HEADER ELECTRON TRANSPORT 15-MAY-05 1X5E TITLE THE SOLUTION STRUCTURE OF THE THIOREDOXIN-LIKE DOMAIN OF HUMAN TITLE 2 THIOREDOXIN-RELATED TRANSMEMBRANE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN DOMAIN CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIOREDOXIN LIKE DOMAIN; COMPND 5 SYNONYM: THIOREDOXIN-RELATED TRANSMEMBRANE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TXNDC; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041108-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TMX, THIOREDOXIN, TXNDC1, REDOX, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ELECTRON KEYWDS 4 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1X5E 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X5E 1 VERSN REVDAT 1 15-NOV-05 1X5E 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE THIOREDOXIN-LIKE DOMAIN OF JRNL TITL 2 HUMAN THIOREDOXIN-RELATED TRANSMEMBRANE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X5E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024400. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM THIOREDOXIN LIKE DOMAIN U REMARK 210 -15N,13C; 20MM D-TRIS HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.926, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 55 54.97 70.55 REMARK 500 1 THR A 64 -32.49 -131.58 REMARK 500 1 PHE A 104 -26.17 -38.76 REMARK 500 1 ILE A 105 -62.32 -99.35 REMARK 500 1 LYS A 108 32.60 34.53 REMARK 500 1 PRO A 115 -170.06 -69.80 REMARK 500 1 PRO A 123 83.57 -69.74 REMARK 500 1 SER A 125 42.21 -96.44 REMARK 500 2 SER A 2 126.67 -171.93 REMARK 500 2 PHE A 73 34.63 -83.88 REMARK 500 2 ILE A 74 49.90 32.68 REMARK 500 2 GLU A 88 170.91 -56.24 REMARK 500 2 TYR A 92 -70.17 -52.41 REMARK 500 2 ILE A 105 -63.77 -98.09 REMARK 500 2 SER A 117 -70.61 -130.94 REMARK 500 2 SER A 118 37.88 34.16 REMARK 500 2 PRO A 123 99.51 -69.79 REMARK 500 3 SER A 2 98.40 -46.65 REMARK 500 3 ILE A 74 123.98 -29.38 REMARK 500 3 ILE A 75 77.34 -119.05 REMARK 500 3 GLN A 93 74.81 -114.81 REMARK 500 3 SER A 117 152.22 -39.50 REMARK 500 3 SER A 118 135.11 -35.34 REMARK 500 3 SER A 121 117.37 -163.87 REMARK 500 4 SER A 5 134.89 -34.65 REMARK 500 4 GLU A 19 -36.43 -38.57 REMARK 500 4 PRO A 32 2.68 -69.69 REMARK 500 4 ALA A 48 -19.45 -47.59 REMARK 500 4 LEU A 69 -37.76 -39.93 REMARK 500 4 PHE A 73 32.34 -84.65 REMARK 500 4 ILE A 74 38.87 33.86 REMARK 500 4 GLN A 93 68.86 -118.03 REMARK 500 4 ILE A 105 -61.57 -91.57 REMARK 500 4 LYS A 108 42.30 35.17 REMARK 500 4 PRO A 115 -175.60 -69.73 REMARK 500 4 SER A 118 85.05 -63.53 REMARK 500 5 SER A 5 45.67 -97.66 REMARK 500 5 LEU A 69 -34.37 -39.87 REMARK 500 5 GLN A 93 49.40 -107.38 REMARK 500 5 ILE A 105 -60.36 -102.55 REMARK 500 5 LYS A 108 38.44 33.41 REMARK 500 5 SER A 117 -38.70 -130.85 REMARK 500 5 SER A 118 95.62 -50.95 REMARK 500 6 SER A 6 45.20 -88.21 REMARK 500 6 PRO A 32 3.62 -69.79 REMARK 500 6 LYS A 108 40.44 35.45 REMARK 500 6 SER A 118 92.45 -45.07 REMARK 500 6 PRO A 123 -176.79 -69.78 REMARK 500 7 SER A 3 113.93 -171.92 REMARK 500 7 GLU A 19 -35.85 -39.47 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002022397.1 RELATED DB: TARGETDB DBREF 1X5E A 8 120 UNP Q9H3N1 TXND1_HUMAN 30 142 SEQADV 1X5E GLY A 1 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E SER A 2 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E SER A 3 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E GLY A 4 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E SER A 5 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E SER A 6 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E GLY A 7 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E SER A 121 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E GLY A 122 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E PRO A 123 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E SER A 124 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E SER A 125 UNP Q9H3N1 CLONING ARTIFACT SEQADV 1X5E GLY A 126 UNP Q9H3N1 CLONING ARTIFACT SEQRES 1 A 126 GLY SER SER GLY SER SER GLY ASN VAL ARG VAL ILE THR SEQRES 2 A 126 ASP GLU ASN TRP ARG GLU LEU LEU GLU GLY ASP TRP MET SEQRES 3 A 126 ILE GLU PHE TYR ALA PRO TRP CYS PRO ALA CYS GLN ASN SEQRES 4 A 126 LEU GLN PRO GLU TRP GLU SER PHE ALA GLU TRP GLY GLU SEQRES 5 A 126 ASP LEU GLU VAL ASN ILE ALA LYS VAL ASP VAL THR GLU SEQRES 6 A 126 GLN PRO GLY LEU SER GLY ARG PHE ILE ILE ASN ALA LEU SEQRES 7 A 126 PRO THR ILE TYR HIS CYS LYS ASP GLY GLU PHE ARG ARG SEQRES 8 A 126 TYR GLN GLY PRO ARG THR LYS LYS ASP PHE ILE ASN PHE SEQRES 9 A 126 ILE SER ASP LYS GLU TRP LYS SER ILE GLU PRO VAL SER SEQRES 10 A 126 SER TRP PHE SER GLY PRO SER SER GLY HELIX 1 1 ASN A 16 LEU A 21 1 6 HELIX 2 2 CYS A 34 GLU A 52 1 19 HELIX 3 3 ASP A 53 GLU A 55 5 3 HELIX 4 4 GLN A 66 PHE A 73 1 8 HELIX 5 5 THR A 97 ASP A 107 1 11 HELIX 6 6 LYS A 108 ILE A 113 5 6 SHEET 1 A 6 VAL A 9 VAL A 11 0 SHEET 2 A 6 ASN A 57 ASP A 62 1 O ILE A 58 N ARG A 10 SHEET 3 A 6 ASP A 24 TYR A 30 1 N MET A 26 O ALA A 59 SHEET 4 A 6 THR A 80 LYS A 85 -1 O THR A 80 N PHE A 29 SHEET 5 A 6 GLU A 88 ARG A 91 -1 O GLU A 88 N LYS A 85 SHEET 6 A 6 PRO A 115 VAL A 116 -1 O VAL A 116 N PHE A 89 CISPEP 1 LEU A 78 PRO A 79 1 -0.20 CISPEP 2 LEU A 78 PRO A 79 2 -0.11 CISPEP 3 LEU A 78 PRO A 79 3 -0.16 CISPEP 4 LEU A 78 PRO A 79 4 -0.15 CISPEP 5 LEU A 78 PRO A 79 5 -0.14 CISPEP 6 LEU A 78 PRO A 79 6 -0.12 CISPEP 7 LEU A 78 PRO A 79 7 -0.13 CISPEP 8 LEU A 78 PRO A 79 8 -0.17 CISPEP 9 LEU A 78 PRO A 79 9 -0.14 CISPEP 10 LEU A 78 PRO A 79 10 -0.12 CISPEP 11 LEU A 78 PRO A 79 11 -0.14 CISPEP 12 LEU A 78 PRO A 79 12 -0.11 CISPEP 13 LEU A 78 PRO A 79 13 -0.10 CISPEP 14 LEU A 78 PRO A 79 14 -0.08 CISPEP 15 LEU A 78 PRO A 79 15 -0.12 CISPEP 16 LEU A 78 PRO A 79 16 -0.16 CISPEP 17 LEU A 78 PRO A 79 17 -0.15 CISPEP 18 LEU A 78 PRO A 79 18 -0.19 CISPEP 19 LEU A 78 PRO A 79 19 -0.03 CISPEP 20 LEU A 78 PRO A 79 20 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20