HEADER TRANSFERASE 21-OCT-08 2W1Z TITLE ROP2 FROM TOXOPLASMA GONDII: A VIRULENCE FACTOR WITH A TITLE 2 PROTEIN-KINASE FOLD AND NO ENZYMATIC ACTIVITY. CAVEAT 2W1Z HIS A 463 C-ALPHA IS PLANAR CAVEAT 2 2W1Z THR B 451 CBETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROP2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN-KINASE DOMAIN, RESIDUES 195-561; COMPND 5 EC: 2.7.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 383379; SOURCE 4 STRAIN: RH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE31; SOURCE 9 OTHER_DETAILS: STRAIN RH KEYWDS INACTIVITY, PROTEIN-KINASE, MEMBRANE-ATTACHMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.LABESSE,M.GELIN,Y.BESSIN,M.LEBRUN,S.T.AROLD,J.-F.DUBREMETZ REVDAT 3 21-SEP-11 2W1Z 1 AUTHOR JRNL REMARK ATOM REVDAT 2 13-JUL-11 2W1Z 1 VERSN REVDAT 1 09-DEC-08 2W1Z 0 JRNL AUTH G.LABESSE,M.GELIN,Y.BESSIN,M.LEBRUN,J.PAPOIN, JRNL AUTH 2 R.CERDAN,S.T.AROLD,J.-F.DUBREMETZ JRNL TITL ROP2 FROM TOXOPLASMA GONDII: A VIRULENCE FACTOR JRNL TITL 2 WITH A PROTEIN-KINASE FOLD AND NO ENZYMATIC JRNL TITL 3 ACTIVITY. JRNL REF STRUCTURE V. 17 139 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19141290 JRNL DOI 10.1016/J.STR.2008.11.005 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0062 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 82.29 REMARK 3 NUMBER OF REFLECTIONS : 51992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.19577 REMARK 3 R VALUE (WORKING SET) : 0.19339 REMARK 3 FREE R VALUE : 0.24050 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.970 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.021 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2806 REMARK 3 BIN R VALUE (WORKING SET) : 0.319 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.154 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.94 REMARK 3 B22 (A**2) : 0.73 REMARK 3 B33 (A**2) : -0.11 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -1.85 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED (A): 6042 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4237 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED (DEGREES): 8198 ; 1.290 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10217 ; 1.985 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 707 ; 6.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;34.385 ;22.389 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1055 ;16.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 76 ;18.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 897 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED (A): 6621 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1309 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED (A): 1257 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4403 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED (A): 2814 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3040 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED (A): 374 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW REFINED (A): 10 ; 0.093 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 103 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED (A): 31 ; 0.182 ; 0.