HEADER SIGNALING PROTEIN 20-APR-06 2DLZ TITLE SOLUTION STRUCTURE OF THE SH2 DOMAIN OF HUMAN PROTEIN VAV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN VAV-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAV2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050620-24; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS RHO FAMILY GUANINE NUCLEOTIDE EXCHANGE FACTOR, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ENDO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DLZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DLZ 1 VERSN REVDAT 1 03-APR-07 2DLZ 0 JRNL AUTH H.ENDO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH2 DOMAIN OF HUMAN PROTEIN VAV-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DLZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025570. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 22 54.54 -94.00 REMARK 500 1 MET A 23 -178.67 -68.26 REMARK 500 1 HIS A 35 -177.13 -53.57 REMARK 500 1 SER A 37 35.08 -84.83 REMARK 500 1 PRO A 46 84.25 -69.81 REMARK 500 1 THR A 77 27.63 47.19 REMARK 500 1 GLU A 78 50.89 38.64 REMARK 500 1 ASP A 83 -35.90 -39.65 REMARK 500 1 LEU A 108 103.14 -37.79 REMARK 500 1 LYS A 109 -74.81 -94.76 REMARK 500 1 PRO A 111 -176.35 -69.90 REMARK 500 1 PRO A 115 94.53 -69.85 REMARK 500 2 ASN A 22 78.83 -67.18 REMARK 500 2 HIS A 35 -179.33 -59.28 REMARK 500 2 ARG A 51 -64.18 -94.81 REMARK 500 2 THR A 77 25.24 44.22 REMARK 500 2 SER A 84 -177.27 -175.21 REMARK 500 2 LEU A 108 96.64 -42.23 REMARK 500 2 LYS A 109 -73.47 -87.71 REMARK 500 2 PRO A 111 -165.21 -69.79 REMARK 500 3 HIS A 35 -176.72 -58.35 REMARK 500 3 ASP A 60 26.38 49.33 REMARK 500 3 THR A 77 25.60 44.47 REMARK 500 3 SER A 84 -176.89 -172.74 REMARK 500 3 LEU A 108 97.66 -46.36 REMARK 500 3 LYS A 109 -70.16 -85.74 REMARK 500 3 PRO A 111 -163.75 -69.75 REMARK 500 4 ARG A 9 96.18 -58.00 REMARK 500 4 HIS A 35 174.66 -52.34 REMARK 500 4 PRO A 46 85.17 -69.79 REMARK 500 4 ALA A 49 -73.10 -60.20 REMARK 500 4 THR A 77 25.34 44.38 REMARK 500 4 LEU A 108 106.53 -34.53 REMARK 500 4 LYS A 109 -75.03 -98.05 REMARK 500 4 PRO A 111 -175.95 -69.73 REMARK 500 4 SER A 113 -75.18 -96.85 REMARK 500 4 PRO A 115 86.55 -69.78 REMARK 500 5 ASN A 22 54.64 33.70 REMARK 500 5 HIS A 35 -178.38 -68.07 REMARK 500 5 ALA A 49 -64.63 -98.18 REMARK 500 5 GLU A 50 96.26 -67.94 REMARK 500 5 THR A 77 25.12 46.51 REMARK 500 5 LEU A 108 91.31 -46.54 REMARK 500 5 PRO A 111 -168.49 -69.71 REMARK 500 5 SER A 113 72.12 -68.02 REMARK 500 6 SER A 8 39.20 38.61 REMARK 500 6 ILE A 11 130.59 -34.62 REMARK 500 6 ASN A 22 55.04 33.74 REMARK 500 6 SER A 37 31.95 -87.62 REMARK 500 6 ALA A 49 -72.70 -129.38 REMARK 500 REMARK 500 THIS ENTRY HAS 215 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DLZ A 8 112 UNP P52735 VAV2_HUMAN 663 767 SEQADV 2DLZ GLY A 1 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ SER A 2 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ SER A 3 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ GLY A 4 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ SER A 5 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ SER A 6 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ GLY A 7 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ SER A 113 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ GLY A 114 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ PRO A 115 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ SER A 116 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ SER A 117 UNP P52735 CLONING ARTIFACT SEQADV 2DLZ GLY A 118 UNP P52735 CLONING ARTIFACT SEQRES 1 A 118 GLY SER SER GLY SER SER GLY SER ARG GLU ILE ASP TYR SEQRES 2 A 118 THR ALA TYR PRO TRP PHE ALA GLY ASN MET GLU ARG GLN SEQRES 3 A 118 GLN THR ASP ASN LEU LEU LYS SER HIS ALA SER GLY THR SEQRES 4 A 118 TYR LEU ILE ARG GLU ARG PRO ALA GLU ALA GLU ARG PHE SEQRES 5 A 118 ALA ILE SER ILE LYS PHE ASN ASP GLU VAL LYS HIS ILE SEQRES 6 A 118 LYS VAL VAL GLU LYS ASP ASN TRP ILE HIS ILE THR GLU SEQRES 7 A 118 ALA LYS LYS PHE ASP SER LEU LEU GLU LEU VAL GLU TYR SEQRES 8 A 118 TYR GLN CYS HIS SER LEU LYS GLU SER PHE LYS GLN LEU SEQRES 9 A 118 ASP THR THR LEU LYS TYR PRO TYR SER GLY PRO SER SER SEQRES 10 A 118 GLY HELIX 1 1 ASP A 12 TYR A 16 5 5 HELIX 2 2 GLU A 24 HIS A 35 1 12 HELIX 3 3 SER A 84 GLN A 93 1 10 SHEET 1 A 5 PHE A 19 GLY A 21 0 SHEET 2 A 5 TYR A 40 ARG A 43 1 O ILE A 42 N ALA A 20 SHEET 3 A 5 PHE A 52 LYS A 57 -1 O ALA A 53 N ARG A 43 SHEET 4 A 5 VAL A 62 LYS A 70 -1 O ILE A 65 N ILE A 54 SHEET 5 A 5 TRP A 73 HIS A 75 -1 O HIS A 75 N VAL A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20