HEADER HYDROLASE 30-SEP-03 1UMG TITLE CRYSTAL STRUCTURE OF FRUCTOSE-1,6-BISPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 385AA LONG CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 3-364; COMPND 5 SYNONYM: FRUCTOSE-1,6-BISPHOSPHATASE; COMPND 6 EC: 3.1.3.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII STR. 7; SOURCE 3 ORGANISM_TAXID: 273063; SOURCE 4 STRAIN: STRAIN 7; SOURCE 5 GENE: ST0318; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS FRUCTOSE-1,6-BISPHOSPHATASE, HYPERTHERMOPHILIC ARCHAEA, ALPHA-BETA- KEYWDS 2 BETA-ALPHA FOUR LAYER SANDWICH, MAGNESIUM ION, PHOSPHATASE, OCTAMER, KEYWDS 3 THREE METAL-ASSISTED MECHANISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.NISHIMASU,S.FUSHINOBU,H.SHOUN,T.WAKAGI REVDAT 4 21-DEC-16 1UMG 1 TITLE REVDAT 3 13-JUL-11 1UMG 1 VERSN REVDAT 2 24-FEB-09 1UMG 1 VERSN REVDAT 1 13-JUL-04 1UMG 0 JRNL AUTH H.NISHIMASU,S.FUSHINOBU,H.SHOUN,T.WAKAGI JRNL TITL THE FIRST CRYSTAL STRUCTURE OF THE NOVEL CLASS OF JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATASE PRESENT IN THERMOPHILIC ARCHAEA. JRNL REF STRUCTURE V. 12 949 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15274916 JRNL DOI 10.1016/J.STR.2004.03.026 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3466048.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 44654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2212 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6991 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 357 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.70000 REMARK 3 B22 (A**2) : 1.70000 REMARK 3 B33 (A**2) : -3.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.500 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.540 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.540 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.630 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 64.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : FBPMPD.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CIS_PEPTIDE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : FBPMPD.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB005989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL40B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9712, 0.9792, 0.9794 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44654 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.220 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.14100 REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM CHLORIDE, SODIUM REMARK 280 CHLORIDE, TRIS-HCL, FRUCTOSE-1,6-BISPHOSPHATE, PH 8.2, REMARK 280 MICROBATCH, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.88900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.58700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 55.88900 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 76.58700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.88900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 76.58700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 55.88900 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 76.58700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.88900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 76.58700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 