HEADER TRANSCRIPTION 11-DEC-07 3BLR TITLE CRYSTAL STRUCTURE OF HUMAN CDK9/CYCLINT1 IN COMPLEX WITH FLAVOPIRIDOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-330; COMPND 5 SYNONYM: CYCLIN-DEPENDENT KINASE 9, SERINE/THREONINE-PROTEIN KINASE COMPND 6 PITALRE, C-2K, CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 4; COMPND 7 EC: 2.7.11.22, 2.7.11.23; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYCLIN-T1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 2-259; COMPND 13 SYNONYM: CYCT1, CYCLIN-T; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK9; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1392; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: CCNT1; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PVL1392 KEYWDS TRANSCRIPTIONAL CDK-CYCLIN COMPLEX, PHOSPHORYLATED, FLAVOPIRIDOL, KEYWDS 2 ALTERNATIVE SPLICING, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 3 NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, SERINE/THREONINE-PROTEIN KEYWDS 4 KINASE, TRANSCRIPTION REGULATION, TRANSFERASE, ACETYLATION, CELL KEYWDS 5 CYCLE, CELL DIVISION, COILED COIL, HOST-VIRUS INTERACTION, KEYWDS 6 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUMLI,G.LOLLI,E.D.LOWE,L.N.JOHNSON REVDAT 5 10-NOV-21 3BLR 1 REMARK SEQADV LINK REVDAT 4 19-MAY-09 3BLR 1 REMARK REVDAT 3 24-FEB-09 3BLR 1 VERSN REVDAT 2 12-AUG-08 3BLR 1 JRNL REVDAT 1 01-JUL-08 3BLR 0 JRNL AUTH S.BAUMLI,G.LOLLI,E.D.LOWE,S.TROIANI,L.RUSCONI,A.N.BULLOCK, JRNL AUTH 2 J.E.DEBRECZENI,S.KNAPP,L.N.JOHNSON JRNL TITL THE STRUCTURE OF P-TEFB (CDK9/CYCLIN T1), ITS COMPLEX WITH JRNL TITL 2 FLAVOPIRIDOL AND REGULATION BY PHOSPHORYLATION JRNL REF EMBO J. V. 27 1907 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18566585 JRNL DOI 10.1038/EMBOJ.2008.121 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9600 - 12.8970 0.86 461 0 0.2560 0.0000 REMARK 3 2 12.8970 - 10.3100 0.88 464 0 0.1300 0.0000 REMARK 3 3 10.3100 - 9.0280 0.94 495 0 0.1160 0.0000 REMARK 3 4 9.0280 - 8.2120 0.96 502 0 0.1300 0.0000 REMARK 3 5 8.2120 - 7.6290 0.94 504 0 0.1390 0.0000 REMARK 3 6 7.6290 - 7.1830 0.95 520 0 0.1600 0.0000 REMARK 3 7 7.1830 - 6.8260 0.95 491 0 0.1620 0.0000 REMARK 3 8 6.8260 - 6.5300 0.92 474 0 0.1730 0.0000 REMARK 3 9 6.5300 - 6.2800 0.96 507 0 0.1820 0.0000 REMARK 3 10 6.2800 - 6.0640 0.94 499 0 0.1850 0.0000 REMARK 3 11 6.0640 - 5.8760 0.94 499 0 0.1630 0.0000 REMARK 3 12 5.8760 - 5.7080 0.93 477 0 0.1590 0.0000 REMARK 3 13 5.7080 - 5.5580 0.97 518 0 0.1600 0.0000 REMARK 