HEADER TRANSCRIPTION 25-APR-06 2GS0 TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THE TFB1 SUBUNIT TITLE 2 FROM TFIIH AND THE ACTIVATION DOMAIN OF P53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT, RNA COMPND 5 POLYMERASE II TRANSCRIPTION FACTOR B 73 KDA SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: TUMOR SUPPRESSOR P53; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TP53; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-2TK KEYWDS P53, TFIIH, TFB1, ACTIVATION, TRANSCRIPTION, PH DOMAIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.DI LELLO,T.N.JONES,B.D.NGUYEN,P.LEGAULT,J.G.OMICHINSKI REVDAT 3 20-OCT-21 2GS0 1 REMARK SEQADV REVDAT 2 24-FEB-09 2GS0 1 VERSN REVDAT 1 31-OCT-06 2GS0 0 JRNL AUTH P.DI LELLO,L.M.JENKINS,T.N.JONES,B.D.NGUYEN,T.HARA, JRNL AUTH 2 H.YAMAGUCHI,J.D.DIKEAKOS,E.APPELLA,P.LEGAULT,J.G.OMICHINSKI JRNL TITL STRUCTURE OF THE TFB1/P53 COMPLEX: INSIGHTS INTO THE JRNL TITL 2 INTERACTION BETWEEN THE P62/TFB1 SUBUNIT OF TFIIH AND THE JRNL TITL 3 ACTIVATION DOMAIN OF P53. JRNL REF MOL.CELL V. 22 731 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16793543 JRNL DOI 10.1016/J.MOLCEL.2006.05.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1.C, CNS 1.0 REMARK 3 AUTHORS : VARIAN (VNMR), A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, REMARK 3 W.L.DELANO, P.GROS, R.W.GROSSE-KUNSTLEVE, J.- REMARK 3 S.JIANG, J.KUSZEWSKI, M.NILGES, N.S.PANNU, REMARK 3 R.J.READ, L.M.RICE, T.SIMONSON, G.L.WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE THREE-DIMENSIONAL STRUCTURES OF THE COMPLEX TFB1/P53 WERE REMARK 3 DETERMINED USING A SET OF 1720 NOE-DERIVED DISTANCE RESTRAINTS, REMARK 3 138 BACKBONE DIHEDRAL ANGLE (PHI AND PSI) RESTRAINTS AND 26 REMARK 3 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. REMARK 3 BECAUSE OF THE ABSENCE OF MEDIUM-RANGE, LONG-RANGE AND REMARK 3 INTERMOLECULAR NOES REMARK 3 INVOLVING RESIDUES 20-44 AND 59-73 OF P53 (CHAIN B), THESE AMINO REMARK 3 ACIDS WERE NOT REMARK 3 INCLUDED IN THE CALCULATIONS. REMARK 4 REMARK 4 2GS0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037482. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM TFB1 U-15N, 1.0 MM P53 REMARK 210 UNLABELED, 1.00 MM EDTA, 20 MM REMARK 210 PHOSPHATE BUFFER; 90% H2O, 10% REMARK 210 D2O; 1.0 MM TFB1 U-15N,13C, 1.0 REMARK 210 MM P53 UNLABELED, 1.00 MM EDTA, REMARK 210 20 MM PHOSPHATE BUFFER; 100% D20; REMARK 210 1.0 MM P53 U-15N, 1.0 MM TFB1 REMARK 210 UNLABELED, 1.00 MM EDTA, 20 MM REMARK 210 PHOSPHATE BUFFER; 90% H2O, 10% REMARK 210 D2O; 1.0 MM P53 U-15N, 1.0 MM REMARK 210 TFB1 UNLABELED, 1.00 MM EDTA, 20 REMARK 210 MM PHOSPHATE BUFFER; 100% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-EDITED NOESY-HSQC; 3D 13C REMARK 210 -EDITED HMQC-NOESY; 3D 15N-13C { REMARK 210 F1}-FILTERED {F3}-EDITED NOESY; REMARK 210 2D 1H-15N HSQC; 2D CT-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, NMRVIEW 5.0.4, CNS REMARK 210 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, WITH A REMARK 210 COMBINATION OF TORSION ANGLE AND REMARK 210 CARTESIAN DYNAMICS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 67 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 LEU B 22 REMARK 465 TRP B 23 REMARK 465 LYS B 24 REMARK 465 LEU B 25 REMARK 465 LEU B 26 REMARK 465 PRO B 27 REMARK 465 GLU B 28 REMARK 465 ASN B 29 REMARK 465 ASN B 30 REMARK 465 VAL B 31 REMARK 465 LEU B 32 REMARK 465 SER B 33 REMARK 465 PRO B 34 REMARK 465 LEU B 35 REMARK 465 PRO B 36 REMARK 465 SER B 37 REMARK 465 GLN B 38 REMARK 465 ALA B 39 REMARK 465 MET B 40 REMARK 465 ASP B 41 REMARK 465 ASP B 42 REMARK 465 LEU B 43 REMARK 465 MET B 44 REMARK 465 GLY B 59 REMARK 465 PRO B 60 REMARK 465 ASP B 61 REMARK 465 GLU B 62 REMARK 465 ALA B 63 REMARK 465 PRO B 64 REMARK 465 ARG B 65 REMARK 465 MET B 66 REMARK 465 PRO B 67 REMARK 465 GLU B 68 REMARK 465 ALA B 69 REMARK 465 ALA B 70 REMARK 465 PRO B 71 REMARK 465 PRO B 72 REMARK 465 VAL B 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 129.28 177.59 REMARK 500 1 ALA A 6 100.57 -43.70 REMARK 500 1 SER A 31 167.18 -45.44 REMARK 500 1 ILE A 45 101.50 -47.27 REMARK 500 1 VAL A 66 -162.13 -121.55 REMARK 500 1 ASP A 67 55.41 -175.99 REMARK 500 1 LYS A 71 92.03 59.62 REMARK 500 1 PRO A 82 161.66 -45.61 REMARK 500 1 GLU B 56 -166.21 44.50 REMARK 500 2 SER A 2 -39.21 -177.68 REMARK 500 2 SER A 4 114.96 -178.61 REMARK 500 2 ALA A 6 121.13 -32.71 REMARK 500 2 SER A 31 156.80 -44.54 REMARK 500 2 ILE A 45 91.91 -56.20 REMARK 500 2 VAL A 66 -161.92 -113.30 REMARK 500 2 ASP A 67 67.79 -176.97 REMARK 500 2 LYS A 71 92.99 60.38 REMARK 500 3 SER A 2 114.55 61.04 REMARK 500 3 SER A 4 161.73 177.60 REMARK 500 3 ALA A 6 103.60 -46.64 REMARK 500 3 SER A 31 168.02 -46.11 REMARK 500 3 ILE A 45 90.59 -56.64 REMARK 500 3 VAL A 66 -162.13 -105.20 REMARK 500 3 ASP A 67 68.99 -173.55 REMARK 500 3 LYS A 71 92.64 60.26 REMARK 500 4 SER A 2 -60.96 -169.26 REMARK 500 4 SER A 4 115.73 179.14 REMARK 500 4 ALA A 6 120.09 -32.93 REMARK 500 4 SER A 31 158.36 -44.42 REMARK 500 4 ILE A 45 91.53 -56.04 REMARK 500 4 VAL A 66 -167.55 -79.62 REMARK 500 4 ASP A 67 59.51 -148.44 REMARK 500 4 LYS A 71 95.22 63.43 REMARK 500 4 GLU B 56 -166.39 45.00 REMARK 500 5 SER A 2 -83.08 61.22 REMARK 500 5 SER A 31 164.36 -45.37 REMARK 500 5 ILE A 45 93.53 -51.17 REMARK 500 5 ASP A 67 70.97 -175.14 REMARK 500 5 LYS A 71 94.32 62.29 REMARK 500 6 SER A 2 112.43 60.75 REMARK 500 6 SER A 4 162.41 178.11 REMARK 500 6 ALA A 6 102.87 -46.88 REMARK 500 6 SER A 31 