HEADER TRANSFERASE 02-DEC-04 1VQ1 TITLE CRYSTAL STRUCTURE OF N5-GLUTAMINE METHYLTRANSFERASE, HEMK(EC 2.1.1.-) TITLE 2 (TM0488) FROM THERMOTOGA MARITIMA AT 2.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: N5-GLUTAMINE METHYLTRANSFERASE, HEMK; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0488; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0488, N5-GLUTAMINE METHYLTRANSFERASE, HEMK(EC 2.1.1.-), STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 20-SEP-23 1VQ1 1 REMARK REVDAT 5 25-JAN-23 1VQ1 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1VQ1 1 VERSN REVDAT 3 24-FEB-09 1VQ1 1 VERSN REVDAT 2 24-OCT-06 1VQ1 1 REMARK REVDAT 1 01-FEB-05 1VQ1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF N5-GLUTAMINE METHYLTRANSFERASE, HEMK(EC JRNL TITL 2 2.1.1.-) (TM0488) FROM THERMOTOGA MARITIMA AT 2.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 15024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 801 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 74.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.50000 REMARK 3 B22 (A**2) : -7.50000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.416 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.375 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4246 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4005 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5728 ; 1.507 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9256 ; 0.780 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 7.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;30.817 ;23.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 744 ;17.375 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 654 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4658 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 891 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 988 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4203 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2117 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2605 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.352 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2689 ; 0.995 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1094 ; 0.383 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4219 ; 1.394 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 3.285 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1509 ; 4.495 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 12 A 85 2 REMARK 3 1 B 12 B 85 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 435 ; 0.03 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 688 ; 0.31 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 435 ; 0.11 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 688 ; 0.58 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 86 A 282 2 REMARK 3 1 B 86 B 282 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 1117 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 A (A): 1749 ; 0.36 ; 0.50 REMARK 3 TIGHT THERMAL 2 A (A**2): 1117 ; 0.14 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 1749 ; 0.76 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9881 11.9553 9.8928 REMARK 3 T TENSOR REMARK 3 T11: -0.0491 T22: -0.0124 