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED (A**2): 3561 ; 0.490 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED (A**2): 5786 ; 0.861 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED (A**2): 2481 ; 1.143 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED (A**2): 2412 ; 1.744 ; 4.500 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 194 A 364 6 REMARK 3 1 B 194 B 364 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2412 ; 0.61 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 2412 ; 0.61 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2412 ; 1.43 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 2412 ; 1.43 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9740 40.4840 32.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: -0.0082 REMARK 3 T33: -0.2398 T12: 0.0061 REMARK 3 T13: 0.0630 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.5736 L22: 3.3944 REMARK 3 L33: 2.5354 L12: -0.5337 REMARK 3 L13: 0.0524 L23: -1.3776 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: 0.3593 S13: 0.0534 REMARK 3 S21: -0.1498 S22: 0.1641 S23: 0.1019 REMARK 3 S31: 0.0356 S32: -0.3586 S33: -0.0783 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 220 REMARK 3 RESIDUE RANGE : A 361 A 556 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1870 30.2200 53.7220 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: -0.1910 REMARK 3 T33: -0.1753 T12: -0.0154 REMARK 3 T13: 0.1336 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.9282 L22: 1.2774 REMARK 3 L33: 1.5484 L12: -0.2386 REMARK 3 L13: -0.6391 L23: 0.3642 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: -0.0727 S13: -0.0647 REMARK 3 S21: -0.0553 S22: -0.0111 S23: -0.0410 REMARK 3 S31: -0.0414 S32: -0.0696 S33: -0.0319 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 223 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7670 13.2130 13.1020 REMARK 3 T TENSOR REMARK 3 T11: -0.0073 T22: -0.0370 REMARK 3 T33: -0.2537 T12: -0.0503 REMARK 3 T13: 0.0896 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.0114 L22: 3.2849 REMARK 3 L33: 1.4615 L12: 0.8100 REMARK 3 L13: 0.2094 L23: 0.3709 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: -0.4212 S13: 0.0973 REMARK 3 S21: 0.1884 S22: -0.1136 S23: -0.1637 REMARK 3 S31: -0.0661 S32: 0.1619 S33: 0.0399 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 196 B 220 REMARK 3 RESIDUE RANGE : B 361 B 557 REMARK 3 ORIGIN FOR THE GROUP (A): -36.4490 2.7420 -6.0360 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: -0.1879 REMARK 3 T33: -0.1738 T12: 0.0121 REMARK 3 T13: 0.1341 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.4265 L22: 1.3210 REMARK 3 L33: 1.3682 L12: 0.3930 REMARK 3 L13: -0.6662 L23: -0.