HEADER TRANSFERASE 06-JUN-03 1UFQ TITLE CRYSTAL STRUCTURE OF LIGAND-FREE HUMAN URIDINE-CYTIDINE TITLE 2 KINASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE-CYTIDINE KINASE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 1-250; COMPND 5 SYNONYM: URIDINE-CYTIDINE KINASE; COMPND 6 EC: 2.7.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P KEYWDS ALPHA/BETA MONONUCLEOTIDE-BINDING HOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.N.SUZUKI,K.KOIZUMI,M.FUKUSHIMA,A.MATSUDA,F.INAGAKI REVDAT 3 24-FEB-09 1UFQ 1 VERSN REVDAT 2 18-MAY-04 1UFQ 1 JRNL REMARK REVDAT 1 04-MAY-04 1UFQ 0 JRNL AUTH N.N.SUZUKI,K.KOIZUMI,M.FUKUSHIMA,A.MATSUDA, JRNL AUTH 2 F.INAGAKI JRNL TITL STRUCTURAL BASIS FOR THE SPECIFICITY, CATALYSIS, JRNL TITL 2 AND REGULATION OF HUMAN URIDINE-CYTIDINE KINASE JRNL REF STRUCTURE V. 12 751 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15130468 JRNL DOI 10.1016/J.STR.2004.02.038 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.N.SUZUKI,K.KOIZUMI,M.FUKUSHIMA,A.MATSUDA, REMARK 1 AUTH 2 F.INAGAKI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 HUMAN URIDINE-CYTIDINE KINASE 2 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1477 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12876357 REMARK 1 DOI 10.1107/S0907444903011533 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 302132.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 37658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3769 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5576 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 616 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : -3.45000 REMARK 3 B33 (A**2) : 2.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.280 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.950 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.830 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 39.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UFQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB005777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED REMARK 200 MONOCHROMATOR, VERTICAL REMARK 200 FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38404 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1UDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, PEG3350, GLYCEROL, HEPES, REMARK 280 PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.02850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.13100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.02850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.13100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 188.52400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -84.05700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 94.26200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 HIS A 12 REMARK 465 GLN A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 231 REMARK 465 GLY A 232 REMARK 465 PRO A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 ARG A 236 REMARK 465 GLN A 237 REMARK 465 THR A 238 REMARK 465 ASN A 239 REMARK 465 GLY A 240 REMARK 465 CYS A 241 REMARK 465 LEU A 242 REMARK 465 ASN A 243 REMARK 465 GLY A 244 REMARK 465 TYR A 245 REMARK 465 THR A 246 REMARK 465 PRO A 247 REMARK 465 SER A 248 REMARK 465 ARG A 249 REMARK 465 LYS A 250 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 LEU B 9 REMARK 465 GLN B 10 REMARK 465 ASN B 11 REMARK 465 HIS B 12 REMARK 465 GLN B 13 REMARK 465 GLN B 14 REMARK 465 PRO B 15 REMARK 465 ASN B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 GLU B 48 REMARK 465 VAL B 49 REMARK 465 ASP B 50 REMARK 465 TYR B 51 REMARK 465 GLY B 231 REMARK 465 GLY B 232 REMARK 