REMARK 3 T33: -0.2841 T12: 0.0373 REMARK 3 T13: -0.2921 T23: 0.1524 REMARK 3 L TENSOR REMARK 3 L11: 6.0832 L22: 11.4257 REMARK 3 L33: 9.7491 L12: 0.1555 REMARK 3 L13: -2.3971 L23: 1.8002 REMARK 3 S TENSOR REMARK 3 S11: 0.5264 S12: 0.4500 S13: 0.3394 REMARK 3 S21: -0.6257 S22: -0.1156 S23: -0.2067 REMARK 3 S31: 0.0728 S32: -0.1706 S33: -0.4109 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1764 -3.2390 38.6992 REMARK 3 T TENSOR REMARK 3 T11: -0.4297 T22: -0.3434 REMARK 3 T33: -0.3085 T12: -0.0136 REMARK 3 T13: -0.0507 T23: 0.0767 REMARK 3 L TENSOR REMARK 3 L11: 3.9033 L22: 5.8365 REMARK 3 L33: 8.0099 L12: 0.1722 REMARK 3 L13: 1.4396 L23: -1.3302 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: -0.2047 S13: -0.0598 REMARK 3 S21: 0.1087 S22: 0.2699 S23: 0.7238 REMARK 3 S31: 0.1546 S32: -1.1116 S33: -0.4193 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4521 -28.0856 15.6415 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: -0.0752 REMARK 3 T33: 0.2046 T12: -0.0728 REMARK 3 T13: 0.2074 T23: 0.1388 REMARK 3 L TENSOR REMARK 3 L11: 12.3897 L22: 28.3096 REMARK 3 L33: 29.8229 L12: -4.5670 REMARK 3 L13: 2.9977 L23: 2.6181 REMARK 3 S TENSOR REMARK 3 S11: 0.8050 S12: -0.5403 S13: 1.2476 REMARK 3 S21: 1.3170 S22: -1.2841 S23: 0.1522 REMARK 3 S31: -2.4636 S32: -1.7830 S33: 0.4791 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 282 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1040 -13.4976 -5.3668 REMARK 3 T TENSOR REMARK 3 T11: -0.3091 T22: -0.3599 REMARK 3 T33: -0.0858 T12: -0.0006 REMARK 3 T13: 0.0578 T23: 0.0997 REMARK 3 L TENSOR REMARK 3 L11: 5.7876 L22: 8.9155 REMARK 3 L33: 5.2313 L12: 0.3821 REMARK 3 L13: -0.8862 L23: -1.3277 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: 0.7347 S13: 0.2623 REMARK 3 S21: -0.0645 S22: 0.5323 S23: 1.2155 REMARK 3 S31: 0.0553 S32: -0.5838 S33: -0.3690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DUE TO LACK OF DENSITY, THE FOLLOWING REGIONS WERE REMARK 3 NOT MODELED: A/B1-11, A207-211, B205-211. SAM MODELED BASED ON REMARK 3 RELATED STRUCTURE (1NV8) REMARK 4 REMARK 4 1VQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000002049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46300 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1NV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0% MPD, 10.0% PEG-6000, 0.1M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.48650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.30550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.48650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.30550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 207 REMARK 465 PRO A 208 REMARK 465 LYS A 209 REMARK 465 ASP A 210 REMARK 465 VAL A 211 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 LYS B 5 REMARK 465 ASN B 6 REMARK 465 VAL B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 ALA B 205 REMARK 465 HIS B 206 REMARK 465 LEU B 207 REMARK 465 PRO B 208 REMARK 465 LYS B 209 REMARK 465 ASP B 210 REMARK 465 VAL B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 155 CD CE NZ REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ASP B 55 CG OD1 OD2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LYS B 155 CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 