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: 0.0381 S13: -0.0229 REMARK 3 S21: -0.0038 S22: -0.0189 S23: 0.0336 REMARK 3 S31: -0.0358 S32: 0.0480 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 B 2296 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3320 17.1680 21.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.2533 T22: -0.0133 REMARK 3 T33: -0.0139 T12: -0.0189 REMARK 3 T13: 0.1742 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.2007 L22: 0.2017 REMARK 3 L33: 0.1854 L12: 0.0768 REMARK 3 L13: 0.1681 L23: 0.1519 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0123 S13: 0.0064 REMARK 3 S21: -0.0174 S22: -0.0164 S23: -0.0019 REMARK 3 S31: -0.0203 S32: -0.0207 S33: 0.0189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. DISORDERED REGIONS WERE NOT MODELED REMARK 4 REMARK 4 2W1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-08. REMARK 100 THE PDBE ID CODE IS EBI-37858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976255 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.97 REMARK 200 RESOLUTION RANGE LOW (A) : 73.32 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.1 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.7 REMARK 200 DATA REDUNDANCY : 2.5 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.5 REMARK 200 R MERGE FOR SHELL (I) : 0.47 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.4 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 320 MM AMMONIUM CITRATE, PH 5.6, REMARK 280 2% MPD, 15% W/V POLYETHYLENE GLYCOL 2000 MME REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.80450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.67400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.80450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.67400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 344 REMARK 465 GLU A 345 REMARK 465 MET A 456 REMARK 465 LEU A 457 REMARK 465 PRO A 458 REMARK 465 TYR A 459 REMARK 465 ARG A 460 REMARK 465 GLN A 461 REMARK 465 HIS A 462 REMARK 465 ASP A 557 REMARK 465 GLY A 558 REMARK 465 GLU A 559 REMARK 465 PRO A 560 REMARK 465 ALA A 561 REMARK 465 MET B 456 REMARK 465 LEU B 457 REMARK 465 PRO B 458 REMARK 465 TYR B 459 REMARK 465 ARG B 460 REMARK 465 GLN B 461 REMARK 465 GLY B 558 REMARK 465 GLU B 559 REMARK 465 PRO B 560 REMARK 465 ALA B 561 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 455 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2129 O HOH B 2265 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 463 CB - CA - C ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 233 -86.91 -127.95 REMARK 500 ALA A 408 -0.09 73.22 REMARK 500 ASP A 409 40.94 -143.43 REMARK 500 LEU B 233 -86.96 -123.28 REMARK 500 ASP B 344 -107.74 66.06 REMARK 500 ASP B 409 41.37 -147.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 276 GLU A 277 -54.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS A 463 -9.9 L D EXPECTING SP3 REMARK 500 THR B 451 -3.0 R S CBETA WRONG HAND REMARK 500 ASP B 557 21.