HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-05 2DAI TITLE SOLUTION STRUCTURE OF THE FIRST UBA DOMAIN IN THE HUMAN UBIQUITIN TITLE 2 ASSOCIATED DOMAIN CONTAINING 1 (UBADC1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN ASSOCIATED DOMAIN CONTAINING 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: UBADC1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBADC1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050704-09; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS UBIQUITIN ASSOCIATED DOMAIN CONTAINING 1, UBADC1, UBA DOMAIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ZHAO,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DAI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DAI 1 VERSN REVDAT 1 14-JUN-06 2DAI 0 JRNL AUTH C.ZHAO,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST UBA DOMAIN IN THE HUMAN JRNL TITL 2 UBIQUITIN ASSOCIATED DOMAIN CONTAINING 1 (UBADC1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.8 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DAI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025185. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.03MM UBA DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 43 H THR A 47 1.49 REMARK 500 O LEU A 50 H MET A 55 1.51 REMARK 500 O GLU A 62 H GLU A 66 1.57 REMARK 500 O ARG A 45 H ALA A 49 1.57 REMARK 500 O ALA A 60 H LEU A 64 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 170.30 179.79 REMARK 500 1 SER A 5 -58.35 -178.45 REMARK 500 1 ASP A 8 -55.27 -164.04 REMARK 500 1 VAL A 10 61.71 -174.66 REMARK 500 1 ASN A 17 107.66 57.25 REMARK 500 1 ALA A 18 89.85 -163.08 REMARK 500 1 LEU A 20 -113.50 -142.17 REMARK 500 1 ASP A 25 175.26 67.14 REMARK 500 1 GLU A 26 167.40 59.90 REMARK 500 1 ARG A 27 160.77 -40.61 REMARK 500 1 HIS A 54 40.19 38.50 REMARK 500 1 ASP A 74 111.94 60.33 REMARK 500 1 SER A 82 79.17 41.20 REMARK 500 2 SER A 2 152.60 178.57 REMARK 500 2 SER A 3 168.78 179.47 REMARK 500 2 LEU A 20 -114.15 -141.92 REMARK 500 2 ASP A 21 109.51 68.07 REMARK 500 2 GLU A 26 127.19 61.52 REMARK 500 2 ARG A 27 155.53 59.97 REMARK 500 2 HIS A 54 46.01 38.38 REMARK 500 2 ASP A 74 169.25 59.55 REMARK 500 2 SER A 78 -49.99 -136.31 REMARK 500 2 SER A 81 -54.48 -126.11 REMARK 500 3 SER A 2 170.28 179.45 REMARK 500 3 SER A 5 141.49 -170.93 REMARK 500 3 GLU A 11 103.17 -173.32 REMARK 500 3 PHE A 13 54.51 -154.73 REMARK 500 3 ASN A 17 -59.58 -158.79 REMARK 500 3 ALA A 18 83.20 45.22 REMARK 500 3 LEU A 20 -134.62 -136.42 REMARK 500 3 GLU A 22 85.67 40.00 REMARK 500 3 GLU A 26 -51.82 -172.84 REMARK 500 3 HIS A 54 45.51 38.49 REMARK 500 3 ASP A 74 117.03 -175.17 REMARK 500 3 SER A 82 82.72 42.75 REMARK 500 4 SER A 2 152.69 179.28 REMARK 500 4 SER A 3 -58.21 -160.42 REMARK 500 4 VAL A 10 130.84 62.77 REMARK 500 4 LEU A 12 -76.15 -166.53 REMARK 500 4 PHE A 13 168.94 60.00 REMARK 500 4 LYS A 14 147.82 -175.42 REMARK 500 4 LYS A 15 128.08 -173.26 REMARK 500 4 ALA A 16 162.36 176.93 REMARK 500 4 ASN A 17 116.67 179.58 REMARK 500 4 ALA A 18 128.45 -172.86 REMARK 500 4 MET A 19 102.57 -171.29 REMARK 500 4 LEU A 20 100.49 -163.91 REMARK 500 4 ASP A 21 165.87 177.50 REMARK 500 4 GLU A 22 103.70 56.71 REMARK 500 4 GLU A 26 -64.70 -175.29 REMARK 500 REMARK 500 THIS ENTRY HAS 274 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002004830.1 RELATED DB: TARGETDB DBREF 2DAI A 8 77 UNP Q9BSL1 UBDC1_HUMAN 172 243 SEQADV 2DAI GLY A 1 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI SER A 2 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI SER A 3 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI GLY A 4 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI SER A 5 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI SER A 6 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI GLY A 7 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI SER A 78 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI GLY A 79 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI PRO A 80 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI SER A 81 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI SER A 82 UNP Q9BSL1 CLONING ARTIFACT SEQADV 2DAI GLY A 83 UNP Q9BSL1 CLONING ARTIFACT SEQRES 1 A 83 GLY SER SER GLY SER SER GLY ASP ALA VAL GLU LEU PHE SEQRES 2 A 83 LYS LYS ALA ASN ALA MET LEU ASP GLU ASP GLU ASP GLU SEQRES 3 A 83 ARG VAL ASP GLU ALA ALA LEU ARG GLN LEU THR GLU MET SEQRES 4 A 83 GLY PHE PRO GLU ASN ARG ALA THR LYS ALA LEU GLN LEU SEQRES 5 A 83 ASN HIS MET SER VAL PRO GLN ALA MET GLU TRP LEU ILE SEQRES 6 A 83 GLU HIS ALA GLU ASP PRO THR ILE ASP THR PRO LEU SER SEQRES 7 A 83 GLY PRO SER SER GLY HELIX 1 1 ASP A 29 GLY A 40 1 12 HELIX 2 2 PRO A 42 ASN A 53 1 12 HELIX 3 3 SER A 56 HIS A 67 1 12 HELIX 4 4 ALA A 68 ASP A 70 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20