HEADER HORMONE 11-NOV-10 2L60 TITLE A NOVEL DESIGN CONCEPT: NEW Y-RECEPTOR AGONISTS WITH INCREASED TITLE 2 MEMBRANE RECRUITMENT, Y2 AFFINITY AND SELECTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE YY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 41-64; COMPND 5 SYNONYM: PYY, PYY-I, PEPTIDE TYROSINE TYROSINE, PEPTIDE YY(3-36), COMPND 6 PYY-II; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS GPCR LIGAND, HORMONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.L.PEDERSEN,S.JURT,O.ZERBE,K.J.JENSEN REVDAT 3 14-JUN-23 2L60 1 REMARK REVDAT 2 05-FEB-20 2L60 1 REMARK SEQADV LINK REVDAT 1 05-OCT-11 2L60 0 JRNL AUTH N.L.PEDERSEN,S.JURT,O.ZERBE,K.J.JENSEN JRNL TITL A NOVEL DESIGN CONCEPT: NEW Y-RECEPTOR AGONISTS WITH JRNL TITL 2 INCREASED MEMBRANE RECRUITMENT, Y2 AFFINITY AND SELECTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, AMBER 6 REMARK 3 AUTHORS : P.GUNTERT ET AL. (CYANA), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000102000. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM ENTITY, 1 MM RNH, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 56.48 -118.77 REMARK 500 1 ARG A 39 63.56 -157.94 REMARK 500 2 LEU A 34 12.69 -141.41 REMARK 500 2 ARG A 39 71.29 -167.76 REMARK 500 3 LEU A 2 -62.66 71.20 REMARK 500 4 VAL A 35 -112.37 -120.82 REMARK 500 5 LEU A 2 -61.09 -160.49 REMARK 500 5 GLU A 3 -70.71 -48.44 REMARK 500 5 GLU A 12 -73.31 -77.29 REMARK 500 5 THR A 36 -16.61 -43.75 REMARK 500 5 GLN A 38 13.01 57.53 REMARK 500 5 ARG A 39 70.38 -163.36 REMARK 500 6 VAL A 35 -106.56 -118.36 REMARK 500 6 ARG A 39 69.67 -175.30 REMARK 500 7 LEU A 2 -48.11 75.29 REMARK 500 8 LEU A 2 67.31 74.27 REMARK 500 8 LYS A 14 -8.80 -59.97 REMARK 500 8 LEU A 16 36.82 -83.23 REMARK 500 8 SER A 17 145.07 57.99 REMARK 500 8 ARG A 39 64.23 -156.10 REMARK 500 9 SER A 17 139.74 70.59 REMARK 500 9 ARG A 39 68.50 -174.75 REMARK 500 10 SER A 17 143.75 67.98 REMARK 500 11 GLU A 5 -36.54 82.34 REMARK 500 11 ARG A 39 74.14 -163.35 REMARK 500 12 LEU A 16 46.39 -108.85 REMARK 500 12 SER A 17 139.61 55.27 REMARK 500 12 VAL A 35 -107.00 -131.39 REMARK 500 13 ARG A 39 76.58 -160.20 REMARK 500 14 TYR A 31 -80.14 -58.94 REMARK 500 14 ARG A 37 37.71 82.00 REMARK 500 15 VAL A 35 -111.81 -132.24 REMARK 500 16 LEU A 2 71.20 -69.35 REMARK 500 16 SER A 17 152.86 54.09 REMARK 500 16 VAL A 35 -109.82 -139.82 REMARK 500 17 GLU A 5 -46.34 88.33 REMARK 500 19 GLU A 3 -64.88 -128.98 REMARK 500 20 LEU A 2 75.83 59.19 REMARK 500 20 SER A 17 137.86 59.88 REMARK 500 20 ARG A 39 65.15 -164.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 TYR A 40 0.09 SIDE CHAIN REMARK 500 13 TYR A 1 0.07 SIDE CHAIN REMARK 500 15 TYR A 40 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17291 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITED SEQUENCE IS A DESIGNED VARIANT OF THE PEPTIDE PYY. REMARK 999 THE C-TERMINAL RESIDUES CORRESPOND TO THE SEQUENCE OF HUMAN PYY, REMARK 999 THE N-TERMINAL SEGMENT WAS REPLACED WITH A DESIGNED SEQUENCE. DBREF 2L60 A 1 16 PDB 2L60 2L60 1 16 DBREF 2L60 A 17 40 UNP P10082 PYY_HUMAN 41 64 SEQADV 2L60 NH2 A 41 UNP P10082 AMIDATION SEQRES 1 A 41 TYR LEU GLU ARG GLU LEU LYS LYS LEU GLU ARG GLU LEU SEQRES 2 A 41 LYS LYS LEU SER PRO GLU GLU LEU ASN ARG TYR TYR ALA SEQRES 3 A 41 SER LEU ARG HIS TYR LEU ASN LEU VAL THR ARG GLN ARG SEQRES 4 A 41 TYR NH2 HET NH2 A 41 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 LEU A 2 LYS A 14 1 13 HELIX 2 2 SER A 17 THR A 36 1 20 LINK C TYR A 40 N NH2 A 41 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20