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA", "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1558 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1559 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1557 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1560 DBREF 2W1Z A 194 194 PDB 2W1Z 2W1Z 194 194 DBREF 2W1Z A 195 561 UNP Q27007 Q27007_TOXGO 195 561 DBREF 2W1Z B 194 194 PDB 2W1Z 2W1Z 194 194 DBREF 2W1Z B 195 561 UNP Q27007 Q27007_TOXGO 195 561 SEQRES 1 A 368 HIS THR ASP PRO GLY ASP VAL VAL ILE GLU GLU LEU PHE SEQRES 2 A 368 ASN ARG ILE PRO GLU THR SER VAL TRP ASN GLU ASN GLU SEQRES 3 A 368 ARG VAL LEU SER ASN ALA ASN HIS LEU VAL SER THR ALA SEQRES 4 A 368 LEU TRP ARG ASN GLU GLN SER PHE ARG VAL GLU SER GLU SEQRES 5 A 368 LEU GLY GLU ARG PRO ARG THR LEU VAL ARG GLY PRO VAL SEQRES 6 A 368 LEU ARG ASP ASP GLY SER TYR ILE CYS LEU GLU ALA THR SEQRES 7 A 368 ASP GLN GLU THR GLY GLU PRO LEU GLU VAL HIS VAL PRO SEQRES 8 A 368 TYR PHE THR GLU ARG PRO PRO SER ASN ALA ILE LYS GLN SEQRES 9 A 368 LEU SER GLU GLN VAL LEU ARG LEU ARG LEU LEU ARG GLY SEQRES 10 A 368 ILE LYS ASN GLN ARG GLN ALA LYS ALA TYR LEU ARG PHE SEQRES 11 A 368 ILE PHE PRO ILE ASP LEU VAL LYS ASP PRO LYS LYS ARG SEQRES 12 A 368 LYS MET ILE ARG VAL ARG LEU ASP GLU ARG ASP MET TRP SEQRES 13 A 368 VAL LEU SER ARG PHE PHE LEU TYR PRO ARG MET GLN SER SEQRES 14 A 368 ASN LEU HIS ILE LEU GLY ASP VAL LEU LEU SER HIS SER SEQRES 15 A 368 SER THR HIS LYS SER LEU VAL HIS HIS ALA ARG LEU GLN SEQRES 16 A 368 LEU THR LEU GLN LEU ILE ARG LEU ALA ALA SER LEU GLN SEQRES 17 A 368 HIS TYR GLY LEU VAL HIS ALA ASP PHE GLN VAL ARG ASN SEQRES 18 A 368 ILE LEU LEU ASP GLN ARG GLY GLY VAL PHE LEU THR GLY SEQRES 19 A 368 PHE GLU HIS LEU VAL ARG ASP GLY ALA SER ALA VAL SER SEQRES 20 A 368 PRO ILE GLY ARG GLY PHE ALA PRO PRO GLU THR THR ALA SEQRES 21 A 368 GLU ARG MET LEU PRO TYR ARG GLN HIS HIS PRO THR LEU SEQRES 22 A 368 MET THR PHE PRO PHE ASP THR TRP THR LEU GLY LEU ALA SEQRES 23 A 368 ILE TYR TRP ILE TRP CYS ALA ASP LEU PRO ASN THR GLU SEQRES 24 A 368 ASP ALA GLU LEU GLY GLY ILE GLU TRP ILE TYR ARG ARG SEQRES 25 A 368 CYS LYS ASN ILE PRO GLN PRO VAL ARG ALA LEU LEU GLU SEQRES 26 A 368 GLY PHE LEU ARG TYR SER LYS GLU ASP ARG LEU LEU PRO SEQRES 27 A 368 LEU GLN ALA MET GLU THR SER GLU TYR GLU GLN LEU ARG SEQRES 28 A 368 THR GLU LEU SER ALA VAL LEU PRO LEU TYR GLN THR ASP SEQRES 29 A 368 GLY GLU PRO ALA SEQRES 1 B 368 HIS THR ASP PRO GLY ASP VAL VAL ILE GLU GLU LEU PHE SEQRES 2 B 368 ASN ARG ILE PRO GLU THR SER VAL TRP ASN GLU ASN GLU SEQRES 3 B 368 ARG VAL LEU SER ASN ALA ASN HIS LEU VAL SER THR ALA SEQRES 4 B 368 LEU TRP ARG ASN GLU GLN SER PHE ARG VAL GLU SER GLU SEQRES 5 B 368 LEU GLY GLU ARG PRO ARG THR LEU VAL ARG GLY PRO VAL SEQRES 6 B 368 LEU ARG ASP ASP GLY SER TYR ILE CYS LEU GLU ALA THR SEQRES 7 B 368 ASP GLN GLU THR GLY GLU PRO LEU GLU VAL HIS VAL PRO SEQRES 8 B 368 TYR PHE THR GLU ARG PRO PRO SER ASN ALA ILE LYS GLN SEQRES 9 B 368 LEU SER GLU GLN VAL LEU ARG LEU ARG LEU LEU ARG GLY