HEADER CELL INVASION/CELL ADHESION 23-JAN-07 2OMZ TITLE CRYSTAL STRUCTURE OF INLA Y369A/HEC1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN-A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INTERNALIN DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EPITHELIAL-CADHERIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: N-TERMINAL DOMAIN OF HUMAN E-CADHERIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: EGD-E; SOURCE 5 GENE: INLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDH1, CDHE, UVO; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS LEUCINE-RICH-REPEAT, NVASION PROTEIN, IG-LIKE DOMAIN, ADHESION KEYWDS 2 PROTEIN, CELL INVASION-CELL ADHESION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.WOLLERT,D.W.HEINZ,W.D.SCHUBERT REVDAT 6 20-OCT-21 2OMZ 1 REMARK SEQADV REVDAT 5 18-OCT-17 2OMZ 1 REMARK REVDAT 4 13-JUL-11 2OMZ 1 VERSN REVDAT 3 24-FEB-09 2OMZ 1 VERSN REVDAT 2 20-NOV-07 2OMZ 1 JRNL REVDAT 1 28-AUG-07 2OMZ 0 JRNL AUTH T.WOLLERT,D.W.HEINZ,W.D.SCHUBERT JRNL TITL THERMODYNAMICALLY REENGINEERING THE LISTERIAL INVASION JRNL TITL 2 COMPLEX INLA/E-CADHERIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 13960 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17715295 JRNL DOI 10.1073/PNAS.0702199104 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 67548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 793 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4744 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4275 ; 0.019 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6545 ; 1.813 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10078 ; 1.529 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 644 ; 3.928 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 812 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5453 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 789 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 760 ; 0.164 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4998 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2608 ; 0.066 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 640 ; 0.070 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.087 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 104 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 104 ; 0.074 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3079 ; 2.239 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5094 ; 3.198 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1665 ; 3.362 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1451 ; 5.184 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 55.7880 40.5930 40.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.0539 REMARK 3 T33: 0.0658 T12: -0.0162 REMARK 3 T13: -0.0265 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.5685 L22: 1.7093 REMARK 3 L33: 1.4596 L12: -0.7675 REMARK 3 L13: 1.3000 L23: -0.5355 REMARK 3 S TENSOR REMARK 3 S11: 0.1012 S12: -0.0364 S13: -0.1483 REMARK 3 S21: -0.1427 S22: 0.0677 S23: 0.1360 REMARK 3 S31: 0.1228 S32: -0.0869 S33: -0.1689 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 58.0300 26.0270 80.4360 REMARK 3 T TENSOR REMARK 3 T11: 0.0387 T22: 0.0546 REMARK 3 T33: 0.0775 T12: 0.0105 REMARK 3 T13: -0.0068 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.1024 L22: 0.0015 REMARK 3 L33: 0.1713 L12: 0.0994 REMARK 3 L13: -0.1061 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.0062 S13: 0.0356 REMARK 3 S21: -0.0164 S22: 0.0310 S23: 0.0537 REMARK 3 S31: -0.0078 S32: -0.0203 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 496 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1560 3.4580 101.