HEADER ACTIN-BINDING PROTEIN 01-JUN-11 2YLF TITLE CRYSTAL STRUCTURE OF THE HUMAN SPIR-1 KIND DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SPIRE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN SPIR-1 DOMAIN (KIND), RESIDUES 36-236; COMPND 5 SYNONYM: HUMAN SPIR-1 KIND, SPIR-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS ACTIN-BINDING PROTEIN, ACTIN POLYMERIZATION, SPIR, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,M.PECHLIVANIS,C.VONRHEIN,E.KERKHOFF REVDAT 4 23-AUG-17 2YLF 1 REMARK REVDAT 3 15-AUG-12 2YLF 1 JRNL REMARK VERSN REVDAT 2 06-JUL-11 2YLF 1 AUTHOR REVDAT 1 08-JUN-11 2YLF 0 JRNL AUTH K.ZETH,M.PECHLIVANIS,A.SAMOL,S.PLEISER,C.VONRHEIN,E.KERKHOFF JRNL TITL MOLECULAR BASIS OF ACTIN NUCLEATION FACTOR COOPERATIVITY: JRNL TITL 2 CRYSTAL STRUCTURE OF THE SPIR-1 KINASE NON-CATALYTIC C-LOBE JRNL TITL 3 DOMAIN (KIND)FORMIN-2 FORMIN SPIR INTERACTION MOTIF (FSI) JRNL TITL 4 COMPLEX. JRNL REF J.BIOL.CHEM. V. 286 30732 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21705804 JRNL DOI 10.1074/JBC.M111.257782 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : -0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1333 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1804 ; 1.807 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 163 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;36.578 ;22.836 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 238 ;15.133 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1012 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 815 ; 1.297 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1311 ; 2.292 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 518 ; 3.253 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 491 ; 5.238 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): -28.9336 -3.0120 -8.5915 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.0168 REMARK 3 T33: 0.0608 T12: 0.0279 REMARK 3 T13: -0.0001 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5966 L22: 0.7098 REMARK 3 L33: 0.5898 L12: -0.5764 REMARK 3 L13: 0.1408 L23: -0.1597 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.0396 S13: 0.0467 REMARK 3 S21: -0.0066 S22: 0.0077 S23: -0.0530 REMARK 3 S31: -0.0358 S32: -0.0170 S33: -0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YLE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.53533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.26767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.26767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.53533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 SER A 9 REMARK 465 TYR A 10 REMARK 465 TYR A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 ASP A 18 REMARK 465 TYR A 19 REMARK 465 ASP A 20 REMARK 465 ILE A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 LEU A 27 REMARK 465 TYR A 28 REMARK 465 PHE A 29 REMARK 465 GLN A 30 REMARK 465 GLY A 31 REMARK 465 ALA A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 ALA A 101 REMARK 465 ALA A 102 REMARK 465 ASP A 103 REMARK 465 ASP A 104 REMARK 465 ALA A 105 REMARK 465 GLY A 106 REMARK 465 GLU A 107 REMARK 465 PRO A 108 REMARK 465 PRO A 109 REMARK 465 PRO A 110 REMARK 465 VAL A 111 REMARK 465 ALA A 112 REMARK 465 GLY A 113 REMARK 465 LYS A 114 REMARK 465 LEU A 115 REMARK 465 GLU A 165 REMARK 465 ALA A 166 REMARK 465 ASP A 167 REMARK 465 GLY A 168 REMARK 465 SER A 169 REMARK 465 ASN A 170 REMARK 465 ASP A 171 REMARK 465 GLU A 172 REMARK 465 GLY A 173 REMARK 465 TYR A 174 REMARK 465 GLU A 175 REMARK 465 ALA A 176 REMARK 465 ALA A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 180 REMARK 465 LEU A 181 REMARK 465 GLY A 182 REMARK 465 ASP A 183 REMARK 465 GLU A 184 REMARK 465 ASP A 185 REMARK 465 GLU A 186 REMARK 465 THR A 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2003 O HOH A 2005 2.10 REMARK 500 O HOH A 2004 O HOH A 2008 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -163.85 -167.58 REMARK 500 GLU A 145 36.02 -97.