HEADER HYDROLASE(O-GLYCOSYL) 10-AUG-92 2BAT TITLE THE STRUCTURE OF THE COMPLEX BETWEEN INFLUENZA VIRUS NEURAMINIDASE AND TITLE 2 SIALIC ACID, THE VIRAL RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE N2; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/TOKYO/3/1967(H2N2)); SOURCE 3 ORGANISM_TAXID: 380960; SOURCE 4 STRAIN: A/TOKYO/3/1967(H2N2) KEYWDS HYDROLASE(O-GLYCOSYL) EXPDTA X-RAY DIFFRACTION AUTHOR J.N.VARGHESE,P.M.COLMAN REVDAT 7 29-JUL-20 2BAT 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 13-JUL-11 2BAT 1 VERSN REVDAT 5 09-MAR-11 2BAT 1 REMARK REVDAT 4 25-AUG-09 2BAT 1 SOURCE REVDAT 3 24-FEB-09 2BAT 1 VERSN REVDAT 2 01-APR-03 2BAT 1 JRNL REVDAT 1 31-JAN-94 2BAT 0 JRNL AUTH J.N.VARGHESE,J.L.MCKIMM-BRESCHKIN,J.B.CALDWELL,A.A.KORTT, JRNL AUTH 2 P.M.COLMAN JRNL TITL THE STRUCTURE OF THE COMPLEX BETWEEN INFLUENZA VIRUS JRNL TITL 2 NEURAMINIDASE AND SIALIC ACID, THE VIRAL RECEPTOR. JRNL REF PROTEINS V. 14 327 1992 JRNL REFN ISSN 0887-3585 JRNL PMID 1438172 JRNL DOI 10.1002/PROT.340140302 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.N.VARGHESE,P.M.COLMAN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE NEURAMINIDASE OF REMARK 1 TITL 2 INFLUENZA VIRUS A(SLASH)TOKYO(SLASH)3(SLASH)67 AT 2.2 REMARK 1 TITL 3 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 221 473 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.W.WARD,T.C.ELLEMAN,A.A.AZAD REMARK 1 TITL AMINO ACID SEQUENCE OF THE PRONASE-RELEASED HEADS OF REMARK 1 TITL 2 NEURAMINIDASE SUBTYPE N2 FROM THE ASIAN STRAIN REMARK 1 TITL 3 A(SLASH)TOKYO(SLASH)3(SLASH)67 OF INFLUENZA VIRUS REMARK 1 REF BIOCHEM.J. V. 207 91 1982 REMARK 1 REFN ISSN 0264-6021 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 214 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 3.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.80000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.50000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 69.80000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 95.50000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.80000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 95.50000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 69.80000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 95.50000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.80000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 95.50000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.80000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 95.50000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 69.80000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 95.50000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.80000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 95.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 30240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 139.60000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 139.60000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 139.60000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 139.60000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG B 5 O5 NGK B 6 2.00 REMARK 500 O6 NAG B 1 O5 FUL B 7 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 701X O HOH A 702X 16665 1.56 REMARK 500 O HOH A 707X O HOH A 708X 16665 1.71 REMARK 500 O HOH A 698X O HOH A 707X 16665 1.75 REMARK 500 O HOH A 697X O HOH A 698X 16665 1.78 REMARK 500 O ASN A 336 O HOH A 697X 