PHE B 213 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 249 CD OE1 OE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 151 O2' SAM A 301 2.05 REMARK 500 OE2 GLU B 108 OG SER B 268 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 107.09 -45.31 REMARK 500 LYS A 48 -39.02 -37.02 REMARK 500 LEU A 51 -7.41 -52.23 REMARK 500 ASP A 55 -80.42 -169.44 REMARK 500 TYR A 77 121.96 -24.72 REMARK 500 GLU A 97 138.75 -39.12 REMARK 500 PHE A 180 -122.55 48.86 REMARK 500 ALA A 205 48.65 -100.11 REMARK 500 LEU A 219 -60.50 -94.90 REMARK 500 GLU A 223 -9.59 -55.48 REMARK 500 ASP A 261 -1.87 80.50 REMARK 500 ASP A 267 -168.93 -103.09 REMARK 500 LYS B 13 108.79 -45.42 REMARK 500 LYS B 48 -37.74 -35.83 REMARK 500 LEU B 51 -6.82 -53.51 REMARK 500 ASP B 55 -76.60 -171.87 REMARK 500 TYR B 77 120.12 -24.60 REMARK 500 GLU B 97 137.15 -35.90 REMARK 500 PHE B 180 -124.64 49.74 REMARK 500 ASP B 267 -169.20 -103.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 52 LEU A 53 139.40 REMARK 500 SER A 281 SER A 282 146.38 REMARK 500 PHE B 52 LEU B 53 139.70 REMARK 500 SER B 281 SER B 282 149.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282361 RELATED DB: TARGETDB DBREF 1VQ1 A 1 282 UNP Q9WYV8 Q9WYV8_THEMA 1 282 DBREF 1VQ1 B 1 282 UNP Q9WYV8 Q9WYV8_THEMA 1 282 SEQADV 1VQ1 MSE A -11 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 GLY A -10 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 SER A -9 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 ASP A -8 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 LYS A -7 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 ILE A -6 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS A -5 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS A -4 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS A -3 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS A -2 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS A -1 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS A 0 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 MSE A 1 UNP Q9WYV8 MET 1 MODIFIED RESIDUE SEQADV 1VQ1 MSE A 89 UNP Q9WYV8 MET 89 MODIFIED RESIDUE SEQADV 1VQ1 MSE A 193 UNP Q9WYV8 MET 193 MODIFIED RESIDUE SEQADV 1VQ1 MSE A 245 UNP Q9WYV8 MET 245 MODIFIED RESIDUE SEQADV 1VQ1 MSE B -11 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 GLY B -10 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 SER B -9 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 ASP B -8 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 LYS B -7 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 ILE B -6 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS B -5 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS B -4 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS B -3 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS B -2 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS B -1 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 HIS B 0 UNP Q9WYV8 EXPRESSION TAG SEQADV 1VQ1 MSE B 1 UNP Q9WYV8 MET 1 MODIFIED RESIDUE SEQADV 1VQ1 MSE B 89 UNP Q9WYV8 MET 89 MODIFIED RESIDUE SEQADV 1VQ1 MSE B 193 UNP Q9WYV8 MET 193 MODIFIED RESIDUE SEQADV 1VQ1 MSE B 245 UNP Q9WYV8 MET 245 MODIFIED RESIDUE SEQRES 1 A 294 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 