55.88900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 76.58700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 55.88900 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 76.58700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.88900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.88900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.58700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A OCTAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: 1-X, 1-Y, Z AND REMARK 300 Y, 1-X, Z AND 1-Y, X, Z AND X, 1-Y, -Z AND 1-Y, 1-X, -Z AND 1-X, Y, REMARK 300 -Z, AND Y, X, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 64610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -714.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.77800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.77800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 111.77800 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 111.77800 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 111.77800 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 111.77800 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 111.77800 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 111.77800 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 226 REMARK 465 GLY A 227 REMARK 465 LYS A 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 220 O HOH A 667 1.56 REMARK 500 N TYR A 229 O HOH A 605 1.82 REMARK 500 OE1 GLU A 135 O HOH A 666 1.90 REMARK 500 O HOH A 518 O HOH A 666 2.13 REMARK 500 O HOH A 512 O HOH A 646 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 579 O HOH A 579 16555 0.49 REMARK 500 O HOH A 501 O HOH A 501 7555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 184 CA PRO A 184 C -0.286 REMARK 500 ALA A 183 C PRO A 184 N -0.275 REMARK 500 GLN A 185 N GLN A 185 CA 0.177 REMARK 500 PRO A 184 C GLN A 185 N 0.229 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 184 N - CA - C ANGL. DEV. = 23.5 DEGREES REMARK 500 PRO A 184 CA - C - O ANGL. DEV. = 23.7 DEGREES REMARK 500 GLN A 185 N - CA - CB ANGL. DEV. = -20.8 DEGREES REMARK 500 PRO A 184 O - C - N ANGL. DEV. = -27.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 18.20 59.40 REMARK 500 HIS A 19 46.34 -89.05 REMARK 500 LYS A 133 37.73 73.32 REMARK 500 LEU A 193 -61.07 -92.09 REMARK 500 ASP A 234 71.51 48.56 REMARK 500 GLN A 242 172.04 64.08 REMARK 500 TRP A 264 -144.23 55.93 REMARK 500 THR A 284 -93.59 -126.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 184 10.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PRO A 184 21.4 L L OUTSIDE RANGE REMARK 500 GLN A 185 45.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2FP A 400 O13 REMARK 620 2 ASP A 12 OD2 91.5 REMARK 620 3 GLN A 95 OE1 86.0 88.2 REMARK 620 4 HOH A 407 O 171.0 84.4 85.9 REMARK 620 5 ASP A 53 OD2 89.6 83.2 170.2 97.8 REMARK 620 6 HIS A 19 ND1 93.4 174.4 89.5 90.4 99.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2FP A 400 O11 REMARK 620 2 HOH A 410 O 87.5 REMARK 620 3 HOH A 409 O 136.5 91.2 REMARK 620 4 2FP A 400 O1 60.2 80.8 76.7 REMARK 620 5 HOH A 408 O 88.2 171.3 86.8 90.5 REMARK 620 6 ASP A 233 OD2 110.1 94.3 113.3 169.1 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 234 OD2 REMARK 620 2 2FP A 400 O11 87.2 REMARK 620 3 HOH A 406 O 68.5 78.6 REMARK 620 4 HOH A 411 O 175.5 95.1 115.7 REMARK 620 5 HOH A 412 O 99.1 154.3 80.7 80.4 REMARK 620 6 ASP A 233 OD1 87.8 99.9 156.3 88.0 105.