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.0555 T22: 0.0312 REMARK 3 T33: 0.0896 T12: -0.0198 REMARK 3 T13: -0.0236 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.3704 L22: 1.5894 REMARK 3 L33: 0.2099 L12: 0.3420 REMARK 3 L13: -0.2087 L23: -0.3061 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: -0.0073 S13: -0.1064 REMARK 3 S21: 0.1422 S22: -0.1063 S23: -0.0319 REMARK 3 S31: 0.0374 S32: 0.0061 S33: 0.0345 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3480 24.6670 75.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0726 REMARK 3 T33: 0.0379 T12: 0.0139 REMARK 3 T13: 0.0045 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 1.6481 L22: 0.7555 REMARK 3 L33: 1.0990 L12: 0.2760 REMARK 3 L13: -0.0296 L23: -0.6767 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.1970 S13: 0.1069 REMARK 3 S21: 0.0439 S22: 0.0124 S23: 0.0539 REMARK 3 S31: -0.0036 S32: -0.0273 S33: -0.0749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67637 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR 2.2 REMARK 200 STARTING MODEL: 1O6S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CACL2, NA-ACETATE, TRIS/MES, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.66150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.20800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.37050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.20800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.66150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.37050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 496 O REMARK 470 GLY A 497 CA C O REMARK 470 GLN B 101 CA C O CB CG CD OE1 REMARK 470 GLN B 101 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 68 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -161.25 -125.41 REMARK 500 ASN A 108 -162.83 -125.41 REMARK 500 THR A 111 -69.34 -122.12 REMARK 500 MET A 127 26.61 -143.39 REMARK 500 ASN A 152 -158.78 -132.56 REMARK 500 LEU A 163 59.58 -96.33 REMARK 500 LEU A 206 56.79 -90.38 REMARK 500 ASN A 217 -165.37 -114.39 REMARK 500 ASN A 217 -166.71 -114.39 REMARK 500 ALA A 236 43.61 -144.63 REMARK 500 ASN A 239 -163.27 -120.17 REMARK 500 ASN A 239 -163.27 -126.41 REMARK 500 ASN A 261 -154.99 -129.93 REMARK 500 LYS A 264 -61.38 -134.22 REMARK 500 ASN A 283 -156.66 -130.98 REMARK 500 ASN A 283 -156.66 -134.89 REMARK 500 ASN A 327 -158.44 -129.27 REMARK 500 ASN A 327 -161.13 -129.27 REMARK 500 GLU A 330 -64.45 -128.51 REMARK 500 GLU A 330 -63.79 -124.40 REMARK 500 ASN A 393 -155.14 -119.12 REMARK 500 GLU A 455 129.78 -39.53 REMARK 500 LEU B 21 -71.73 -102.93 REMARK 500 ALA B 43 -93.23 -122.60 REMARK 500 ARG B 70 -62.17 -96.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B 68 13.