3 14 5.5580 - 5.4230 0.95 494 0 0.1360 0.0000 REMARK 3 15 5.4230 - 5.3000 0.95 512 0 0.1490 0.0000 REMARK 3 16 5.3000 - 5.1880 0.95 516 0 0.1340 0.0000 REMARK 3 17 5.1880 - 5.0840 0.91 494 0 0.1290 0.0000 REMARK 3 18 5.0840 - 4.9890 0.96 472 0 0.1260 0.0000 REMARK 3 19 4.9890 - 4.9000 0.95 534 0 0.1210 0.0000 REMARK 3 20 4.9000 - 4.8170 0.97 480 0 0.1260 0.0000 REMARK 3 21 4.8170 - 4.7390 0.94 513 0 0.1170 0.0000 REMARK 3 22 4.7390 - 4.6670 0.93 486 0 0.1400 0.0000 REMARK 3 23 4.6670 - 4.5980 0.93 486 0 0.1290 0.0000 REMARK 3 24 4.5980 - 4.5330 0.96 512 0 0.1370 0.0000 REMARK 3 25 4.5330 - 4.4720 0.94 518 0 0.1360 0.0000 REMARK 3 26 4.4720 - 4.4140 0.96 443 0 0.1270 0.0000 REMARK 3 27 4.4140 - 4.3590 0.96 586 0 0.1240 0.0000 REMARK 3 28 4.3590 - 4.3070 0.95 492 0 0.1350 0.0000 REMARK 3 29 4.3070 - 4.2570 0.96 489 0 0.1400 0.0000 REMARK 3 30 4.2570 - 4.2090 0.97 479 0 0.1320 0.0000 REMARK 3 31 4.2090 - 4.1630 0.95 534 0 0.1470 0.0000 REMARK 3 32 4.1630 - 4.1200 0.94 497 0 0.1330 0.0000 REMARK 3 33 4.1200 - 4.0770 0.94 486 0 0.1360 0.0000 REMARK 3 34 4.0770 - 4.0370 0.93 505 0 0.1430 0.0000 REMARK 3 35 4.0370 - 3.9980 0.94 476 0 0.1570 0.0000 REMARK 3 36 3.9980 - 3.9610 0.95 542 0 0.1500 0.0000 REMARK 3 37 3.9610 - 3.9250 0.97 498 0 0.1610 0.0000 REMARK 3 38 3.9250 - 3.8900 0.94 464 0 0.1620 0.0000 REMARK 3 39 3.8900 - 3.8570 0.94 513 0 0.1670 0.0000 REMARK 3 40 3.8570 - 3.8250 0.96 516 0 0.1630 0.0000 REMARK 3 41 3.8250 - 3.7930 0.95 530 0 0.1570 0.0000 REMARK 3 42 3.7930 - 3.7630 0.97 473 0 0.1730 0.0000 REMARK 3 43 3.7630 - 3.7340 0.94 509 0 0.1760 0.0000 REMARK 3 44 3.7340 - 3.7050 0.94 490 0 0.1640 0.0000 REMARK 3 45 3.7050 - 3.6770 0.94 500 0 0.1730 0.0000 REMARK 3 46 3.6770 - 3.6510 0.95 509 0 0.1740 0.0000 REMARK 3 47 3.6510 - 3.6250 0.95 460 0 0.1750 0.0000 REMARK 3 48 3.6250 - 3.5990 0.96 557 0 0.1960 0.0000 REMARK 3 49 3.5990 - 3.5750 0.93 516 0 0.1750 0.0000 REMARK 3 50 3.5750 - 3.5510 0.91 472 0 0.1870 0.0000 REMARK 3 51 3.5510 - 3.5270 0.92 468 0 0.1850 0.0000 REMARK 3 52 3.5270 - 3.5050 0.93 493 0 0.1890 0.0000 REMARK 3 53 3.5050 - 3.4820 0.96 518 0 0.2080 0.0000 REMARK 3 54 3.4820 - 3.4610 0.95 505 0 0.1810 0.0000 REMARK 3 55 3.4610 - 3.4400 0.95 501 0 0.1960 0.0000 REMARK 3 56 3.4400 - 3.4190 0.95 490 0 0.1810 0.0000 REMARK 3 57 3.4190 - 3.3990 0.95 511 0 0.1850 0.0000 REMARK 3 58 3.3990 - 3.3790 0.94 498 0 0.1980 0.0000 REMARK 3 59 3.3790 - 3.3600 0.96 551 0 0.1800 0.0000 REMARK 3 60 3.3600 - 3.3420 0.94 427 0 0.1940 0.0000 REMARK 