HEADER GENE REGULATION 20-MAY-05 2CRA TITLE SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HUMAN HOMEO BOX B13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN HOX-B13; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX (RESIDUES 1-70); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOXB13; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040607-07; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS DNA-BINDING, TRANSCRIPTION REGULATION, HELIX-TURN-HELIX, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SEIMIYA,F.HAYASHI,T.NAGASHIMA,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CRA 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CRA 1 VERSN REVDAT 1 20-NOV-05 2CRA 0 JRNL AUTH K.SEIMIYA,F.HAYASHI,T.NAGASHIMA,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HUMAN HOMEO BOX JRNL TITL 2 B13 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CRA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024537. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.06MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9295, REMARK 210 CYANA 2.0 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -47.84 -130.14 REMARK 500 1 ARG A 11 -174.17 -64.90 REMARK 500 1 TYR A 14 110.93 64.05 REMARK 500 1 ALA A 43 -60.35 -90.03 REMARK 500 2 SER A 5 136.27 -171.73 REMARK 500 2 SER A 6 -64.73 -91.28 REMARK 500 2 ARG A 8 174.02 -54.72 REMARK 500 2 TYR A 14 110.28 64.03 REMARK 500 2 ASN A 29 114.07 -169.33 REMARK 500 2 PRO A 67 -177.10 -69.74 REMARK 500 3 TYR A 14 111.45 64.12 REMARK 500 4 SER A 2 -52.52 -126.23 REMARK 500 4 TYR A 14 108.25 63.65 REMARK 500 5 SER A 6 61.83 -119.19 REMARK 500 5 TYR A 14 110.52 63.96 REMARK 500 6 ARG A 8 94.64 -68.05 REMARK 500 6 LYS A 10 104.50 -58.18 REMARK 500 6 TYR A 14 111.49 64.12 REMARK 500 6 ASN A 29 115.90 -165.58 REMARK 500 7 PRO A 13 -170.00 -79.75 REMARK 500 7 TYR A 14 111.66 64.27 REMARK 500 7 ASN A 29 125.73 -172.11 REMARK 500 8 SER A 2 146.10 -170.26 REMARK 500 8 SER A 3 146.49 -170.93 REMARK 500 8 PRO A 13 -169.95 -79.91 REMARK 500 8 TYR A 14 106.87 63.26 REMARK 500 8 SER A 69 -51.41 -128.85 REMARK 500 9 LYS A 10 104.08 -53.49 REMARK 500 9 TYR A 14 114.14 65.19 REMARK 500 9 ILE A 32 -176.93 -69.34 REMARK 500 10 ARG A 11 -169.87 -62.10 REMARK 500 10 TYR A 14 110.50 63.94 REMARK 500 10 ASN A 29 111.43 -170.22 REMARK 500 11 ARG A 8 -175.18 -59.54 REMARK 500 11 ARG A 11 -169.84 -124.92 REMARK 500 11 TYR A 14 109.89 64.17 REMARK 500 12 LYS A 10 77.80 -100.55 REMARK 500 12 PRO A 13 -169.77 -79.29 REMARK 500 12 TYR A 14 108.06 63.80 REMARK 500 12 SER A 15 -176.12 -65.23 REMARK 500 12 PRO A 67 85.96 -69.74 REMARK 500 13 TYR A 14 110.35 64.14 REMARK 500 14 SER A 2 61.36 -105.26 REMARK 500 14 TYR A 14 111.14 64.15 REMARK 500 15 ARG A 8 78.88 -102.88 REMARK 500 15 TYR A 14 113.23 64.73 REMARK 500 16 TYR A 14 110.31 64.17 REMARK 500 16 ASN A 29 108.13 -168.81 REMARK 500 17 TYR A 14 110.79 64.02 REMARK 500 18 TYR A 14 109.96 63.87 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001085.1 RELATED DB: TARGETDB DBREF 2CRA A 8 64 UNP Q92826 HXB13_HUMAN 217 273 SEQADV 2CRA GLY A 1 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA SER A 2 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA SER A 3 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA GLY A 4 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA SER A 5 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA SER A 6 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA GLY A 7 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA SER A 65 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA GLY A 66 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA PRO A 67 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA SER A 68 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA SER A 69 UNP Q92826 CLONING ARTIFACT SEQADV 2CRA GLY A 70 UNP Q92826 CLONING ARTIFACT SEQRES 1 A 70 GLY SER SER GLY SER SER GLY ARG LYS LYS ARG ILE PRO SEQRES 2 A 70 TYR SER LYS GLY GLN LEU ARG GLU LEU GLU ARG GLU TYR SEQRES 3 A 70 ALA ALA ASN LYS PHE ILE THR LYS ASP LYS ARG ARG LYS SEQRES 4 A 70 ILE SER ALA ALA THR SER LEU SER GLU ARG GLN ILE THR SEQRES 5 A 70 ILE TRP PHE GLN ASN ARG ARG VAL LYS GLU LYS LYS SER SEQRES 6 A 70 GLY PRO SER SER GLY HELIX 1 1 SER A 15 ASN A 29 1 15 HELIX 2 2 THR A 33 THR A 44 1 12 HELIX 3 3 SER A 47 LYS A 61 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20