HEADER TRANSFERASE 22-MAR-06 2DH4 TITLE GERANYLGERANYL PYROPHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YPL069C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GERANYLGERANYL PYROPHOSPHATE SYNTHASE; COMPND 5 EC: 2.5.1.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GGPPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 XA/LIC KEYWDS ALPHA HELIX, PRENYL TRANSFERASE, PYROPHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR T.-H.CHANG,R.-T.GUO,T.-P.KO,A.H.WANG,P.-H.LIANG REVDAT 3 24-FEB-09 2DH4 1 VERSN REVDAT 2 06-JUN-06 2DH4 1 JRNL REVDAT 1 04-APR-06 2DH4 0 JRNL AUTH T.-H.CHANG,R.-T.GUO,T.-P.KO,A.H.WANG,P.-H.LIANG JRNL TITL CRYSTAL STRUCTURE OF TYPE-III GERANYLGERANYL JRNL TITL 2 PYROPHOSPHATE SYNTHASE FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE AND THE MECHANISM OF PRODUCT CHAIN JRNL TITL 4 LENGTH DETERMINATION. JRNL REF J.BIOL.CHEM. V. 281 14991 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16554305 JRNL DOI 10.1074/JBC.M512886200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 47348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2373 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 184 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.051 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.66 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DH4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-05; 21-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; NSRRC REMARK 200 BEAMLINE : BL12B2; BL17B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332, 0.9799, 0.9796, REMARK 200 0.9537; 1.1274 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MAR SCANNER REMARK 200 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD WITH DATA COLLECTED REMARK 200 ON SE-MET CRYSTAL AT 0.9796 A. REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM TRIS-HCL, 150MM NACL, 0.1% REMARK 280 TRITON X-100, 80MM NA-ACETATE, 145MM AMMONIUM SULPHATE, 13% REMARK 280 PEG 4000, 8% PROPANEDIOL , PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.88400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.16550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.88400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.16550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT AND BIOLOGICAL UNIT IS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 315 REMARK 465 LEU A 316 REMARK 465 ALA A 317 REMARK 465 SER A 318 REMARK 465 HIS A 319 REMARK 465 SER A 320 REMARK 465 ASP A 321 REMARK 465 THR A 322 REMARK 465 ALA A 323 REMARK 465 THR A 324 REMARK 465 ASN A 325 REMARK 465 LEU A 326 REMARK 465 HIS A 327 REMARK 465 MET B 1 REMARK 465 ASP B 315 REMARK 465 LEU B 316 REMARK 465 ALA B 317 REMARK 465 SER B 318 REMARK 465 HIS B 319 REMARK 465 SER B 320 REMARK 465 ASP B 321 REMARK 465 THR B 322 REMARK 465 ALA B 323 REMARK 465 THR B 324 REMARK 465 ASN B 325 REMARK 465 LEU B 326 REMARK 465 HIS B 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 80 O HOH A 368 2.05 REMARK 500 OXT LEU B 340 O HOH B 584 2.06 REMARK 500 O HOH A 497 O HOH B 430 2.15 REMARK 500 OD1 ASN A 24 O HOH A 346 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 193 -94.47 -34.24 REMARK 500 HIS A 195 32.65 -74.14 REMARK 500 SER A 225 123.94 -175.44 REMARK 500 ASN A 310 49.91 38.64 REMARK 500 SER B 192 127.05 -38.71 REMARK 500 SER B 193 -89.32 -41.04 REMARK 500 HIS B 195 28.71 -65.70 REMARK 500 SER B 225 124.82 179.