3 61 3.3420 - 3.3230 0.96 539 0 0.2090 0.0000 REMARK 3 62 3.3230 - 3.3050 0.95 468 0 0.1970 0.0000 REMARK 3 63 3.3050 - 3.2880 0.98 535 0 0.1960 0.0000 REMARK 3 64 3.2880 - 3.2700 0.96 507 0 0.2150 0.0000 REMARK 3 65 3.2700 - 3.2530 0.96 552 0 0.2050 0.0000 REMARK 3 66 3.2530 - 3.2370 0.95 484 0 0.2060 0.0000 REMARK 3 67 3.2370 - 3.2210 0.95 428 0 0.2070 0.0000 REMARK 3 68 3.2210 - 3.2050 0.94 551 0 0.2170 0.0000 REMARK 3 69 3.2050 - 3.1900 0.94 533 0 0.2180 0.0000 REMARK 3 70 3.1900 - 3.1740 0.95 462 0 0.2250 0.0000 REMARK 3 71 3.1740 - 3.1590 0.94 531 0 0.1940 0.0000 REMARK 3 72 3.1590 - 3.1450 0.94 422 0 0.2000 0.0000 REMARK 3 73 3.1450 - 3.1300 0.95 574 0 0.2050 0.0000 REMARK 3 74 3.1300 - 3.1160 0.95 460 0 0.2150 0.0000 REMARK 3 75 3.1160 - 3.1020 0.94 513 0 0.2210 0.0000 REMARK 3 76 3.1020 - 3.0880 0.93 506 0 0.2220 0.0000 REMARK 3 77 3.0880 - 3.0750 0.96 488 0 0.2160 0.0000 REMARK 3 78 3.0750 - 3.0620 0.96 549 0 0.2180 0.0000 REMARK 3 79 3.0620 - 3.0490 0.95 507 0 0.2210 0.0000 REMARK 3 80 3.0490 - 3.0360 0.94 446 0 0.2350 0.0000 REMARK 3 81 3.0360 - 3.0240 0.95 518 0 0.2440 0.0000 REMARK 3 82 3.0240 - 3.0110 0.95 480 0 0.2200 0.0000 REMARK 3 83 3.0110 - 2.9990 0.96 546 0 0.2440 0.0000 REMARK 3 84 2.9990 - 2.9870 0.95 457 0 0.2320 0.0000 REMARK 3 85 2.9870 - 2.9750 0.96 540 0 0.2310 0.0000 REMARK 3 86 2.9750 - 2.9640 0.93 525 0 0.2440 0.0000 REMARK 3 87 2.9640 - 2.9520 0.94 486 0 0.2390 0.0000 REMARK 3 88 2.9520 - 2.9410 0.94 459 0 0.2550 0.0000 REMARK 3 89 2.9410 - 2.9300 0.95 448 0 0.2410 0.0000 REMARK 3 90 2.9300 - 2.9190 0.93 556 0 0.2610 0.0000 REMARK 3 91 2.9190 - 2.9080 0.96 519 0 0.2620 0.0000 REMARK 3 92 2.9080 - 2.8980 0.99 526 0 0.2710 0.0000 REMARK 3 93 2.8980 - 2.8880 0.94 483 0 0.2450 0.0000 REMARK 3 94 2.8880 - 2.8770 0.97 530 0 0.2380 0.0000 REMARK 3 95 2.8770 - 2.8670 0.95 469 0 0.2660 0.0000 REMARK 3 96 2.8670 - 2.8570 0.94 507 0 0.2540 0.0000 REMARK 3 97 2.8570 - 2.8470 0.93 444 0 0.2490 0.0000 REMARK 3 98 2.8470 - 2.8380 0.94 556 0 0.2570 0.0000 REMARK 3 99 2.8380 - 2.8280 0.93 492 0 0.2580 0.0000 REMARK 3 100 2.8280 - 2.8190 0.92 510 0 0.2720 0.0000 REMARK 3 101 2.8190 - 2.8090 0.97 543 0 0.2750 0.0000 REMARK 3 102 2.8090 - 2.8000 0.95 471 0 0.2430 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 50.