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2059 DISTANCE = 6.03 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YLE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN SPIR-1 KIND FSI DOMAIN IN COMPLEX REMARK 900 WITH THE FSI PEPTIDE DBREF 2YLF A 36 236 UNP Q08AE8 SPIR1_HUMAN 36 236 SEQADV 2YLF MET A 8 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF SER A 9 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF TYR A 10 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF TYR A 11 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF HIS A 12 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF HIS A 13 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF HIS A 14 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF HIS A 15 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF HIS A 16 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF HIS A 17 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF ASP A 18 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF TYR A 19 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF ASP A 20 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF ILE A 21 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF PRO A 22 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF THR A 23 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF THR A 24 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF GLU A 25 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF ASN A 26 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF LEU A 27 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF TYR A 28 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF PHE A 29 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF GLN A 30 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF GLY A 31 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF ALA A 32 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF MET A 33 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF GLY A 34 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLF SER A 35 UNP Q08AE8 EXPRESSION TAG SEQRES 1 A 229 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 229 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 229 GLY SER SER ARG ASP ALA LEU SER LEU GLU GLU ILE LEU SEQRES 4 A 229 ARG LEU TYR ASN GLN PRO ILE ASN GLU GLU GLN ALA TRP SEQRES 5 A 229 ALA VAL CYS TYR GLN CYS CYS GLY SER LEU ARG ALA ALA SEQRES 6 A 229 ALA ARG ARG ARG GLN PRO ARG HIS ARG VAL ARG SER ALA SEQRES 7 A 229 ALA GLN ILE ARG VAL TRP ARG ASP GLY ALA VAL THR LEU SEQRES 8 A 229 ALA PRO ALA ALA ASP ASP ALA GLY GLU PRO PRO PRO VAL SEQRES 9 A 229 ALA GLY LYS LEU GLY TYR SER GLN CYS MET GLU THR GLU SEQRES 10 A 229 VAL ILE GLU SER LEU GLY ILE ILE ILE TYR LYS ALA LEU SEQRES 11 A 229 ASP TYR GLY LEU LYS GLU ASN GLU GLU ARG GLU LEU SER SEQRES 12 A 229 PRO PRO LEU GLU GLN LEU ILE ASP HIS MET ALA ASN THR SEQRES 13 A 229 VAL GLU ALA ASP GLY SER ASN ASP GLU GLY TYR GLU ALA SEQRES 14 A 229 ALA GLU GLU GLY LEU GLY ASP GLU ASP GLU LYS ARG LYS SEQRES 15 A 229 ILE SER ALA ILE ARG SER TYR ARG ASP VAL MET LYS LEU SEQRES 16 A 229 CYS ALA ALA HIS LEU PRO THR GLU SER ASP ALA PRO ASN SEQRES 17 A 229 HIS TYR GLN ALA VAL CYS ARG ALA LEU PHE ALA GLU THR SEQRES 18 A 229 MET GLU LEU HIS THR PHE LEU THR FORMUL 2 HOH *106(H2 O) HELIX 1 1 LEU A 42 ASN A 50 1 9 HELIX 2 2 ASN A 54 ARG A 75 1 22 HELIX 3 3 SER A 84 ALA A 86 5 3 HELIX 4 4 MET A 121 TYR A 139 1 19 HELIX 5 5 LYS A 142 GLU A 146 5 5 HELIX 6 6 SER A 150 ASN A 162 1 13 HELIX 7 7 SER A 195 HIS A 206 1 12 HELIX 8 8 THR A 209 SER A 211 5 3 HELIX 9 9 ASP A 212 THR A 233 1 22 SHEET 1 AA 3 ALA A 39 SER A 41 0 SHEET 2 AA 3 ILE A 88 TRP A 91 -1 O VAL A 90 N LEU A 40 SHEET 3 AA 3 VAL A 96 LEU A 98 -1 O THR A 97 N ARG A 89 CRYST1 65.914 65.914 78.803 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015171 0.008759 0.000000 0.00000 SCALE2 0.000000 0.017518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012690 0.00000