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 532 REMARK 615 HOH A 584 REMARK 615 HOH A 611 REMARK 615 HOH A 621 DBREF 2OMZ A 36 495 UNP P25146 INLA_LISMO 36 495 DBREF 2OMZ B 2 100 UNP P12830 CADH1_HUMAN 156 254 SEQADV 2OMZ PRO A 32 UNP P25146 EXPRESSION TAG SEQADV 2OMZ LEU A 33 UNP P25146 EXPRESSION TAG SEQADV 2OMZ GLY A 34 UNP P25146 EXPRESSION TAG SEQADV 2OMZ SER A 35 UNP P25146 EXPRESSION TAG SEQADV 2OMZ ALA A 369 UNP P25146 TYR 369 ENGINEERED MUTATION SEQADV 2OMZ GLY A 496 UNP P25146 EXPRESSION TAG SEQADV 2OMZ GLY A 497 UNP P25146 EXPRESSION TAG SEQADV 2OMZ GLY B -3 UNP P12830 EXPRESSION TAG SEQADV 2OMZ PRO B -2 UNP P12830 EXPRESSION TAG SEQADV 2OMZ LEU B -1 UNP P12830 EXPRESSION TAG SEQADV 2OMZ GLY B 0 UNP P12830 EXPRESSION TAG SEQADV 2OMZ SER B 1 UNP P12830 EXPRESSION TAG SEQADV 2OMZ GLN B 101 UNP P12830 EXPRESSION TAG SEQRES 1 A 466 PRO LEU GLY SER ALA THR ILE THR GLN ASP THR PRO ILE SEQRES 2 A 466 ASN GLN ILE PHE THR ASP THR ALA LEU ALA GLU LYS MET SEQRES 3 A 466 LYS THR VAL LEU GLY LYS THR ASN VAL THR ASP THR VAL SEQRES 4 A 466 SER GLN THR ASP LEU ASP GLN VAL THR THR LEU GLN ALA SEQRES 5 A 466 ASP ARG LEU GLY ILE LYS SER ILE ASP GLY VAL GLU TYR SEQRES 6 A 466 LEU ASN ASN LEU THR GLN ILE ASN PHE SER ASN ASN GLN SEQRES 7 A 466 LEU THR ASP ILE THR PRO LEU LYS ASN LEU THR LYS LEU SEQRES 8 A 466 VAL ASP ILE LEU MET ASN ASN ASN GLN ILE ALA ASP ILE SEQRES 9 A 466 THR PRO LEU ALA ASN LEU THR ASN LEU THR GLY LEU THR SEQRES 10 A 466 LEU PHE ASN ASN GLN ILE THR ASP ILE ASP PRO LEU LYS SEQRES 11 A 466 ASN LEU THR ASN LEU ASN ARG LEU GLU LEU SER SER ASN SEQRES 12 A 466 THR ILE SER ASP ILE SER ALA LEU SER GLY LEU THR SER SEQRES 13 A 466 LEU GLN GLN LEU SER PHE GLY ASN GLN VAL THR ASP LEU SEQRES 14 A 466 LYS PRO LEU ALA ASN LEU THR THR LEU GLU ARG LEU ASP SEQRES 15 A 466 ILE SER SER ASN LYS VAL SER ASP ILE SER VAL LEU ALA SEQRES 16 A 466 LYS LEU THR ASN LEU GLU SER LEU ILE ALA THR ASN ASN SEQRES 17 A 466 GLN ILE SER ASP ILE THR PRO LEU GLY ILE LEU THR ASN SEQRES 18 A 466 LEU ASP GLU LEU SER LEU ASN GLY ASN GLN LEU LYS ASP SEQRES 19 A 466 ILE GLY THR LEU ALA SER LEU THR ASN LEU THR ASP LEU SEQRES 20 A 466 ASP LEU ALA ASN ASN GLN ILE SER ASN LEU ALA PRO LEU SEQRES 21 A 466 SER GLY LEU THR LYS LEU THR GLU LEU LYS LEU GLY ALA SEQRES 22 A 466 ASN GLN ILE SER ASN ILE SER PRO LEU ALA GLY LEU THR SEQRES 23 A 466 ALA LEU THR ASN LEU GLU LEU ASN GLU ASN GLN LEU GLU SEQRES 24 A 466 ASP ILE SER PRO ILE SER ASN LEU LYS ASN LEU THR TYR SEQRES 25 A 466 LEU THR LEU TYR PHE ASN ASN ILE SER ASP ILE SER PRO SEQRES 26 A 466 VAL SER SER LEU THR LYS LEU GLN ARG LEU PHE PHE ALA SEQRES 27 A 466 ASN ASN LYS VAL SER ASP VAL SER SER LEU ALA ASN LEU SEQRES 28 A 466 THR ASN ILE ASN TRP LEU SER ALA GLY HIS ASN GLN ILE SEQRES 29 A 466 SER ASP LEU THR PRO LEU ALA ASN LEU THR ARG ILE THR SEQRES 30 A 466 GLN LEU GLY LEU ASN ASP GLN ALA TRP THR ASN ALA PRO SEQRES 31 A 466 VAL ASN TYR LYS ALA ASN VAL SER ILE PRO ASN THR VAL SEQRES 32 A 466 LYS ASN VAL THR GLY ALA LEU ILE ALA PRO ALA THR ILE SEQRES 33 A 466 SER ASP GLY GLY SER TYR THR GLU PRO ASP ILE THR TRP SEQRES 34 A 466 ASN LEU PRO SER TYR THR ASN GLU VAL SER TYR THR PHE SEQRES 35 A 466 SER GLN PRO VAL THR ILE GLY LYS GLY THR THR THR PHE SEQRES 36 A 466 SER GLY THR VAL THR GLN PRO LEU LYS GLY GLY SEQRES 1 B 105 GLY PRO LEU GLY SER TRP VAL ILE PRO PRO ILE SER CYS SEQRES 2 B 105 PRO GLU ASN GLU LYS GLY PRO PHE PRO LYS ASN LEU VAL SEQRES 3 B 105 GLN ILE LYS SER ASN