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30100 REMARK 3 B22 (A**2) : 1.30100 REMARK 3 B33 (A**2) : -2.60200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 NULL REMARK 3 ANGLE : 0.660 NULL REMARK 3 CHIRALITY : 0.049 NULL REMARK 3 PLANARITY : 0.002 NULL REMARK 3 DIHEDRAL : 10.303 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 47.9636 -17.5831 -2.0273 REMARK 3 T TENSOR REMARK 3 T11: 0.4702 T22: 0.3886 REMARK 3 T33: 0.5510 T12: -0.0968 REMARK 3 T13: -0.0915 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.1558 L22: 2.3252 REMARK 3 L33: 1.7915 L12: -0.0481 REMARK 3 L13: 0.2308 L23: 0.1658 REMARK 3 S TENSOR REMARK 3 S11: 0.2850 S12: 0.1592 S13: -0.3481 REMARK 3 S21: 0.4787 S22: -0.2628 S23: 0.0850 REMARK 3 S31: 0.5758 S32: -0.0003 S33: -0.0105 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 21.4353 3.7177 -20.7099 REMARK 3 T TENSOR REMARK 3 T11: 0.3344 T22: 0.4676 REMARK 3 T33: 0.4375 T12: -0.0381 REMARK 3 T13: -0.1093 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 2.1264 L22: 1.0889 REMARK 3 L33: 1.4084 L12: -0.4559 REMARK 3 L13: -0.2200 L23: 0.1026 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: 0.0799 S13: 0.2013 REMARK 3 S21: 0.1104 S22: -0.0710 S23: -0.3659 REMARK 3 S31: -0.1029 S32: 0.0886 S33: -0.0450 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.378 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : 0.58500 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3BLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAK PHOSPHATE, 20% PEG 1000, 0.2M REMARK 280 NACL, 4MM TCEP, 0.1MM FLAVOPIRIDOL , PH 6.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 86.96100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.20696 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.39100 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 86.96100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 50.20696 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.39100 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 86.96100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 50.20696 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.39100 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 100.41391 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.78200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 100.41391 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.78200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 100.41391 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.78200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 ASP A 6 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 SER A 90 REMARK 465 PRO A 91 REMARK 465 TYR A 92 REMARK 465 ASN A 93 REMARK 465 ARG A 94 