SEQRES 10 B 368 ILE LYS ASN GLN ARG GLN ALA LYS ALA TYR LEU ARG PHE SEQRES 11 B 368 ILE PHE PRO ILE ASP LEU VAL LYS ASP PRO LYS LYS ARG SEQRES 12 B 368 LYS MET ILE ARG VAL ARG LEU ASP GLU ARG ASP MET TRP SEQRES 13 B 368 VAL LEU SER ARG PHE PHE LEU TYR PRO ARG MET GLN SER SEQRES 14 B 368 ASN LEU HIS ILE LEU GLY ASP VAL LEU LEU SER HIS SER SEQRES 15 B 368 SER THR HIS LYS SER LEU VAL HIS HIS ALA ARG LEU GLN SEQRES 16 B 368 LEU THR LEU GLN LEU ILE ARG LEU ALA ALA SER LEU GLN SEQRES 17 B 368 HIS TYR GLY LEU VAL HIS ALA ASP PHE GLN VAL ARG ASN SEQRES 18 B 368 ILE LEU LEU ASP GLN ARG GLY GLY VAL PHE LEU THR GLY SEQRES 19 B 368 PHE GLU HIS LEU VAL ARG ASP GLY ALA SER ALA VAL SER SEQRES 20 B 368 PRO ILE GLY ARG GLY PHE ALA PRO PRO GLU THR THR ALA SEQRES 21 B 368 GLU ARG MET LEU PRO TYR ARG GLN HIS HIS PRO THR LEU SEQRES 22 B 368 MET THR PHE PRO PHE ASP THR TRP THR LEU GLY LEU ALA SEQRES 23 B 368 ILE TYR TRP ILE TRP CYS ALA ASP LEU PRO ASN THR GLU SEQRES 24 B 368 ASP ALA GLU LEU GLY GLY ILE GLU TRP ILE TYR ARG ARG SEQRES 25 B 368 CYS LYS ASN ILE PRO GLN PRO VAL ARG ALA LEU LEU GLU SEQRES 26 B 368 GLY PHE LEU ARG TYR SER LYS GLU ASP ARG LEU LEU PRO SEQRES 27 B 368 LEU GLN ALA MET GLU THR SER GLU TYR GLU GLN LEU ARG SEQRES 28 B 368 THR GLU LEU SER ALA VAL LEU PRO LEU TYR GLN THR ASP SEQRES 29 B 368 GLY GLU PRO ALA HET SO4 B1558 5 HET SO4 B1559 5 HET SO4 A1557 5 HET SO4 B1560 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 HOH *524(H2 O) HELIX 1 1 GLY A 198 ILE A 209 1 12 HELIX 2 2 PRO A 210 VAL A 214 5 5 HELIX 3 3 ASN A 218 LEU A 233 1 16 HELIX 4 4 ASN A 293 SER A 299 1 7 HELIX 5 5 SER A 299 ARG A 304 1 6 HELIX 6 6 LEU A 305 LEU A 308 5 4 HELIX 7 7 ASN A 313 ARG A 322 1 10 HELIX 8 8 LEU A 364 SER A 375 1 12 HELIX 9 9 HIS A 378 TYR A 403 1 26 HELIX 10 10 PRO A 448 ARG A 455 1 8 HELIX 11 11 THR A 468 ALA A 486 1 19 HELIX 12 12 ASN A 490 GLY A 497 5 8 HELIX 13 13 ILE A 499 ARG A 504 1 6 HELIX 14 14 PRO A 510 LEU A 521 1 12 HELIX 15 15 SER A 524 ARG A 528 5 5 HELIX 16 16 LEU A 530 MET A 535 1 6 HELIX 17 17 THR A 537 LEU A 551 1 15 HELIX 18 18 PRO A 552 GLN A 555 5 4 HELIX 19 19 GLY B 198 ILE B 209 1 12 HELIX 20 20 PRO B 210 VAL B 214 5 5 HELIX 21 21 ASN B 218 LEU B 233 1 16 HELIX 22 22 ASN B 293 SER B 299 1 7 HELIX 23 23 SER B 299 ARG B 304 1 6 HELIX 24 24 LEU B 305 LEU B 308 5 4 HELIX 25 25 ASN B 313 ARG B 322 1 10 HELIX 26 26 LEU B 364 SER B 375 1 12 HELIX 27 27 HIS B 378 TYR B 403 1 26 HELIX 28 28 GLY B 427 LEU B 431 5 5 HELIX 29 29 PRO B 448 GLU B 454 1 7 HELIX 30 30 THR B 468 ALA B 486 1 19 HELIX 31 31 ASN B 490 GLY B 497 5 8 HELIX 32 32 ILE B 499 ARG B 504 1 6 HELIX 33 33 PRO B 510 LEU B 521 1 12 HELIX 34 34 SER B 524 ARG B 528 5 5 HELIX 35 35 LEU B 530 MET B 535 1 6 HELIX 36 36 THR B 537 LEU B 551 1 15 HELIX 37 37 PRO B 552 GLN B 555 5 4 SHEET 1 AA20 SER A 239 SER A 244 0 SHEET 2 AA20 ARG A 251 ASP A 261 -1 O ARG A 251 N VAL A 242 SHEET 3 AA20 TYR A 265 ASP A 272 -1 O CYS A 267 N LEU A 259 SHEET 4 AA20 PRO A 278 