294 ASP THR ARG LYS ASN VAL SER GLY ALA GLU ARG LYS ILE SEQRES 3 A 294 TRP SER LEU ILE ARG ASP CYS SER GLY LYS LEU GLU GLY SEQRES 4 A 294 VAL THR GLU THR SER VAL LEU GLU VAL LEU LEU ILE VAL SEQRES 5 A 294 SER ARG VAL LEU GLY ILE ARG LYS GLU ASP LEU PHE LEU SEQRES 6 A 294 LYS ASP LEU GLY VAL SER PRO THR GLU GLU LYS ARG ILE SEQRES 7 A 294 LEU GLU LEU VAL GLU LYS ARG ALA SER GLY TYR PRO LEU SEQRES 8 A 294 HIS TYR ILE LEU GLY GLU LYS GLU PHE MSE GLY LEU SER SEQRES 9 A 294 PHE LEU VAL GLU GLU GLY VAL PHE VAL PRO ARG PRO GLU SEQRES 10 A 294 THR GLU GLU LEU VAL GLU LEU ALA LEU GLU LEU ILE ARG SEQRES 11 A 294 LYS TYR GLY ILE LYS THR VAL ALA ASP ILE GLY THR GLY SEQRES 12 A 294 SER GLY ALA ILE GLY VAL SER VAL ALA LYS PHE SER ASP SEQRES 13 A 294 ALA ILE VAL PHE ALA THR ASP VAL SER SER LYS ALA VAL SEQRES 14 A 294 GLU ILE ALA ARG LYS ASN ALA GLU ARG HIS GLY VAL SER SEQRES 15 A 294 ASP ARG PHE PHE VAL ARG LYS GLY GLU PHE LEU GLU PRO SEQRES 16 A 294 PHE LYS GLU LYS PHE ALA SER ILE GLU MSE ILE LEU SER SEQRES 17 A 294 ASN PRO PRO TYR VAL LYS SER SER ALA HIS LEU PRO LYS SEQRES 18 A 294 ASP VAL LEU PHE GLU PRO PRO GLU ALA LEU PHE GLY GLY SEQRES 19 A 294 GLU ASP GLY LEU ASP PHE TYR ARG GLU PHE PHE GLY ARG SEQRES 20 A 294 TYR ASP THR SER GLY LYS ILE VAL LEU MSE GLU ILE GLY SEQRES 21 A 294 GLU ASP GLN VAL GLU GLU LEU LYS LYS ILE VAL SER ASP SEQRES 22 A 294 THR VAL PHE LEU LYS ASP SER ALA GLY LYS TYR ARG PHE SEQRES 23 A 294 LEU LEU LEU ASN ARG ARG SER SER SEQRES 1 B 294 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 294 ASP THR ARG LYS ASN VAL SER GLY ALA GLU ARG LYS ILE SEQRES 3 B 294 TRP SER LEU ILE ARG ASP CYS SER GLY LYS LEU GLU GLY SEQRES 4 B 294 VAL THR GLU THR SER VAL LEU GLU VAL LEU LEU ILE VAL SEQRES 5 B 294 SER ARG VAL LEU GLY ILE ARG LYS GLU ASP LEU PHE LEU SEQRES 6 B 294 LYS ASP LEU GLY VAL SER PRO THR GLU GLU LYS ARG ILE SEQRES 7 B 294 LEU GLU LEU VAL GLU LYS ARG ALA SER GLY TYR PRO LEU SEQRES 8 B 294 HIS TYR ILE LEU GLY GLU LYS GLU PHE MSE GLY LEU SER SEQRES 9 B 294 PHE LEU VAL GLU GLU GLY VAL PHE VAL PRO ARG PRO GLU SEQRES 10 B 294 THR GLU GLU LEU VAL GLU LEU ALA LEU GLU LEU ILE ARG SEQRES 11 B 294 LYS TYR GLY ILE LYS THR VAL ALA ASP ILE GLY THR GLY SEQRES 12 B 294 SER GLY ALA ILE GLY VAL SER VAL ALA LYS PHE SER ASP SEQRES 13 B 294 ALA ILE VAL PHE ALA THR ASP VAL SER SER LYS ALA VAL SEQRES 14 B 294 GLU ILE ALA ARG LYS ASN ALA GLU ARG HIS GLY VAL SER SEQRES 15 B 294 ASP ARG PHE PHE VAL ARG LYS GLY GLU PHE LEU GLU PRO SEQRES 16 B 294 PHE LYS GLU LYS PHE ALA SER ILE GLU MSE ILE LEU SER SEQRES 17 B 294 ASN PRO PRO TYR VAL LYS SER SER ALA HIS LEU PRO LYS SEQRES 18 B 294 ASP VAL LEU PHE GLU PRO PRO GLU ALA LEU PHE GLY GLY SEQRES 19 B 294 GLU ASP GLY LEU ASP PHE TYR ARG GLU PHE PHE GLY ARG SEQRES 20 B 294 TYR ASP THR SER GLY LYS ILE VAL LEU MSE GLU ILE GLY SEQRES 21 B 294 GLU ASP GLN VAL GLU GLU LEU LYS LYS ILE VAL SER ASP SEQRES 22 B 294 THR VAL PHE LEU LYS ASP SER ALA GLY LYS TYR ARG PHE SEQRES 23 B 294 LEU LEU LEU ASN ARG ARG SER SER MODRES 1VQ1 MSE A 89 MET SELENOMETHIONINE MODRES 1VQ1 MSE A 193 MET SELENOMETHIONINE MODRES 1VQ1 MSE A 245 MET SELENOMETHIONINE MODRES 1VQ1 MSE B 89 MET SELENOMETHIONINE MODRES 1VQ1 MSE B 193 MET SELENOMETHIONINE MODRES 1VQ1 MSE B 245 MET