REMARK 465 CYS A 95 REMARK 465 LYS A 96 REMARK 465 GLY A 97 REMARK 465 LYS A 178 REMARK 465 ASN A 179 REMARK 465 SER A 180 REMARK 465 GLN A 181 REMARK 465 LYS A 269 REMARK 465 GLY A 270 REMARK 465 GLN A 271 REMARK 465 LYS A 272 REMARK 465 ARG A 273 REMARK 465 MET A 327 REMARK 465 LEU A 328 REMARK 465 SER A 329 REMARK 465 THR A 330 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 136.85 -172.28 REMARK 500 ARG A 86 -162.28 -128.71 REMARK 500 ASP A 149 47.06 -142.12 REMARK 500 LYS A 151 158.51 176.61 REMARK 500 ASP A 167 86.98 65.05 REMARK 500 SER A 175 -165.78 -170.31 REMARK 500 ARG A 184 50.35 -112.94 REMARK 500 VAL A 190 130.66 74.85 REMARK 500 ARG A 225 -14.27 65.68 REMARK 500 LEU A 244 -36.77 -131.99 REMARK 500 PRO A 250 -5.23 -57.93 REMARK 500 GLU A 260 49.31 -81.45 REMARK 500 LEU A 261 2.56 -150.24 REMARK 500 LEU A 296 49.03 -88.01 REMARK 500 GLN B 97 58.15 -117.26 REMARK 500 THR B 121 1.41 -65.23 REMARK 500 SER B 215 170.84 -56.72 REMARK 500 TYR B 224 30.63 -87.63 REMARK 500 VAL B 225 -45.74 -140.48 REMARK 500 ASN B 250 -0.91 71.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPB A 940 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BLH RELATED DB: PDB REMARK 900 CDK9/CYCLINT1 REMARK 900 RELATED ID: 3BLQ RELATED DB: PDB REMARK 900 CDK9/CYCLINT1/ATP DBREF 3BLR A 2 330 UNP P50750 CDK9_HUMAN 2 330 DBREF 3BLR B 2 259 UNP O60563 CCNT1_HUMAN 2 259 SEQADV 3BLR GLY A 0 UNP P50750 EXPRESSION TAG SEQADV 3BLR PRO A 1 UNP P50750 EXPRESSION TAG SEQADV 3BLR GLY B 0 UNP O60563 EXPRESSION TAG SEQADV 3BLR PRO B 1 UNP O60563 EXPRESSION TAG SEQADV 3BLR ARG B 77 UNP O60563 GLN 77 ENGINEERED MUTATION SEQADV 3BLR GLY B 96 UNP O60563 GLU 96 ENGINEERED MUTATION SEQADV 3BLR LEU B 241 UNP O60563 PHE 241 ENGINEERED MUTATION SEQRES 1 A 331 GLY PRO ALA LYS GLN TYR ASP SER VAL GLU CYS PRO PHE SEQRES 2 A 331 CYS ASP GLU VAL SER LYS TYR GLU LYS LEU ALA LYS ILE SEQRES 3 A 331 GLY GLN GLY THR PHE GLY GLU VAL PHE LYS ALA ARG HIS SEQRES 4 A 331 ARG LYS THR GLY GLN LYS VAL ALA LEU LYS LYS VAL LEU SEQRES 5 A 331 MET GLU ASN GLU LYS GLU GLY PHE PRO ILE THR ALA LEU SEQRES 6 A 331 ARG GLU ILE LYS ILE LEU GLN LEU LEU LYS HIS GLU ASN SEQRES 7 A 331 VAL VAL ASN LEU ILE GLU ILE CYS ARG THR LYS ALA SER SEQRES 8 A 331 PRO TYR ASN ARG CYS LYS GLY SER ILE TYR LEU VAL PHE SEQRES 9 A 331 ASP PHE CYS GLU HIS ASP LEU ALA GLY LEU LEU SER ASN SEQRES 10 A 331 VAL LEU VAL LYS PHE THR LEU SER GLU ILE LYS ARG VAL SEQRES 11 A 331 MET GLN MET LEU LEU ASN GLY LEU TYR TYR ILE HIS ARG SEQRES 12 