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 32 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 351 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A 468 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B 475 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH B 477 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH B 514 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH B 519 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 521 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 553 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH A 554 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 587 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 589 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH B 596 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A 600 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH B 610 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A 613 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH B 614 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH B 615 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH B 616 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 621 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A 625 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A 627 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 635 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 636 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH A 638 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 341 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 370 O REMARK 620 2 HOH A 368 O 88.2 REMARK 620 3 HOH A 371 O 94.3 114.5 REMARK 620 4 HOH A 373 O 108.3 129.0 112.0 REMARK 620 5 ASP A 80 OD2 157.9 70.9 100.8 81.0 REMARK 620 6 ASP A 84 OD2 79.2 56.5 168.6 79.1 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 341 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 80 OD1 REMARK 620 2 ASP B 84 OD2 81.3 REMARK 620 3 HOH B 386 O 106.1 172.1 REMARK 620 4 HOH B 471 O 77.3 69.5 114.4 REMARK 620 5 HOH B 385 O 78.6 63.0 115.1 129.1 REMARK 620 6 HOH B 440 O 161.6 80.5 92.0 98.3 91.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 341 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 341 DBREF 2DH4 A 6 340 UNP Q12051 GGPPS_YEAST 1 335 DBREF 2DH4 B 6 340 UNP Q12051 GGPPS_YEAST 1 335 SEQADV 2DH4 MET A 1 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 THR A 2 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 LYS A 3 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 ASN A 4 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 LYS A 5 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 MET B 1 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 