SELENOMETHIONINE HET MSE A 89 8 HET MSE A 193 8 HET MSE A 245 8 HET MSE B 89 8 HET MSE B 193 8 HET MSE B 245 8 HET SAM A 301 27 HET SAM B 301 27 HETNAM MSE SELENOMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *7(H2 O) HELIX 1 1 LYS A 13 LEU A 25 1 13 HELIX 2 2 THR A 31 GLY A 45 1 15 HELIX 3 3 ARG A 47 LEU A 51 5 5 HELIX 4 4 SER A 59 GLY A 76 1 18 HELIX 5 5 PRO A 78 GLY A 84 1 7 HELIX 6 6 PRO A 104 GLY A 121 1 18 HELIX 7 7 ILE A 135 PHE A 142 1 8 HELIX 8 8 SER A 153 ARG A 166 1 14 HELIX 9 9 LEU A 181 PHE A 188 5 8 HELIX 10 10 PRO A 215 PHE A 220 1 6 HELIX 11 11 LEU A 226 TYR A 236 1 11 HELIX 12 12 GLY A 248 ASP A 250 5 3 HELIX 13 13 GLN A 251 VAL A 259 1 9 HELIX 14 14 LYS B 13 LEU B 25 1 13 HELIX 15 15 THR B 31 GLY B 45 1 15 HELIX 16 16 ARG B 47 LEU B 51 5 5 HELIX 17 17 SER B 59 GLY B 76 1 18 HELIX 18 18 PRO B 78 GLY B 84 1 7 HELIX 19 19 PRO B 104 GLY B 121 1 18 HELIX 20 20 GLY B 133 PHE B 142 1 10 HELIX 21 21 SER B 153 ARG B 166 1 14 HELIX 22 22 LEU B 181 PHE B 188 5 8 HELIX 23 23 PRO B 215 PHE B 220 1 6 HELIX 24 24 LEU B 226 TYR B 236 1 11 HELIX 25 25 GLY B 248 ASP B 250 5 3 HELIX 26 26 GLN B 251 VAL B 259 1 9 SHEET 1 A 2 LYS A 86 PHE A 88 0 SHEET 2 A 2 LEU A 91 PHE A 93 -1 O PHE A 93 N LYS A 86 SHEET 1 B 7 PHE A 173 LYS A 177 0 SHEET 2 B 7 ILE A 146 ASP A 151 1 N ALA A 149 O PHE A 174 SHEET 3 B 7 THR A 124 ILE A 128 1 N VAL A 125 O ILE A 146 SHEET 4 B 7 MSE A 193 SER A 196 1 O MSE A 193 N ALA A 126 SHEET 5 B 7 ILE A 242 GLU A 246 1 O ILE A 242 N ILE A 194 SHEET 6 B 7 TYR A 272 ASN A 278 -1 O LEU A 277 N VAL A 243 SHEET 7 B 7 VAL A 263 LYS A 266 -1 N VAL A 263 O LEU A 276 SHEET 1 C 2 LYS B 86 PHE B 88 0 SHEET 2 C 2 LEU B 91 PHE B 93 -1 O PHE B 93 N LYS B 86 SHEET 1 D 7 PHE B 173 LYS B 177 0 SHEET 2 D 7 ILE B 146 ASP B 151 1 N VAL B 147 O PHE B 174 SHEET 3 D 7 THR B 124 ILE B 128 1 N ASP B 127 O PHE B 148 SHEET 4 D 7 MSE B 193 SER B 196 1 O MSE B 193 N ALA B 126 SHEET 5 D 7 ILE B 242 GLU B 246 1 O ILE B 242 N ILE B 194 SHEET 6 D 7 TYR B 272 ASN B 278 -1 O LEU B 277 N VAL B 243 SHEET 7 D 7 VAL B 263 LYS B 266 -1 N VAL B 263 O LEU B 276 LINK C PHE A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N GLY A 90 1555 1555 1.32 LINK C GLU A 192 N MSE A 193 1555 1555 1.33 LINK C MSE A 193 N ILE A 194 1555 1555 1.33 LINK C LEU A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N GLU A 246 1555 1555 1.33 LINK C PHE B 88 N MSE B 89 1555 1555 1.34 LINK C MSE B 89 N GLY B 90 1555 1555 1.33 LINK C GLU B 192 N MSE B 193 1555 1555 1.31 LINK C MSE B 193 N ILE B 194 1555 1555 1.32 LINK C LEU B 244 N MSE B 245 1555 1555 1.31 LINK C MSE B 245 N GLU B 246 1555 1555 1.32 SITE 1 AC1 16 PHE A 100 THR A 106 GLY A 129 THR A 130 SITE 2 AC1 16 GLY A 131 ASP A 151 VAL A 152 GLY A 178 SITE 3 AC1 16 GLU A 179 PHE A 180 ASN A 197 PRO A 198 SITE 4 AC1 16 PRO A 199 ALA A 218 PHE A 228 HOH A 303 SITE 1 AC2 15 PHE B 100 GLY B 129 THR B 130 GLY B 131 SITE 2 AC2 15 ILE B 135 ASP B 151 VAL B 152 GLU B 179 SITE 3 AC2 15 PHE B 180 ASN B 197 PRO B 198 PRO B 199 SITE 4 AC2 15 GLU B 217 ALA B 218 PHE B 228 CRYST1 140.973 58.611 85.667 90.00 109.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007094 0.000000 0.002506 0.00000 SCALE2 0.000000 0.017062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012380 0.00000