165.37 -45.47 REMARK 500 6 ILE A 45 98.80 -49.62 REMARK 500 6 MET A 59 147.22 -172.85 REMARK 500 6 VAL A 66 -162.31 -121.16 REMARK 500 6 ASP A 67 71.11 -177.67 REMARK 500 6 LYS A 71 93.09 60.67 REMARK 500 7 SER A 2 103.85 57.32 REMARK 500 7 SER A 4 172.99 178.47 REMARK 500 REMARK 500 THIS ENTRY HAS 168 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2GS0 A 1 115 UNP P32776 TFB1_YEAST 1 115 DBREF 2GS0 B 20 73 UNP P04637 P53_HUMAN 20 73 SEQADV 2GS0 PRO A 1 UNP P32776 MET 1 ENGINEERED MUTATION SEQRES 1 A 115 PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER SEQRES 2 A 115 GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU SEQRES 3 A 115 LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR SEQRES 4 A 115 VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO SEQRES 5 A 115 ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS SEQRES 6 A 115 VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN SEQRES 7 A 115 GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE SEQRES 8 A 115 ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU SEQRES 9 A 115 GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP SEQRES 1 B 54 SER ASP LEU TRP LYS LEU LEU PRO GLU ASN ASN VAL LEU SEQRES 2 B 54 SER PRO LEU PRO SER GLN ALA MET ASP ASP LEU MET LEU SEQRES 3 B 54 SER PRO ASP ASP ILE GLU GLN TRP PHE THR GLU ASP PRO SEQRES 4 B 54 GLY PRO ASP GLU ALA PRO ARG MET PRO GLU ALA ALA PRO SEQRES 5 B 54 PRO VAL HELIX 1 1 ASP A 67 LYS A 71 5 5 HELIX 2 2 ASN A 93 ASP A 115 1 23 HELIX 3 3 SER B 46 GLU B 56 1 11 SHEET 1 A 7 VAL A 37 VAL A 41 0 SHEET 2 A 7 GLU A 26 SER A 31 -1 N LEU A 27 O VAL A 40 SHEET 3 A 7 VAL A 12 ASN A 19 -1 N ILE A 15 O ARG A 30 SHEET 4 A 7 SER A 4 PHE A 9 -1 N GLY A 5 O ILE A 16 SHEET 5 A 7 GLN A 85 SER A 90 -1 O SER A 90 N ILE A 8 SHEET 6 A 7 LEU A 60 GLY A 64 -1 N LEU A 60 O PHE A 89 SHEET 7 A 7 ILE A 45 ALA A 50 -1 N GLN A 49 O ARG A 61 SHEET 1 B 2 ARG A 72 LYS A 73 0 SHEET 2 B 2 GLU A 79 VAL A 80 -1 O VAL A 80 N ARG A 72 CISPEP 1 SER A 23 PRO A 24 1 -0.18 CISPEP 2 SER A 23 PRO A 24 2 -0.10 CISPEP 3 SER A 23 PRO A 24 3 0.10 CISPEP 4 SER A 23 PRO A 24 4 -0.04 CISPEP 5 SER A 23 PRO A 24 5 0.14 CISPEP 6 SER A 23 PRO A 24 6 0.00 CISPEP 7 SER A 23 PRO A 24 7 0.00 CISPEP 8 SER A 23 PRO A 24 8 -0.07 CISPEP 9 SER A 23 PRO A 24 9 -0.08 CISPEP 10 SER A 23 PRO A 24 10 0.09 CISPEP 11 SER A 23 PRO A 24 11 -0.02 CISPEP 12 SER A 23 PRO A 24 12 0.08 CISPEP 13 SER A 23 PRO A 24 13 0.12 CISPEP 14 SER A 23 PRO A 24 14 0.01 CISPEP 15 SER A 23 PRO A 24 15 -0.01 CISPEP 16 SER A 23 PRO A 24 16 -0.15 CISPEP 17 SER A 23 PRO A 24 17 0.13 CISPEP 18 SER A 23 PRO A 24 18 -0.06 CISPEP 19 SER A 23 PRO A 24 19 -0.05 CISPEP 20 SER A 23 PRO A 24 20 0.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20