THR B 2 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 LYS B 3 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 ASN B 4 UNP Q12051 CLONING ARTIFACT SEQADV 2DH4 LYS B 5 UNP Q12051 CLONING ARTIFACT SEQRES 1 A 340 MET THR LYS ASN LYS MET GLU ALA LYS ILE ASP GLU LEU SEQRES 2 A 340 ILE ASN ASN ASP PRO VAL TRP SER SER GLN ASN GLU SER SEQRES 3 A 340 LEU ILE SER LYS PRO TYR ASN HIS ILE LEU LEU LYS PRO SEQRES 4 A 340 GLY LYS ASN PHE ARG LEU ASN LEU ILE VAL GLN ILE ASN SEQRES 5 A 340 ARG VAL MET ASN LEU PRO LYS ASP GLN LEU ALA ILE VAL SEQRES 6 A 340 SER GLN ILE VAL GLU LEU LEU HIS ASN SER SER LEU LEU SEQRES 7 A 340 ILE ASP ASP ILE GLU ASP ASN ALA PRO LEU ARG ARG GLY SEQRES 8 A 340 GLN THR THR SER HIS LEU ILE PHE GLY VAL PRO SER THR SEQRES 9 A 340 ILE ASN THR ALA ASN TYR MET TYR PHE ARG ALA MET GLN SEQRES 10 A 340 LEU VAL SER GLN LEU THR THR LYS GLU PRO LEU TYR HIS SEQRES 11 A 340 ASN LEU ILE THR ILE PHE ASN GLU GLU LEU ILE ASN LEU SEQRES 12 A 340 HIS ARG GLY GLN GLY LEU ASP ILE TYR TRP ARG ASP PHE SEQRES 13 A 340 LEU PRO GLU ILE ILE PRO THR GLN GLU MET TYR LEU ASN SEQRES 14 A 340 MET VAL MET ASN LYS THR GLY GLY LEU PHE ARG LEU THR SEQRES 15 A 340 LEU ARG LEU MET GLU ALA LEU SER PRO SER SER HIS HIS SEQRES 16 A 340 GLY HIS SER LEU VAL PRO PHE ILE ASN LEU LEU GLY ILE SEQRES 17 A 340 ILE TYR GLN ILE ARG ASP ASP TYR LEU ASN LEU LYS ASP SEQRES 18 A 340 PHE GLN MET SER SER GLU LYS GLY PHE ALA GLU ASP ILE SEQRES 19 A 340 THR GLU GLY LYS LEU SER PHE PRO ILE VAL HIS ALA LEU SEQRES 20 A 340 ASN PHE THR LYS THR LYS GLY GLN THR GLU GLN HIS ASN SEQRES 21 A 340 GLU ILE LEU ARG ILE LEU LEU LEU ARG THR SER ASP LYS SEQRES 22 A 340 ASP ILE LYS LEU LYS LEU ILE GLN ILE LEU GLU PHE ASP SEQRES 23 A 340 THR ASN SER LEU ALA TYR THR LYS ASN PHE ILE ASN GLN SEQRES 24 A 340 LEU VAL ASN MET ILE LYS ASN ASP ASN GLU ASN LYS TYR SEQRES 25 A 340 LEU PRO ASP LEU ALA SER HIS SER ASP THR ALA THR ASN SEQRES 26 A 340 LEU HIS ASP GLU LEU LEU TYR ILE ILE ASP HIS LEU SER SEQRES 27 A 340 GLU LEU SEQRES 1 B 340 MET THR LYS ASN LYS MET GLU ALA LYS ILE ASP GLU LEU SEQRES 2 B 340 ILE ASN ASN ASP PRO VAL TRP SER SER GLN ASN GLU SER SEQRES 3 B 340 LEU ILE SER LYS PRO TYR ASN HIS ILE LEU LEU LYS PRO SEQRES 4 B 340 GLY LYS ASN PHE ARG LEU ASN LEU ILE VAL GLN ILE ASN SEQRES 5 B 340 ARG VAL MET ASN LEU PRO LYS ASP GLN LEU ALA ILE VAL SEQRES 6 B 340 SER GLN ILE VAL GLU LEU LEU HIS ASN SER SER LEU LEU SEQRES 7 B 340 ILE ASP ASP ILE GLU ASP ASN ALA PRO LEU ARG ARG GLY SEQRES 8 B 340 GLN THR THR SER HIS LEU ILE PHE GLY VAL PRO SER THR SEQRES 9 B 340 ILE ASN THR ALA ASN TYR MET TYR PHE ARG ALA MET GLN SEQRES 10 B 340 LEU VAL SER GLN LEU THR THR LYS GLU PRO LEU TYR HIS SEQRES 11 B 340 ASN LEU ILE THR ILE PHE ASN GLU GLU LEU ILE ASN LEU SEQRES 12 B 340 HIS ARG GLY GLN GLY LEU ASP ILE TYR TRP ARG ASP PHE SEQRES 13 B 340 LEU PRO GLU ILE ILE PRO THR GLN GLU MET TYR LEU ASN SEQRES 14 B 340 MET VAL MET ASN LYS THR GLY GLY LEU PHE ARG LEU THR SEQRES 15 B 340 LEU ARG LEU MET GLU ALA LEU SER PRO SER SER HIS HIS SEQRES 16 B 340 GLY HIS SER LEU VAL PRO PHE ILE ASN LEU LEU