PHE A 286 -1 O LEU A 279 N ALA A 270 SHEET 5 AA20 ASP A 347 LEU A 351 -1 O TRP A 349 N PHE A 286 SHEET 6 AA20 MET A 338 ARG A 342 -1 O ILE A 339 N VAL A 350 SHEET 7 AA20 ARG A 251 ASP A 261 SHEET 8 AA20 SER A 239 SER A 244 -1 O PHE A 240 N LEU A 253 SHEET 9 AA20 TYR A 265 ASP A 272 SHEET 10 AA20 ARG A 251 ASP A 261 -1 O VAL A 254 N THR A 271 SHEET 11 AA20 PRO A 278 PHE A 286 SHEET 12 AA20 TYR A 265 ASP A 272 -1 O ILE A 266 N VAL A 283 SHEET 13 AA20 ASP A 328 LYS A 331 SHEET 14 AA20 SER A 239 SER A 244 -1 O GLU A 243 N LYS A 331 SHEET 15 AA20 MET A 338 ARG A 342 SHEET 16 AA20 ASP A 347 LEU A 351 -1 O MET A 348 N VAL A 341 SHEET 17 AA20 ASP A 347 LEU A 351 SHEET 18 AA20 PRO A 278 PHE A 286 -1 O PRO A 284 N LEU A 351 SHEET 19 AA20 ARG A 353 TYR A 357 -1 O PHE A 355 N HIS A 282 SHEET 20 AA20 PRO A 278 PHE A 286 8 O GLU A 280 N TYR A 357 SHEET 1 AB 3 SER A 362 ASN A 363 0 SHEET 2 AB 3 ILE A 415 LEU A 417 -1 N LEU A 417 O SER A 362 SHEET 3 AB 3 VAL A 423 LEU A 425 -1 O PHE A 424 N LEU A 416 SHEET 1 AC 2 LEU A 405 VAL A 406 0 SHEET 2 AC 2 VAL A 432 ARG A 433 -1 O VAL A 432 N VAL A 406 SHEET 1 AD 2 ALA A 436 ALA A 438 0 SHEET 2 AD 2 THR A 465 MET A 467 -1 O THR A 465 N ALA A 438 SHEET 1 BA16 SER B 239 SER B 244 0 SHEET 2 BA16 ARG B 251 ASP B 261 -1 O ARG B 251 N VAL B 242 SHEET 3 BA16 ARG B 251 ASP B 261 SHEET 4 BA16 SER B 239 SER B 244 -1 O PHE B 240 N LEU B 253 SHEET 5 BA16 TYR B 265 ASP B 272 SHEET 6 BA16 ARG B 251 ASP B 261 -1 O VAL B 254 N THR B 271 SHEET 7 BA16 PRO B 278 PHE B 286 SHEET 8 BA16 TYR B 265 ASP B 272 -1 O ILE B 266 N VAL B 283 SHEET 9 BA16 ASP B 328 LYS B 331 SHEET 10 BA16 SER B 239 SER B 244 -1 O GLU B 243 N LYS B 331 SHEET 11 BA16 MET B 338 LEU B 343 SHEET 12 BA16 ARG B 346 LEU B 351 -1 O ARG B 346 N LEU B 343 SHEET 13 BA16 ARG B 346 LEU B 351 SHEET 14 BA16 PRO B 278 PHE B 286 -1 O PRO B 284 N LEU B 351 SHEET 15 BA16 ARG B 353 TYR B 357 -1 O PHE B 355 N HIS B 282 SHEET 16 BA16 PRO B 278 PHE B 286 -1 O GLU B 280 N TYR B 357 SHEET 1 BB 3 SER B 362 ASN B 363 0 SHEET 2 BB 3 ILE B 415 LEU B 417 -1 N LEU B 417 O SER B 362 SHEET 3 BB 3 VAL B 423 LEU B 425 -1 O PHE B 424 N LEU B 416 SHEET 1 BC 2 LEU B 405 VAL B 406 0 SHEET 2 BC 2 VAL B 432 ARG B 433 -1 O VAL B 432 N VAL B 406 SHEET 1 BD 2 ALA B 436 ALA B 438 0 SHEET 2 BD 2 THR B 465 MET B 467 -1 O THR B 465 N ALA B 438 SSBOND 1 CYS A 485 CYS A 506 1555 1555 2.02 SSBOND 2 CYS B 485 CYS B 506 1555 1555 2.00 SITE 1 AC1 9 LYS A 379 SER A 380 ARG B 208 HIS B 378 SITE 2 AC1 9 LEU B 381 HOH B2288 HOH B2289 HOH B2290 SITE 3 AC1 9 HOH B2291 SITE 1 AC2 6 ARG B 522 TYR B 523 HOH B2292 HOH B2293 SITE 2 AC2 6 HOH B2294 HOH B2296 SITE 1 AC3 4 ARG A 289 ARG A 336 HOH A2228 ARG B 249 SITE 1 AC4 5 ARG A 241 ARG B 306 LEU B 307 GLU B 345 SITE 2 AC4 5 ARG B 433 CRYST1 187.609 51.348 125.582 90.00 128.65 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005330 0.000000 0.004263 0.00000 SCALE2 0.000000 0.019475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010196 0.00000