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 53 OD1 REMARK 620 2 ASP A 54 OD2 91.4 REMARK 620 3 ASP A 132 OD1 93.7 81.7 REMARK 620 4 2FP A 400 O12 91.8 176.6 96.8 REMARK 620 5 HOH A 406 O 91.5 91.6 171.6 89.6 REMARK 620 6 ASP A 234 OD2 171.1 83.0 92.3 94.0 81.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2FP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 405 DBREF 1UMG A 3 364 UNP Q975V5 Q975V5_SULTO 3 364 SEQRES 1 A 362 LYS THR THR ILE SER VAL ILE LYS ALA ASP ILE GLY SER SEQRES 2 A 362 LEU ALA GLY HIS HIS ILE VAL HIS PRO ASP THR MET ALA SEQRES 3 A 362 ALA ALA ASN LYS VAL LEU ALA SER ALA LYS GLU GLN GLY SEQRES 4 A 362 ILE ILE LEU ASP TYR TYR ILE THR HIS VAL GLY ASP ASP SEQRES 5 A 362 LEU GLN LEU ILE MET THR HIS THR ARG GLY GLU LEU ASP SEQRES 6 A 362 THR LYS VAL HIS GLU THR ALA TRP ASN ALA PHE LYS GLU SEQRES 7 A 362 ALA ALA LYS VAL ALA LYS ASP LEU GLY LEU TYR ALA ALA SEQRES 8 A 362 GLY GLN ASP LEU LEU SER ASP SER PHE SER GLY ASN VAL SEQRES 9 A 362 ARG GLY LEU GLY PRO GLY VAL ALA GLU MET GLU ILE GLU SEQRES 10 A 362 GLU ARG ALA SER GLU PRO ILE ALA ILE PHE MET ALA ASP SEQRES 11 A 362 LYS THR GLU PRO GLY ALA TYR ASN LEU PRO LEU TYR LYS SEQRES 12 A 362 MET PHE ALA ASP PRO PHE ASN THR PRO GLY LEU VAL ILE SEQRES 13 A 362 ASP PRO THR MET HIS GLY GLY PHE LYS PHE GLU VAL LEU SEQRES 14 A 362 ASP VAL TYR GLN GLY GLU ALA VAL MET LEU SER ALA PRO SEQRES 15 A 362 GLN GLU ILE TYR ASP LEU LEU ALA LEU ILE GLY THR PRO SEQRES 16 A 362 ALA ARG TYR VAL ILE ARG ARG VAL TYR ARG ASN GLU ASP SEQRES 17 A 362 ASN LEU LEU ALA ALA VAL VAL SER ILE GLU ARG LEU ASN SEQRES 18 A 362 LEU ILE ALA GLY LYS TYR VAL GLY LYS ASP ASP PRO VAL SEQRES 19 A 362 MET ILE VAL ARG LEU GLN HIS GLY LEU PRO ALA LEU GLY SEQRES 20 A 362 GLU ALA LEU GLU ALA PHE ALA PHE PRO HIS LEU VAL PRO SEQRES 21 A 362 GLY TRP MET ARG GLY SER HIS TYR GLY PRO LEU MET PRO SEQRES 22 A 362 VAL SER GLN ARG ASP ALA LYS ALA THR ARG PHE ASP GLY SEQRES 23 A 362 PRO PRO ARG LEU LEU GLY LEU GLY PHE ASN VAL LYS ASN SEQRES 24 A 362 GLY ARG LEU VAL GLY PRO THR ASP LEU PHE ASP ASP PRO SEQRES 25 A 362 ALA PHE ASP GLU THR ARG ARG LEU ALA ASN ILE VAL ALA SEQRES 26 A 362 ASP TYR MET ARG ARG HIS GLY PRO PHE MET PRO HIS ARG SEQRES 27 A 362 LEU GLU PRO THR GLU MET GLU TYR THR THR LEU PRO LEU SEQRES 28 A 362 ILE LEU GLU LYS LEU LYS ASP ARG PHE LYS LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HET 2FP A 400 20 HET MPD A 405 8 HETNAM MG MAGNESIUM ION HETNAM 2FP 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM) HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 MG 4(MG 2+) FORMUL 6 2FP C6 H14 O12 P2 FORMUL 7 MPD C6 H14 O2 FORMUL 8 HOH *262(H2 O) HELIX 1 1 HIS A 23 GLN A 40 1 18 HELIX 2 2 ASP A 67 LEU A 88 1 22 HELIX 3 3 GLU A 135 ALA A 138 5 4 HELIX 4 4 TYR A 139 ASP A 149 1 11 HELIX 5 5 PRO A 154 ASP A 159 1 6 HELIX 6 6 PRO A 160 HIS A 163 5 4 HELIX 7 7 GLU A 186 GLY A 195 1 10 HELIX 8 8 ALA A 247 ALA A 254 1 8 HELIX 9 9 TRP A 264 SER A 268 5 5 HELIX 10 10 THR A 284 GLY A 288 5 5 HELIX 11 11 ASP A 313 ALA A 315 5 3 HELIX 12 12 PHE A 316 ARG A 332 1 17 HELIX 13 13 GLU A 342 MET A 346 5 5 HELIX 14 14 THR A 350 LEU A 358 1 9 SHEET 1 A 4 ASP A 45 VAL A 51 0 SHEET 2 A 4 ASP A 54 HIS A 61 -1 O GLN A 