HEADER MEMBRANE PROTEIN 22-DEC-08 2KCJ TITLE SOLUTION STRUCTURE OF FAPP1 PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-100, PH DOMAIN; COMPND 5 SYNONYM: PHOSPHOINOSITOL 4-PHOSPHATE ADAPTOR PROTEIN 1, FAPP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLEKHA3, FAPP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS FAPP1, PH DOMAIN, LIPID-BINDING, MEMBRANE, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.LENOIR,U.COSKUN,J.JAMES,K.SIMONS,M.OVERDUIN REVDAT 3 20-OCT-21 2KCJ 1 SEQADV REVDAT 2 28-MAY-14 2KCJ 1 JRNL VERSN REVDAT 1 22-DEC-09 2KCJ 0 JRNL AUTH M.LENOIR,U.COSKUN,M.GRZYBEK,X.CAO,S.B.BUSCHHORN,J.JAMES, JRNL AUTH 2 K.SIMONS,M.OVERDUIN JRNL TITL STRUCTURAL BASIS OF WEDGING THE GOLGI MEMBRANE BY FAPP JRNL TITL 2 PLECKSTRIN HOMOLOGY DOMAINS. JRNL REF EMBO REP. V. 11 279 2010 JRNL REFN ISSN 1469-221X JRNL PMID 20300118 JRNL DOI 10.1038/EMBOR.2010.28 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2, ARIA 2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000100950. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM TRIS, 1 MM SODIUM AZIDE, REMARK 210 100 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HCCH-TOCSY; REMARK 210 3D CBCA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 -71.23 -116.60 REMARK 500 1 HIS A 54 -89.50 -105.51 REMARK 500 1 SER A 55 -53.49 -141.88 REMARK 500 1 GLU A 68 -69.68 -97.06 REMARK 500 1 GLN A 69 -162.70 48.77 REMARK 500 1 SER A 94 65.71 67.85 REMARK 500 1 ASP A 97 179.52 67.19 REMARK 500 2 PRO A -6 93.24 -62.61 REMARK 500 2 THR A 9 -77.43 -109.63 REMARK 500 2 SER A 43 -177.15 54.43 REMARK 500 2 HIS A 54 40.45 71.45 REMARK 500 2 SER A 55 -72.96 -66.62 REMARK 500 2 ALA A 56 -77.19 -167.54 REMARK 500 2 THR A 59 -7.30 69.45 REMARK 500 2 GLN A 69 -163.29 45.56 REMARK 500 2 SER A 94 45.63 70.37 REMARK 500 2 THR A 96 -174.89 -66.23 REMARK 500 3 SER A -3 -44.78 -152.16 REMARK 500 3 PRO A -2 90.06 -64.43 REMARK 500 3 ALA A 56 -73.92 -161.81 REMARK 500 3 ASN A 58 -82.27 -69.81 REMARK 500 3 GLU A 68 -68.56 -100.44 REMARK 500 3 GLN A 69 -168.47 48.98 REMARK 500 3 SER A 94 72.80 63.47 REMARK 500 3 LEU A 95 -161.10 -115.53 REMARK 500 3 THR A 98 73.67 52.89 REMARK 500 4 SER A -3 -53.08 -153.09 REMARK 500 4 PRO A -2 98.89 -55.00 REMARK 500 4 THR A 9 -70.16 -110.66 REMARK 500 4 ALA A 56 -62.58 -162.61 REMARK 500 4 GLN A 69 -161.80 45.21 REMARK 500 4 THR A 96 -169.92 -71.49 REMARK 500 5 THR A 9 -78.74 -125.00 REMARK 500 5 SER A 55 -12.86 73.85 REMARK 500 5 THR A 59 -136.59 53.13 REMARK 500 5 ARG A 60 95.53 48.72 REMARK 500 5 GLU A 68 -65.62 -107.67 REMARK 500 5 GLN A 69 -163.26 47.18 REMARK 500 5 ASP A 97 -174.94 66.84 REMARK 500 6 PRO A -2 104.04 -51.12 REMARK 500 6 PRO A 17 94.94 -68.42 REMARK 500 6 THR A 59 82.44 -64.31 REMARK 500 6 ARG A 60 106.67 -160.77 REMARK 500 6 GLU A 68 -78.53 -91.91 REMARK 500 6 GLN A 69 -156.85 43.06 REMARK 500 6 THR A 96 172.62 56.64 REMARK 500 7 SER A -3 -52.05 -148.99 REMARK 500 7 HIS A 54 -44.44 77.45 REMARK 500 7 THR A 59 -3.37 66.52 REMARK 500 7 GLU A 68 -71.23 -98.12 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KCJ A 1 100 UNP Q9HB20 PKHA3_HUMAN 1 100 SEQADV 2KCJ GLY A -7 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ PRO A -6 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ LEU A -5 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ GLY A -4 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ SER A -3 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ PRO A -2 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ GLU A -1 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ PHE A 0 UNP Q9HB20 EXPRESSION TAG SEQADV 2KCJ SER A 94 UNP Q9HB20 CYS 94 ENGINEERED MUTATION SEQRES 1 A 108 GLY PRO LEU GLY SER PRO GLU PHE MET GLU GLY VAL LEU SEQRES 2 A 108 TYR LYS TRP THR ASN TYR LEU THR GLY TRP GLN PRO ARG SEQRES 3 A 108 TRP PHE VAL LEU ASP ASN GLY ILE LEU SER TYR TYR ASP SEQRES 4 A 108 SER GLN ASP ASP VAL CYS LYS GLY SER LYS GLY SER ILE SEQRES 5 A 108 LYS MET ALA VAL CYS GLU ILE LYS VAL HIS SER ALA ASP SEQRES 6 A 108 ASN THR ARG MET GLU LEU ILE ILE PRO GLY GLU GLN HIS SEQRES 7 A 108 PHE TYR MET LYS ALA VAL ASN ALA ALA GLU ARG GLN ARG SEQRES 8 A 108 TRP LEU VAL ALA LEU GLY SER SER LYS ALA SER LEU THR SEQRES 9 A 108 ASP THR ARG THR HELIX 1 1 SER A 32 GLY A 39 1 8 HELIX 2 2 ALA A 47 CYS A 49 5 3 HELIX 3 3 ASN A 77 ALA A 93 1 17 SHEET 1 A 4 MET A 1 TRP A 8 0 SHEET 2 A 4 TRP A 15 ASP A 23 -1 O LEU A 22 N MET A 1 SHEET 3 A 4 ILE A 26 TYR A 30 -1 O ILE A 26 N ASP A 23 SHEET 4 A 4 SER A 43 LYS A 45 -1 O ILE A 44 N LEU A 27 SHEET 1 B 3 GLU A 50 LYS A 52 0 SHEET 2 B 3 ARG A 60 ILE A 64 -1 O GLU A 62 N LYS A 52 SHEET 3 B 3 PHE A 71 LYS A 74 -1 O PHE A 71 N LEU A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20