465 PRO B 233 REMARK 465 SER B 234 REMARK 465 LYS B 235 REMARK 465 ARG B 236 REMARK 465 GLN B 237 REMARK 465 THR B 238 REMARK 465 ASN B 239 REMARK 465 GLY B 240 REMARK 465 CYS B 241 REMARK 465 LEU B 242 REMARK 465 ASN B 243 REMARK 465 GLY B 244 REMARK 465 TYR B 245 REMARK 465 THR B 246 REMARK 465 PRO B 247 REMARK 465 SER B 248 REMARK 465 ARG B 249 REMARK 465 LYS B 250 REMARK 465 PRO C -1 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 ASP C 4 REMARK 465 SER C 5 REMARK 465 GLU C 6 REMARK 465 GLN C 7 REMARK 465 THR C 8 REMARK 465 LEU C 9 REMARK 465 GLN C 10 REMARK 465 ASN C 11 REMARK 465 HIS C 12 REMARK 465 GLN C 13 REMARK 465 GLN C 14 REMARK 465 PRO C 15 REMARK 465 ASN C 16 REMARK 465 GLY C 17 REMARK 465 GLY C 18 REMARK 465 GLY C 231 REMARK 465 GLY C 232 REMARK 465 PRO C 233 REMARK 465 SER C 234 REMARK 465 LYS C 235 REMARK 465 ARG C 236 REMARK 465 GLN C 237 REMARK 465 THR C 238 REMARK 465 ASN C 239 REMARK 465 GLY C 240 REMARK 465 CYS C 241 REMARK 465 LEU C 242 REMARK 465 ASN C 243 REMARK 465 GLY C 244 REMARK 465 TYR C 245 REMARK 465 THR C 246 REMARK 465 PRO C 247 REMARK 465 SER C 248 REMARK 465 ARG C 249 REMARK 465 LYS C 250 REMARK 465 PRO D -1 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 ASP D 4 REMARK 465 SER D 5 REMARK 465 GLU D 6 REMARK 465 GLN D 7 REMARK 465 THR D 8 REMARK 465 LEU D 9 REMARK 465 GLN D 10 REMARK 465 ASN D 11 REMARK 465 HIS D 12 REMARK 465 GLN D 13 REMARK 465 GLN D 14 REMARK 465 PRO D 15 REMARK 465 ASN D 16 REMARK 465 GLY D 17 REMARK 465 GLY D 18 REMARK 465 GLU D 173 REMARK 465 ARG D 174 REMARK 465 GLY D 231 REMARK 465 GLY D 232 REMARK 465 PRO D 233 REMARK 465 SER D 234 REMARK 465 LYS D 235 REMARK 465 ARG D 236 REMARK 465 GLN D 237 REMARK 465 THR D 238 REMARK 465 ASN D 239 REMARK 465 GLY D 240 REMARK 465 CYS D 241 REMARK 465 LEU D 242 REMARK 465 ASN D 243 REMARK 465 GLY D 244 REMARK 465 TYR D 245 REMARK 465 THR D 246 REMARK 465 PRO D 247 REMARK 465 SER D 248 REMARK 465 ARG D 249 REMARK 465 LYS D 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 TYR A 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 VAL A 67 CG1 CG2 REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 VAL A 107 CG1 CG2 REMARK 470 PHE A 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 116 OG REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 SER B 35 OG REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 SER B 142 OG REMARK 470 ARG B 169 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 GLU C 19 CG CD OE1 OE2 REMARK 470 SER C 70 OG REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 VAL C 107 CG1 CG2 REMARK 470 SER C 116 OG REMARK 470 GLU C 121 CG CD OE1 OE2 REMARK 470 GLU C 122 CG CD OE1 OE2 REMARK 470 GLU C 173 CG CD OE1 OE2 REMARK 470 ARG C 174 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 176 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 223 CG CD OE1 NE2 REMARK 470 GLU D 19 CG CD OE1 OE2 REMARK 470 GLU D 48 CG CD OE1 OE2 REMARK 470 ASP D 50 CG OD1 OD2 REMARK 470 TYR D 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 52 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 53 CG CD OE1 NE2 REMARK 470 SER D 70 OG REMARK 470 GLU D 71 CG CD OE1 OE2 REMARK 470 LYS D 75 CG CD CE NZ REMARK 470 LEU D 77 CG CD1 CD2 REMARK 470 LYS D 78 CG CD CE NZ REMARK 470 GLU D 103 CG CD OE1 OE2 REMARK 470 VAL D 107 CG1 CG2 REMARK 470 ASP D 113 CG OD1 OD2 REMARK 470 VAL D 115 CG1 CG2 REMARK 470 SER D 116 OG REMARK 470 SER D 118 OG REMARK 470 GLU D 121 CG CD OE1 OE2 REMARK 470 GLU D 122 CG CD OE1 OE2 REMARK 470 TYR D 127 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 169 CG CD NE CZ NH1 NH2 REMARK 470 SER D 172 OG REMARK 470 GLN D 180 