16665 2.00 REMARK 500 O HOH A 698X O HOH A 698X 16665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 144 NE2 HIS A 144 CD2 -0.075 REMARK 500 HIS A 150 NE2 HIS A 150 CD2 -0.070 REMARK 500 HIS A 184 NE2 HIS A 184 CD2 -0.070 REMARK 500 HIS A 274 NE2 HIS A 274 CD2 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 87 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 87 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 115 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 115 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 121 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 CYS A 124 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 CYS A 124 N - CA - CB ANGL. DEV. = -20.2 DEGREES REMARK 500 CYS A 124 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 CYS A 129 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 TYR A 130 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 VAL A 149 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 172 CG - CD - NE ANGL. DEV. = -15.2 DEGREES REMARK 500 TRP A 178 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 178 CB - CG - CD1 ANGL. DEV. = -9.8 DEGREES REMARK 500 TRP A 178 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP A 178 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 CYS A 183 CA - CB - SG ANGL. DEV. = 10.1 DEGREES REMARK 500 TRP A 189 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 189 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 210 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP A 218 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 218 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 224 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU A 229 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 VAL A 239 CG1 - CB - CG2 ANGL. DEV. = -11.0 DEGREES REMARK 500 MET A 241 CG - SD - CE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP A 295 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP A 295 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 GLY A 297 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP A 309 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 338 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TRP A 352 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 352 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 361 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 361 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 361 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 364 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 364 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LYS A 378 CB - CG - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 TRP A 383 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A 383 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 394 CG - CD - NE ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 63 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 87 27.66 42.37 REMARK 500 ALA A 177 136.54 -170.99 REMARK 500 SER A 181 124.95 -171.46 REMARK 500 ASN A 200 50.39 -151.42 REMARK 500 ILE A 222 84.19 45.98 REMARK 500 GLN A 226 -64.16 -28.94 REMARK 500 GLU A 227 30.22 76.49 REMARK 500 ASN A 234 19.05 57.92 REMARK 500 GLU A 277 53.12 33.02 REMARK 500 TYR A 284 125.66 -29.06 REMARK 500 CYS A 291 -162.05 -119.72 REMARK 500 TRP A 295 -72.30 -105.11 REMARK 500 SER A 319 126.67 -32.75 REMARK 500 VAL A 322 113.47 68.05 REMARK 500 ASP A 329 146.83 136.30 REMARK 500 CYS A 337 -13.42 67.64 REMARK 500 ARG A 344 52.48 38.38 REMARK 500 GLN A 347 -176.63 72.97 REMARK 500 PRO A 386 126.52 -37.32 REMARK 500 SER A 404 -139.93 -124.