56 N THR A 49 SHEET 3 A 4 THR A 4 ALA A 11 -1 N SER A 7 O MET A 59 SHEET 4 A 4 GLY A 112 ILE A 118 -1 O ILE A 118 N THR A 4 SHEET 1 B 8 GLU A 177 SER A 182 0 SHEET 2 B 8 PHE A 166 ASP A 172 -1 N ASP A 172 O GLU A 177 SHEET 3 B 8 TYR A 200 ARG A 207 -1 O VAL A 201 N LEU A 171 SHEET 4 B 8 LEU A 213 VAL A 217 -1 O ALA A 214 N VAL A 205 SHEET 5 B 8 VAL A 236 ARG A 240 -1 O ILE A 238 N VAL A 216 SHEET 6 B 8 PRO A 125 ASP A 132 -1 N PHE A 129 O MET A 237 SHEET 7 B 8 ARG A 291 LYS A 300 -1 O LEU A 293 N MET A 130 SHEET 8 B 8 MET A 274 VAL A 276 1 N VAL A 276 O LEU A 292 SHEET 1 C 8 GLU A 177 SER A 182 0 SHEET 2 C 8 PHE A 166 ASP A 172 -1 N ASP A 172 O GLU A 177 SHEET 3 C 8 TYR A 200 ARG A 207 -1 O VAL A 201 N LEU A 171 SHEET 4 C 8 LEU A 213 VAL A 217 -1 O ALA A 214 N VAL A 205 SHEET 5 C 8 VAL A 236 ARG A 240 -1 O ILE A 238 N VAL A 216 SHEET 6 C 8 PRO A 125 ASP A 132 -1 N PHE A 129 O MET A 237 SHEET 7 C 8 ARG A 291 LYS A 300 -1 O LEU A 293 N MET A 130 SHEET 8 C 8 ARG A 303 ASP A 309 -1 O VAL A 305 N ASN A 298 SHEET 1 D 2 LEU A 260 GLY A 263 0 SHEET 2 D 2 HIS A 269 PRO A 272 -1 O HIS A 269 N GLY A 263 LINK O13 2FP A 400 MG MG A 404 1555 1555 2.01 LINK MG MG A 401 O11 2FP A 400 1555 1555 2.16 LINK MG MG A 401 O HOH A 410 1555 1555 2.16 LINK MG MG A 401 O HOH A 409 1555 1555 2.06 LINK MG MG A 401 O1 2FP A 400 1555 1555 2.72 LINK MG MG A 401 O HOH A 408 1555 1555 2.16 LINK MG MG A 401 OD2 ASP A 233 1555 1555 1.90 LINK MG MG A 402 OD2 ASP A 234 1555 1555 2.38 LINK MG MG A 402 O11 2FP A 400 1555 1555 2.28 LINK MG MG A 402 O HOH A 406 1555 1555 2.44 LINK MG MG A 402 O HOH A 411 1555 1555 2.37 LINK MG MG A 402 O HOH A 412 1555 1555 2.35 LINK MG MG A 402 OD1 ASP A 233 1555 1555 2.26 LINK MG MG A 403 OD1 ASP A 53 1555 1555 2.10 LINK MG MG A 403 OD2 ASP A 54 1555 1555 2.15 LINK MG MG A 403 OD1 ASP A 132 1555 1555 2.09 LINK MG MG A 403 O12 2FP A 400 1555 1555 2.16 LINK MG MG A 403 O HOH A 406 1555 1555 2.11 LINK MG MG A 403 OD2 ASP A 234 1555 1555 2.03 LINK MG MG A 404 OD2 ASP A 12 1555 1555 2.08 LINK MG MG A 404 OE1 GLN A 95 1555 1555 2.29 LINK MG MG A 404 O HOH A 407 1555 1555 2.02 LINK MG MG A 404 OD2 ASP A 53 1555 1555 2.10 LINK MG MG A 404 ND1 HIS A 19 1555 1555 2.20 CISPEP 1 ALA A 183 PRO A 184 0 3.74 CISPEP 2 GLY A 288 PRO A 289 0 -0.14 CISPEP 3 GLY A 306 PRO A 307 0 1.29 CISPEP 4 MET A 337 PRO A 338 0 -0.10 SITE 1 AC1 6 ASP A 233 2FP A 400 MG A 402 HOH A 408 SITE 2 AC1 6 HOH A 409 HOH A 410 SITE 1 AC2 8 ASP A 233 ASP A 234 2FP A 400 MG A 401 SITE 2 AC2 8 MG A 403 HOH A 406 HOH A 411 HOH A 412 SITE 1 AC3 7 ASP A 53 ASP A 54 ASP A 132 ASP A 234 SITE 2 AC3 7 2FP A 400 MG A 402 HOH A 406 SITE 1 AC4 6 ASP A 12 HIS A 19 ASP A 53 GLN A 95 SITE 2 AC4 6 2FP A 400 HOH A 407 SITE 1 AC5 31 ASP A 12 HIS A 19 ASP A 53 TYR A 91 SITE 2 AC5 31 GLN A 95 SER A 103 GLY A 104 ASN A 105 SITE 3 AC5 31 ASP A 132 LYS A 133 ASP A 233 ASP A 234 SITE 4 AC5 31 GLN A 242 HIS A 243 ALA A 247 TRP A 264 SITE 5 AC5 31 MET A 265 ARG A 266 GLY A 267 ASP A 287 SITE 6 AC5 31 TYR A 348 MG A 401 MG A 402 MG A 403 SITE 7 AC5 31 MG A 404 HOH A 406 HOH A 408 HOH A 409 SITE 8 AC5 31 HOH A 410 HOH A 457 HOH A 472 SITE 1 AC6 6 ASP A 317 ARG A 320 ASN A 324 HOH A 421 SITE 2 AC6 6 HOH A 526 HOH A 653 CRYST1 111.778 111.778 153.174 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006529 0.00000