A 331 ASN LYS ILE LEU HIS ARG ASP MET LYS ALA ALA ASN VAL SEQRES 13 A 331 LEU ILE THR ARG ASP GLY VAL LEU LYS LEU ALA ASP PHE SEQRES 14 A 331 GLY LEU ALA ARG ALA PHE SER LEU ALA LYS ASN SER GLN SEQRES 15 A 331 PRO ASN ARG TYR TPO ASN ARG VAL VAL THR LEU TRP TYR SEQRES 16 A 331 ARG PRO PRO GLU LEU LEU LEU GLY GLU ARG ASP TYR GLY SEQRES 17 A 331 PRO PRO ILE ASP LEU TRP GLY ALA GLY CYS ILE MET ALA SEQRES 18 A 331 GLU MET TRP THR ARG SER PRO ILE MET GLN GLY ASN THR SEQRES 19 A 331 GLU GLN HIS GLN LEU ALA LEU ILE SER GLN LEU CYS GLY SEQRES 20 A 331 SER ILE THR PRO GLU VAL TRP PRO ASN VAL ASP ASN TYR SEQRES 21 A 331 GLU LEU TYR GLU LYS LEU GLU LEU VAL LYS GLY GLN LYS SEQRES 22 A 331 ARG LYS VAL LYS ASP ARG LEU LYS ALA TYR VAL ARG ASP SEQRES 23 A 331 PRO TYR ALA LEU ASP LEU ILE ASP LYS LEU LEU VAL LEU SEQRES 24 A 331 ASP PRO ALA GLN ARG ILE ASP SER ASP ASP ALA LEU ASN SEQRES 25 A 331 HIS ASP PHE PHE TRP SER ASP PRO MET PRO SER ASP LEU SEQRES 26 A 331 LYS GLY MET LEU SER THR SEQRES 1 B 260 GLY PRO GLU GLY GLU ARG LYS ASN ASN ASN LYS ARG TRP SEQRES 2 B 260 TYR PHE THR ARG GLU GLN LEU GLU ASN SER PRO SER ARG SEQRES 3 B 260 ARG PHE GLY VAL ASP PRO ASP LYS GLU LEU SER TYR ARG SEQRES 4 B 260 GLN GLN ALA ALA ASN LEU LEU GLN ASP MET GLY GLN ARG SEQRES 5 B 260 LEU ASN VAL SER GLN LEU THR ILE ASN THR ALA ILE VAL SEQRES 6 B 260 TYR MET HIS ARG PHE TYR MET ILE GLN SER PHE THR ARG SEQRES 7 B 260 PHE PRO GLY ASN SER VAL ALA PRO ALA ALA LEU PHE LEU SEQRES 8 B 260 ALA ALA LYS VAL GLU GLY GLN PRO LYS LYS LEU GLU HIS SEQRES 9 B 260 VAL ILE LYS VAL ALA HIS THR CYS LEU HIS PRO GLN GLU SEQRES 10 B 260 SER LEU PRO ASP THR ARG SER GLU ALA TYR LEU GLN GLN SEQRES 11 B 260 VAL GLN ASP LEU VAL ILE LEU GLU SER ILE ILE LEU GLN SEQRES 12 B 260 THR LEU GLY PHE GLU LEU THR ILE ASP HIS PRO HIS THR SEQRES 13 B 260 HIS VAL VAL LYS CYS THR GLN LEU VAL ARG ALA SER LYS SEQRES 14 B 260 ASP LEU ALA GLN THR SER TYR PHE MET ALA THR ASN SER SEQRES 15 B 260 LEU HIS LEU THR THR PHE SER LEU GLN TYR THR PRO PRO SEQRES 16 B 260 VAL VAL ALA CYS VAL CYS ILE HIS LEU ALA CYS LYS TRP SEQRES 17 B 260 SER ASN TRP GLU ILE PRO VAL SER THR ASP GLY LYS HIS SEQRES 18 B 260 TRP TRP GLU TYR VAL ASP ALA THR VAL THR LEU GLU LEU SEQRES 19 B 260 LEU ASP GLU LEU THR HIS GLU LEU LEU GLN ILE LEU GLU SEQRES 20 B 260 LYS THR PRO ASN ARG LEU LYS ARG ILE TRP ASN TRP ARG MODRES 3BLR TPO A 186 THR PHOSPHOTHREONINE HET TPO A 186 11 HET PO4 A 331 5 HET CPB A 940 28 HET PO4 B 260 5 HET PO4 B 261 5 HETNAM TPO PHOSPHOTHREONINE HETNAM