GLY ILE SEQRES 17 B 340 ILE TYR GLN ILE ARG ASP ASP TYR LEU ASN LEU LYS ASP SEQRES 18 B 340 PHE GLN MET SER SER GLU LYS GLY PHE ALA GLU ASP ILE SEQRES 19 B 340 THR GLU GLY LYS LEU SER PHE PRO ILE VAL HIS ALA LEU SEQRES 20 B 340 ASN PHE THR LYS THR LYS GLY GLN THR GLU GLN HIS ASN SEQRES 21 B 340 GLU ILE LEU ARG ILE LEU LEU LEU ARG THR SER ASP LYS SEQRES 22 B 340 ASP ILE LYS LEU LYS LEU ILE GLN ILE LEU GLU PHE ASP SEQRES 23 B 340 THR ASN SER LEU ALA TYR THR LYS ASN PHE ILE ASN GLN SEQRES 24 B 340 LEU VAL ASN MET ILE LYS ASN ASP ASN GLU ASN LYS TYR SEQRES 25 B 340 LEU PRO ASP LEU ALA SER HIS SER ASP THR ALA THR ASN SEQRES 26 B 340 LEU HIS ASP GLU LEU LEU TYR ILE ILE ASP HIS LEU SER SEQRES 27 B 340 GLU LEU HET MG A 341 1 HET MG B 341 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *578(H2 O) HELIX 1 1 THR A 2 ASN A 15 1 14 HELIX 2 2 SER A 21 LEU A 36 1 16 HELIX 3 3 GLY A 40 ASN A 56 1 17 HELIX 4 4 PRO A 58 ASP A 84 1 27 HELIX 5 5 THR A 94 GLY A 100 1 7 HELIX 6 6 GLY A 100 SER A 120 1 21 HELIX 7 7 LYS A 125 PHE A 156 1 32 HELIX 8 8 THR A 163 THR A 175 1 13 HELIX 9 9 THR A 175 SER A 190 1 16 HELIX 10 10 LEU A 199 SER A 225 1 27 HELIX 11 11 ALA A 231 GLY A 237 1 7 HELIX 12 12 SER A 240 GLY A 254 1 15 HELIX 13 13 GLN A 255 ARG A 269 1 15 HELIX 14 14 ASP A 272 ASP A 286 1 15 HELIX 15 15 ASN A 288 ASN A 306 1 19 HELIX 16 16 ASP A 328 HIS A 336 1 9 HELIX 17 17 LEU A 337 LEU A 340 5 4 HELIX 18 18 THR B 2 ASN B 15 1 14 HELIX 19 19 SER B 21 LEU B 37 1 17 HELIX 20 20 GLY B 40 ASN B 56 1 17 HELIX 21 21 PRO B 58 ASP B 84 1 27 HELIX 22 22 THR B 94 GLY B 100 1 7 HELIX 23 23 GLY B 100 SER B 120 1 21 HELIX 24 24 LYS B 125 LEU B 157 1 33 HELIX 25 25 THR B 163 THR B 175 1 13 HELIX 26 26 THR B 175 SER B 190 1 16 HELIX 27 27 LEU B 199 MET B 224 1 26 HELIX 28 28 ALA B 231 GLY B 237 1 7 HELIX 29 29 SER B 240 LYS B 253 1 14 HELIX 30 30 GLN B 255 ARG B 269 1 15 HELIX 31 31 ASP B 272 ASP B 286 1 15 HELIX 32 32 ASN B 288 ASN B 306 1 19 HELIX 33 33 ASP B 328 HIS B 336 1 9 HELIX 34 34 LEU B 337 LEU B 340 5 4 SHEET 1 A 2 LEU A 88 ARG A 89 0 SHEET 2 A 2 GLN A 92 THR A 93 -1 O GLN A 92 N ARG A 89 SHEET 1 B 2 LEU B 88 ARG B 89 0 SHEET 2 B 2 GLN B 92 THR B 93 -1 O GLN B 92 N ARG B 89 LINK MG MG A 341 O HOH A 370 1555 1555 2.50 LINK MG MG A 341 O HOH A 368 1555 1555 3.08 LINK MG MG A 341 O HOH A 371 1555 1555 3.07 LINK MG MG A 341 O HOH A 373 1555 1555 2.12 LINK MG MG A 341 OD2 ASP A 80 1555 1555 2.06 LINK MG MG A 341 OD2 ASP A 84 1555 1555 2.00 LINK MG MG B 341 OD1 ASP B 80 1555 1555 2.03 LINK MG MG B 341 OD2 ASP B 84 1555 1555 2.06 LINK MG MG B 341 O HOH B 386 1555 1555 2.80 LINK MG MG B 341 O HOH B 471 1555 1555 2.30 LINK MG MG B 341 O HOH B 385 1555 1555 3.04 LINK MG MG B 341 O HOH B 440 1555 1555 2.33 CISPEP 1 LEU A 157 PRO A 158 0 0.44 CISPEP 2 LEU B 157 PRO B 158 0 0.33 SITE 1 AC1 6 ASP A 80 ASP A 84 HOH A 368 HOH A 370 SITE 2 AC1 6 HOH A 371 HOH A 373 SITE 1 AC2 6 ASP B 80 ASP B 84 HOH B 385 HOH B 386 SITE 2 AC2 6 HOH B 440 HOH B 471 CRYST1 48.747 116.331 129.768 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007706 0.00000