LYS ASP LYS GLU GLY LYS VAL PHE SEQRES 4 B 105 TYR SER ILE THR GLY GLN GLY ALA ASP THR PRO PRO VAL SEQRES 5 B 105 GLY VAL PHE ILE ILE GLU ARG GLU THR GLY TRP LEU LYS SEQRES 6 B 105 VAL THR GLU PRO LEU ASP ARG GLU ARG ILE ALA THR TYR SEQRES 7 B 105 THR LEU PHE SER HIS ALA VAL SER SER ASN GLY ASN ALA SEQRES 8 B 105 VAL GLU ASP PRO MET GLU ILE LEU ILE THR VAL THR ASP SEQRES 9 B 105 GLN FORMUL 3 HOH *793(H2 O) HELIX 1 1 ILE A 44 PHE A 48 1 5 HELIX 2 2 ASP A 50 LEU A 61 1 12 HELIX 3 3 SER A 71 ASP A 76 1 6 HELIX 4 4 GLY A 93 LEU A 97 5 5 HELIX 5 5 ILE A 113 LYS A 117 5 5 HELIX 6 6 ILE A 135 ALA A 139 5 5 HELIX 7 7 ILE A 157 LYS A 161 5 5 HELIX 8 8 ILE A 179 SER A 183 5 5 HELIX 9 9 LEU A 200 ALA A 204 5 5 HELIX 10 10 ILE A 222 LEU A 228 5 7 HELIX 11 11 ILE A 244 LEU A 250 5 7 HELIX 12 12 ILE A 266 LEU A 272 5 7 HELIX 13 13 LEU A 288 SER A 292 5 5 HELIX 14 14 ILE A 310 ALA A 314 5 5 HELIX 15 15 ILE A 332 LEU A 338 5 7 HELIX 16 16 ILE A 354 LEU A 360 5 7 HELIX 17 17 VAL A 376 LEU A 382 5 7 HELIX 18 18 LEU A 398 ALA A 402 5 5 HELIX 19 19 LYS B 28 GLU B 31 5 4 SHEET 1 A 2 THR A 42 PRO A 43 0 SHEET 2 A 2 THR A 69 VAL A 70 -1 O VAL A 70 N THR A 42 SHEET 1 B16 THR A 80 GLN A 82 0 SHEET 2 B16 GLN A 102 ASN A 104 1 O ASN A 104 N LEU A 81 SHEET 3 B16 ASP A 124 LEU A 126 1 O LEU A 126 N ILE A 103 SHEET 4 B16 GLY A 146 THR A 148 1 O THR A 148 N ILE A 125 SHEET 5 B16 ARG A 168 ILE A 176 1 O GLU A 170 N LEU A 147 SHEET 6 B16 GLN A 190 ASN A 195 1 O GLN A 190 N LEU A 169 SHEET 7 B16 ARG A 211 ASP A 213 1 O ARG A 211 N LEU A 191 SHEET 8 B16 SER A 233 ILE A 235 1 O ILE A 235 N LEU A 212 SHEET 9 B16 GLU A 255 SER A 257 1 O SER A 257 N LEU A 234 SHEET 10 B16 ASP A 277 ASP A 279 1 O ASP A 279 N LEU A 256 SHEET 11 B16 GLU A 299 LYS A 301 1 O GLU A 299 N LEU A 278 SHEET 12 B16 ASN A 321 GLU A 323 1 O GLU A 323 N LEU A 300 SHEET 13 B16 TYR A 343 THR A 345 1 O TYR A 343 N LEU A 322 SHEET 14 B16 ARG A 365 PHE A 367 1 O PHE A 367 N LEU A 344 SHEET 15 B16 TRP A 387 SER A 389 1 O SER A 389 N LEU A 366 SHEET 16 B16 GLN A 409 GLY A 411 1 O GLN A 409 N LEU A 388 SHEET 1 C 3 GLN A 415 THR A 418 0 SHEET 2 C 3 GLY A 482 LYS A 495 1 O SER A 487 N GLN A 415 SHEET 3 C 3 VAL A 422 ASN A 423 1 N VAL A 422 O LYS A 495 SHEET 1 D 4 GLN A 415 THR A 418 0 SHEET 2 D 4 GLY A 482 LYS A 495 1 O SER A 487 N GLN A 415 SHEET 3 D 4 GLU A 468 ILE A 479 -1 N VAL A 469 O GLN A 492 SHEET 4 D 4 THR A 446 ILE A 447 -1 N THR A 446 O THR A 472 SHEET 1 E 3 SER A 429 PRO A 431 0 SHEET 2 E 3 ASP A 457 THR A 459 -1 O ILE A 458 N ILE A 430 SHEET 3 E 3 SER A 452 THR A 454 -1 N SER A 452 O THR A 459 SHEET 1 F 2 TRP B 2 VAL B 3 0 SHEET 2 F 2 LYS B 25 SER B 26 -1 O LYS B 25 N VAL B 3 SHEET 1 G 4 CYS B 9 PRO B 10 0 SHEET 2 G 4 MET B 92 THR B 99 1 O THR B 99 N CYS B 9 SHEET 3 G 4 THR B 73 VAL B 81 -1 N LEU B 76 O ILE B 94 SHEET 4 G 4 PHE B 35 GLY B 40 -1 N PHE B 35 O VAL B 81 SHEET 1 H 3 LYS B 19 GLN B 23 0 SHEET 2 H 3 TRP B 59 VAL B 62 -1 O LEU B 60 N VAL B 22 SHEET 3 H 3 PHE B 51 ILE B 53 -1 N ILE B 52 O LYS B 61 CISPEP 1 GLY A 194 ASN A 195 0 3.21 CISPEP 2 GLU A 455 PRO A 456 0 1.69 CISPEP 3 GLY B 15 PRO B 16 0 1.02 CISPEP 4 PHE B 17 PRO B 18 0 -2.28 CISPEP 5 PRO B 46 PRO B 47 0 -2.01 CRYST1 55.323 84.741 108.416 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009224 0.00000