PO4 PHOSPHATE ION HETNAM CPB 2-(2-CHLORO-PHENYL)-5,7-DIHYDROXY-8-(3-HYDROXY-1- HETNAM 2 CPB METHYL-PIPERIDIN-4-YL)-4H-BENZOPYRAN-4-ONE HETSYN TPO PHOSPHONOTHREONINE HETSYN CPB FLAVOPIRIDOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 PO4 3(O4 P 3-) FORMUL 4 CPB C21 H20 CL N O5 FORMUL 7 HOH *20(H2 O) HELIX 1 1 GLU A 15 SER A 17 5 3 HELIX 2 2 PRO A 60 LEU A 73 1 14 HELIX 3 3 LEU A 110 ASN A 116 1 7 HELIX 4 4 THR A 122 ASN A 143 1 22 HELIX 5 5 LYS A 151 ALA A 153 5 3 HELIX 6 6 THR A 191 ARG A 195 5 5 HELIX 7 7 PRO A 196 LEU A 201 1 6 HELIX 8 8 PRO A 208 ARG A 225 1 18 HELIX 9 9 THR A 233 GLY A 246 1 14 HELIX 10 10 ASN A 255 TYR A 259 5 5 HELIX 11 11 LYS A 274 LYS A 280 1 7 HELIX 12 12 ASP A 285 LEU A 296 1 12 HELIX 13 13 ASP A 299 ARG A 303 5 5 HELIX 14 14 ASP A 305 ASN A 311 1 7 HELIX 15 15 HIS A 312 TRP A 316 5 5 HELIX 16 16 THR B 15 ASN B 21 1 7 HELIX 17 17 SER B 24 GLY B 28 5 5 HELIX 18 18 ASP B 30 LEU B 52 1 23 HELIX 19 19 SER B 55 TYR B 70 1 16 HELIX 20 20 PRO B 79 GLU B 95 1 17 HELIX 21 21 LYS B 100 HIS B 113 1 14 HELIX 22 22 SER B 123 LEU B 144 1 22 HELIX 23 23 HIS B 152 THR B 161 5 10 HELIX 24 24 SER B 167 THR B 185 1 19 HELIX 25 25 THR B 186 GLN B 190 5 5 HELIX 26 26 THR B 192 ASN B 209 1 18 HELIX 27 27 HIS B 220 VAL B 225 5 6 HELIX 28 28 THR B 230 THR B 248 1 19 HELIX 29 29 ASN B 250 ILE B 255 1 6 SHEET 1 A 5 TYR A 19 GLY A 26 0 SHEET 2 A 5 VAL A 33 HIS A 38 -1 O LYS A 35 N ALA A 23 SHEET 3 A 5 LYS A 44 LYS A 49 -1 O LEU A 47 N PHE A 34 SHEET 4 A 5 TYR A 100 ASP A 104 -1 O PHE A 103 N ALA A 46 SHEET 5 A 5 LEU A 81 CYS A 85 -1 N ILE A 82 O VAL A 102 SHEET 1 B 3 HIS A 108 ASP A 109 0 SHEET 2 B 3 VAL A 155 ILE A 157 -1 O ILE A 157 N HIS A 108 SHEET 3 B 3 LEU A 163 LEU A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 C 2 ILE A 145 LEU A 146 0 SHEET 2 C 2 ARG A 172 ALA A 173 -1 O ARG A 172 N LEU A 146 LINK C TYR A 185 N TPO A 186 1555 1555 1.33 LINK C TPO A 186 N ASN A 187 1555 1555 1.34 CISPEP 1 LYS A 264 LEU A 265 0 2.65 CISPEP 2 ASP A 318 PRO A 319 0 -2.82 SITE 1 AC1 3 LYS B 99 LYS B 100 HIS B 103 SITE 1 AC2 4 HIS A 141 ASP A 305 SER A 306 ASP A 307 SITE 1 AC3 2 ASN B 250 ARG B 254 SITE 1 AC4 11 ILE A 25 PHE A 30 ALA A 46 LYS A 48 SITE 2 AC4 11 PHE A 103 CYS A 106 GLU A 107 ALA A 153 SITE 3 AC4 11 ASN A 154 LEU A 156 ASP A 167 CRYST1 173.922 173.922 97.173 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005750 0.003320 0.000000 0.00000 SCALE2 0.000000 0.006639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010291 0.00000