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 BMA B 3 REMARK 615 MAN B 4 REMARK 615 NAG B 5 REMARK 615 NGK B 6 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 79.4 REMARK 620 3 ASP A 324 OD2 77.0 79.1 REMARK 620 4 GLY A 345 O 99.0 83.5 162.6 REMARK 620 5 GLN A 347 O 96.6 174.6 103.6 93.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NN2 RELATED DB: PDB REMARK 900 NATIVE REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: NRAM_IATOK REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 THR 420 ARG 420 REMARK 999 REMARK 999 THE DEPOSITORS BELIEVE THAT THE SWISS-PROT ENTRY IS REMARK 999 INCORRECT. DBREF 2BAT A 82 469 UNP P06820 NRAM_IATOK 82 469 SEQRES 1 A 388 VAL GLU TYR ARG ASN TRP SER LYS PRO GLN CYS GLN ILE SEQRES 2 A 388 THR GLY PHE ALA PRO PHE SER LYS ASP ASN SER ILE ARG SEQRES 3 A 388 LEU SER ALA GLY GLY ASP ILE TRP VAL THR ARG GLU PRO SEQRES 4 A 388 TYR VAL SER CYS ASP PRO VAL LYS CYS TYR GLN PHE ALA SEQRES 5 A 388 LEU GLY GLN GLY THR THR LEU ASP ASN LYS HIS SER ASN SEQRES 6 A 388 ASP THR VAL HIS ASP ARG ILE PRO HIS ARG THR LEU LEU SEQRES 7 A 388 MET ASN GLU LEU GLY VAL PRO PHE HIS LEU GLY THR ARG SEQRES 8 A 388 GLN VAL CYS ILE ALA TRP SER SER SER SER CYS HIS ASP SEQRES 9 A 388 GLY LYS ALA TRP LEU HIS VAL CYS ILE THR GLY ASP ASP SEQRES 10 A 388 LYS ASN ALA THR ALA SER PHE ILE TYR ASP GLY ARG LEU SEQRES 11 A 388 VAL ASP SER ILE GLY SER TRP SER GLN ASN ILE LEU ARG SEQRES 12 A 388 THR GLN GLU SER GLU CYS VAL CYS ILE ASN GLY THR CYS SEQRES 13 A 388 THR VAL VAL MET THR ASP GLY SER ALA SER GLY ARG ALA SEQRES 14 A 388 ASP THR ARG ILE LEU PHE ILE GLU GLU GLY LYS ILE VAL SEQRES 15 A 388 HIS ILE SER PRO LEU ALA GLY SER ALA GLN HIS VAL GLU SEQRES 16 A 388 GLU CYS SER CYS TYR PRO ARG TYR PRO GLY VAL ARG CYS SEQRES 17 A 388 ILE CYS ARG ASP ASN TRP LYS GLY SER ASN ARG PRO VAL SEQRES 18 A 388 VAL ASP ILE ASN MET GLU ASP TYR SER ILE ASP SER SER SEQRES 19 A 388 TYR VAL CYS SER GLY LEU VAL GLY ASP THR PRO ARG ASN SEQRES 20 A 388 ASP ASP ARG SER SER ASN SER ASN CYS ARG ASN PRO ASN SEQRES 21 A 388 ASN GLU ARG GLY THR GLN GLY VAL LYS GLY TRP ALA PHE SEQRES 22 A 388 ASP ASN GLY ASN ASP LEU TRP MET GLY ARG THR ILE SER SEQRES 23 A 388 LYS ASP LEU ARG SER GLY TYR GLU THR PHE LYS VAL ILE SEQRES 24 A 388 GLY GLY TRP SER THR PRO ASN SER LYS SER GLN ILE ASN SEQRES 25 A 388 ARG GLN VAL ILE VAL ASP SER ASP ASN ARG SER GLY TYR SEQRES 26 A 388 SER GLY ILE PHE SER VAL GLU GLY LYS SER CYS ILE ASN SEQRES 27 A 388 ARG CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG LYS GLN SEQRES 28 A 388 GLU THR ARG VAL TRP TRP THR SER ASN SER ILE VAL VAL SEQRES 29 A 388 PHE CYS GLY THR SER GLY THR TYR GLY THR GLY SER TRP SEQRES 30 A 388 PRO ASP GLY ALA ASN ILE ASN PHE MET PRO ILE MODRES 2BAT ASN A 86 ASN GLYCOSYLATION SITE MODRES 2BAT ASN A 146 ASN GLYCOSYLATION SITE MODRES 2BAT ASN A 200 ASN GLYCOSYLATION SITE MODRES 2BAT ASN A 234 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET NGK B 6 18 HET FUL B 7 10 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET NAG A 470A 14 HET NAG A 484A 14 HET SIA A 600 21 HET CA A 601 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NGK 2-ACETAMIDO-2-DEOXY-4-O-SULFO-ALPHA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM CA CALCIUM ION HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 4(C6 H12 O6) FORMUL 2 NGK C8 H15 N O9 S FORMUL 2 FUL C6 H12 O5 FORMUL 6 SIA C11 H19 N O9 FORMUL 7 CA CA 2+ FORMUL 8 HOH *116(H2 O) HELIX 1 1 ASN A 104 SER A 109 1 6 HELIX 2 2 ALA A 110 GLY A 112 5 3 HELIX 3 3 ASN A 142 ASN A 146 5 5 HELIX 4 4 ASP A 197 ASN A 200 5 4 HELIX 5 5 ASP A 329 SER A 333 5 5 HELIX 6 6 ASN A 463 MET A 467 5 5 SHEET 1 A 4 GLY A 96 LYS A 102 0 SHEET 2 A 4 THR A 439 THR A 449 -1 N VAL A 445 O SER A 101 SHEET 3 A 4 ILE A 418 GLY A 429 -1 O ARG A 420 N GLY A 448 SHEET 4 A 4 SER A 407 GLU A 413 -1 O GLY A 408 N TYR A 423 SHEET 1 B 4 TRP A 115 CYS A 124 0 SHEET 2 B 4 CYS A 129 THR A 139 -1 N TYR A 130 O SER A 123 SHEET 3 B 4 THR A 157 GLU A 162 -1 O THR A 157 N GLY A 135 SHEET 4 B 4 ARG A 172 ILE A 176 -1 O ARG A 172 N MET A 160 SHEET 1 C 4 SER A 180 HIS A 184 0 SHEET 2 C 4 TRP A 189 THR A 195 -1 N LEU A 190 O CYS A 183 SHEET 3 C 4 THR A 202 TYR A 207 -1 N THR A 202 O THR A 195 SHEET 4 C 4 ARG A 210 GLY A 216 -1 O ARG A 210 N TYR A 207 SHEET 1 D 4 LYS A 261 PRO A 267 0 SHEET 2 D 4 ALA A 250 GLU A 258 -1 N ILE A 254 O SER A 266 SHEET 3 D 4 THR A 236 GLY A 244 -1 O CYS A 237 N ILE A 257 SHEET 4 D 4 ARG A 224 THR A 225 -1 N ARG A 224 O THR A 242 SHEET 1 E 4 LYS A 261 PRO A 267 0 SHEET 2 E 4 ALA A 250 GLU A 258 -1 N ILE A 254 O SER A 266 SHEET 3 E 4 THR A 236 GLY A 244 -1 O CYS A 237 N ILE A 257 SHEET 4 E 4 VAL A 231 ILE A 233 -1 O VAL A 231 N THR A 238 SHEET 1 F 4 GLU A 276 ARG A 283 0 SHEET 2 F 4 GLY A 286 ARG A 292 -1 N GLY A 286 O ARG A 283 SHEET 3 F 4 PRO A 301 ASN A 306 -1 O PRO A 301 N CYS A 291 SHEET 4 F 4 ILE A 312 TYR A 316 -1 O ASP A 313 N ASP A 304 SHEET 1 G 4 ALA A 353 ASN A 356 0 SHEET 2 G 4 ASP A 359 THR A 365 -1 N ASP A 359 O ASN A 356 SHEET 3 G 4 SER A 372 ILE A 380 -1 N GLU A 375 O ARG A 364 SHEET 4 G 4 SER A 390 ARG A 403 -1 O SER A 390 N ILE A 380 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.01 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.00 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.01 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.04 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.04 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.01 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.02 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.04 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.03 LINK ND2 ASN A 86 C1 NAG A 470A 1555 1555 1.45 LINK ND2 ASN A 146 C1 NAG B 1 1555 1555 1.47 LINK ND2 ASN A 200 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 234 C1 NAG A 484A 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.41 LINK O6 NAG B 1 C1 FUL B 7 1555 1555 1.48 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.43 LINK O4 MAN B 4 C1 NAG B 5 1555 1555 1.44 LINK O4 NAG B 5 C1 NGK B 6 1555 1555 1.48 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.41 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.40 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.46 LINK O2 MAN C 4 C1 MAN C 5 1555 1555 1.43 LINK O ASP A 293 CA CA A 601 1555 1555 2.33 LINK O GLY A 297 CA CA A 601 1555 1555 2.18 LINK OD2 ASP A 324 CA CA A 601 1555 1555 2.67 LINK O GLY A 345 CA CA A 601 1555 1555 2.21 LINK O GLN A 347 CA CA A 601 1555 1555 2.19 CISPEP 1 TYR A 284 PRO A 285 0 4.47 CISPEP 2 THR A 325 PRO A 326 0 -3.61 CISPEP 3 ARG A 430 LYS A 431 0 0.44 CRYST1 139.600 139.600 191.000 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005236 0.00000