7 GLN A1860 VAL A1863 1 N ILE A1861 O VAL A1883 SHEET 4 A 7 ILE A1777 ASP A1781 1 N TRP A1778 O ILE A1862 SHEET 5 A 7 GLY A1805 PHE A1810 -1 O PHE A1808 N ASP A1781 SHEET 6 A 7 GLN A1816 ILE A1822 -1 O PHE A1818 N ILE A1809 SHEET 7 A 7 GLN A1913 ASN A1918 -1 O PHE A1917 N LEU A1817 SHEET 1 B 2 ARG A1787 LYS A1792 0 SHEET 2 B 2 LEU A1798 ILE A1803 -1 O THR A1799 N HIS A1791 LINK NA NA A 1 O SER A1887 1555 1555 2.56 LINK NA NA A 1 O LEU A1889 1555 1555 2.25 LINK NA NA A 1 OE1 GLN A1890 1555 1555 2.64 LINK NA NA A 1 O BHOH A2036 1555 1555 2.20 LINK NA NA A 1 O HOH A2249 1555 1555 2.49 LINK NA NA A 1 O HOH A2295 1555 1555 2.26 LINK NA NA A2017 O HOH A2060 1555 1555 2.29 LINK NA NA A2017 O HOH A2067 1555 1555 2.55 LINK NA NA A2017 O HOH A2071 1555 1555 2.25 LINK NA NA A2017 O HOH A2167 1555 1555 2.50 LINK NA NA A2017 O HOH A2183 1555 1555 2.38 LINK NA NA A2017 O HOH A2277 1555 1555 2.37 SITE 1 AC1 6 SER A1887 LEU A1889 GLN A1890 HOH A2036 SITE 2 AC1 6 HOH A2249 HOH A2295 SITE 1 AC2 6 HOH A2060 HOH A2067 HOH A2071 HOH A2167 SITE 2 AC2 6 HOH A2183 HOH A2277 SITE 1 AC3 4 ARG A1832 GLN A1835 SER A1929 HOH A2056 CRYST1 83.426 83.426 96.263 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011987 0.006921 0.000000 0.00000 SCALE2 0.000000 0.013841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010388 0.00000