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 51 -11.87 -44.88 REMARK 500 GLU A 103 1.56 -59.62 REMARK 500 PHE A 114 7.98 -53.95 REMARK 500 LYS A 120 -166.66 -75.11 REMARK 500 PRO A 128 127.79 -33.73 REMARK 500 LEU A 178 -54.99 -29.72 REMARK 500 ARG A 210 -42.69 67.63 REMARK 500 SER B 26 -168.64 -123.52 REMARK 500 GLN B 46 17.54 -65.04 REMARK 500 ASP B 160 -73.18 -53.29 REMARK 500 CYS B 197 -70.20 -80.07 REMARK 500 ARG B 210 -54.78 65.46 REMARK 500 ALA C 30 -8.53 85.75 REMARK 500 SER C 63 0.66 -57.86 REMARK 500 THR C 69 -167.40 -77.57 REMARK 500 ASP C 160 -74.00 -52.23 REMARK 500 LYS C 202 -9.75 -59.34 REMARK 500 ARG C 210 -50.77 65.95 REMARK 500 TYR D 51 -9.80 -48.71 REMARK 500 PHE D 64 35.44 -99.99 REMARK 500 ASP D 160 -75.02 -54.64 REMARK 500 ARG D 210 -44.06 65.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UDW RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A FEEDBACK-INHIBITOR, CTP. REMARK 900 RELATED ID: 1UEJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A SUBSTRATE, CYTIDINE. REMARK 900 RELATED ID: 1UEI RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A FEEDBACK-INHIBITOR, UTP. DBREF 1UFQ A 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 1UFQ B 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 1UFQ C 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 1UFQ D 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 SEQADV 1UFQ PRO A -1 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UFQ GLY A 0 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UFQ PRO B -1 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UFQ GLY B 0 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UFQ PRO C -1 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UFQ GLY C 0 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UFQ PRO D -1 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UFQ GLY D 0 UNP Q9BZX2 CLONING ARTIFACT SEQRES 1 A 252 PRO GLY MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN SEQRES 2 A 252 HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY SEQRES 3 A 252 VAL SER GLY GLY THR ALA SER GLY LYS SER SER VAL CYS SEQRES 4 A 252 ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP SEQRES 5 A 252 TYR ARG GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER SEQRES 6 A 252 PHE TYR ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA SEQRES 7 A 252 LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE SEQRES 8 A 252 ASP ASN GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR SEQRES 9 A 252 GLU GLY LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SEQRES 10 A 252 SER HIS SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO SEQRES 11 A 252 ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SEQRES 12 A 252 SER GLN GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE SEQRES 13 A 252 VAL ASP THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL SEQRES 14 A 252 LEU ARG ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN SEQRES 15 A 252 ILE LEU SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE SEQRES 16 A 252 GLU GLU PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL SEQRES 17 A 252 ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN SEQRES 18 A 252 LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY SEQRES 19 A 252 PRO SER LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR SEQRES 20 A 252 THR PRO SER ARG LYS SEQRES 1 B 252 PRO GLY MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN SEQRES 2 B 252 HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY SEQRES 3 B 252 VAL SER GLY GLY THR ALA SER GLY LYS SER SER VAL CYS SEQRES 4 B 252 ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP SEQRES 5 B 252 TYR ARG GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER SEQRES 6 B 252 PHE TYR ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA SEQRES 7 B 252 LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE SEQRES 8 B 252 ASP ASN GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR SEQRES 9 B 252 GLU GLY LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SEQRES 10 B 252 SER HIS SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO SEQRES 11 B 252 ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SEQRES 12 B 252 SER GLN GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE SEQRES 13 B 252 VAL ASP THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL SEQRES 14 B 252 LEU ARG ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN SEQRES 15 B 252 ILE LEU SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE SEQRES 16 B 252 GLU GLU PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL SEQRES 17 B 252 ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN SEQRES 18 B 252 LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY SEQRES 19 B 252 PRO SER LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR SEQRES 20 B 252 THR PRO SER ARG LYS SEQRES 1 C 252 PRO GLY MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN SEQRES 2 C 252 HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY SEQRES 3 C 252 VAL SER GLY GLY THR ALA SER GLY LYS SER SER VAL CYS SEQRES 4 C 252 ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP SEQRES 5 C 252 TYR ARG GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER SEQRES 6 C 252 PHE TYR ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA SEQRES 7 C 252 LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE SEQRES 8 C 252 ASP ASN GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR SEQRES 9 C 252 GLU GLY LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SEQRES 10 C 252 SER HIS SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO SEQRES 11 C 252 ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SEQRES 12 C 252 SER GLN GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE SEQRES 13 C 252 VAL ASP THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL SEQRES 14 C 252 LEU ARG ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN SEQRES 15 C 252 ILE LEU SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE SEQRES 16 C 252 GLU GLU PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL SEQRES 17 C 252 ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN SEQRES 18 C 252 LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY SEQRES 19 C 252 PRO SER LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR SEQRES 20 C 252 THR PRO SER ARG LYS SEQRES 1 D 252 PRO GLY MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN SEQRES 2 D 252 HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY SEQRES 3 D 252 VAL SER GLY GLY THR ALA SER GLY LYS SER SER VAL CYS SEQRES 4 D 252 ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP SEQRES 5 D 252 TYR ARG GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER SEQRES 6 D 252 PHE TYR ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA SEQRES 7 D 252 LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE SEQRES 8 D 252 ASP ASN GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR SEQRES 9 D 252 GLU GLY LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SEQRES 10 D 252 SER HIS SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO SEQRES 11 D 252 ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SEQRES 12 D 252 SER GLN GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE SEQRES 13 D 252 VAL ASP THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL SEQRES 14 D 252 LEU ARG ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN SEQRES 15 D 252 ILE LEU SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE SEQRES 16 D 252 GLU GLU PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL SEQRES 17 D 252 ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN SEQRES 18 D 252 LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY SEQRES 19 D 252 PRO SER LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR SEQRES 20 D 252 THR PRO SER ARG LYS FORMUL 5 HOH *130(H2 O) HELIX 1 1 GLY A 32 LEU A 44 1 13 HELIX 2 2 GLY A 45 VAL A 49 5 5 HELIX 3 3 ASP A 62 TYR A 65 5 4 HELIX 4 4 THR A 69 LYS A 78 1 10 HELIX 5 5 HIS A 85 PHE A 89 5 5 HELIX 6 6 ASP A 90 GLU A 103 1 14 HELIX 7 7 SER A 142 ASP A 147 1 6 HELIX 8 8 ASP A 158 ARG A 174 1 17 HELIX 9 9 ASP A 177 PHE A 188 1 12 HELIX 10 10 PHE A 188 CYS A 197 1 10 HELIX 11 11 LEU A 198 ALA A 204 5 7 HELIX 12 12 ASN A 214 LEU A 229 1 16 HELIX 13 13 GLY B 32 LEU B 43 1 12 HELIX 14 14 ASP B 62 TYR B 65 5 4 HELIX 15 15 THR B 69 LYS B 78 1 10 HELIX 16 16 HIS B 85 PHE B 89 5 5 HELIX 17 17 ASP B 90 GLU B 103 1 14 HELIX 18 18 SER B 142 ASP B 147 1 6 HELIX 19 19 ASP B 158 GLU B 173 1 16 HELIX 20 20 ASP B 177 PHE B 188 1 12 HELIX 21 21 PHE B 188 CYS B 197 1 10 HELIX 22 22 LEU B 198 ALA B 204 5 7 HELIX 23 23 ASN B 214 ASN B 230 1 17 HELIX 24 24 GLY C 32 LEU C 44 1 13 HELIX 25 25 GLY C 45 VAL C 49 5 5 HELIX 26 26 ASP C 62 TYR C 65 5 4 HELIX 27 27 THR C 69 LYS C 78 1 10 HELIX 28 28 HIS C 85 PHE C 89 5 5 HELIX 29 29 ASP C 90 GLU C 103 1 14 HELIX 30 30 SER C 142 ASP C 147 1 6 HELIX 31 31 ASP C 158 GLY C 175 1 18 HELIX 32 32 ASP C 177 PHE C 188 1 12 HELIX 33 33 PHE C 188 PHE C 196 1 9 HELIX 34 34 CYS C 197 ALA C 204 5 8 HELIX 35 35 ASN C 214 ASN C 230 1 17 HELIX 36 36 GLY D 32 LEU D 44 1 13 HELIX 37 37 GLY D 45 VAL D 49 5 5 HELIX 38 38 ASP D 62 TYR D 65 5 4 HELIX 39 39 THR D 69 GLY D 79 1 11 HELIX 40 40 HIS D 85 PHE D 89 5 5 HELIX 41 41 ASP D 90 GLU D 103 1 14 HELIX 42 42 SER D 142 PHE D 149 1 8 HELIX 43 43 ASP D 158 SER D 172 1 15 HELIX 44 44 ASP D 177 PHE D 188 1 12 HELIX 45 45 PHE D 188 PHE D 196 1 9 HELIX 46 46 CYS D 197 ALA D 204 5 8 HELIX 47 47 ASN D 214 LEU D 229 1 16 SHEET 1 A 5 VAL A 56 SER A 60 0 SHEET 2 A 5 VAL A 131 GLU A 135 1 O LEU A 133 N LEU A 59 SHEET 3 A 5 PHE A 21 SER A 26 1 N VAL A 25 O PHE A 134 SHEET 4 A 5 MET A 151 ASP A 156 1 O LEU A 153 N GLY A 24 SHEET 5 A 5 VAL A 206 PRO A 209 1 O VAL A 206 N PHE A 154 SHEET 1 B 2 VAL A 107 ILE A 109 0 SHEET 2 B 2 VAL A 124 VAL A 126 -1 O VAL A 126 N VAL A 107 SHEET 1 C 5 VAL B 56 SER B 60 0 SHEET 2 C 5 VAL B 131 GLU B 135 1 O LEU B 133 N LEU B 59 SHEET 3 C 5 PHE B 21 GLY B 27 1 N ILE B 23 O VAL B 132 SHEET 4 C 5 MET B 151 ASP B 156 1 O LEU B 153 N GLY B 24 SHEET 5 C 5 VAL B 206 PRO B 209 1 O ILE B 208 N PHE B 154 SHEET 1 D 2 VAL B 107 ASP B 113 0 SHEET 2 D 2 SER B 118 VAL B 126 -1 O VAL B 124 N ILE B 109 SHEET 1 E 5 VAL C 56 SER C 60 0 SHEET 2 E 5 VAL C 131 GLU C 135 1 O LEU C 133 N VAL C 57 SHEET 3 E 5 PHE C 21 GLY C 27 1 N VAL C 25 O PHE C 134 SHEET 4 E 5 MET C 151 ASP C 156 1 O LEU C 153 N GLY C 24 SHEET 5 E 5 VAL C 206 PRO C 209 1 O ILE C 208 N PHE C 154 SHEET 1 F 2 VAL C 107 ILE C 109 0 SHEET 2 F 2 VAL C 124 VAL C 126 -1 O VAL C 124 N ILE C 109 SHEET 1 G 2 TYR C 112 ASP C 113 0 SHEET 2 G 2 SER C 118 ARG C 119 -1 O SER C 118 N ASP C 113 SHEET 1 H 5 VAL D 56 SER D 60 0 SHEET 2 H 5 VAL D 131 GLU D 135 1 O LEU D 133 N LEU D 59 SHEET 3 H 5 PHE D 21 GLY D 27 1 N ILE D 23 O VAL D 132 SHEET 4 H 5 MET D 151 ASP D 156 1 O VAL D 155 N SER D 26 SHEET 5 H 5 VAL D 206 PRO D 209 1 O VAL D 206 N PHE D 154 SHEET 1 I 2 VAL D 107 ASP D 113 0 SHEET 2 I 2 SER D 118 VAL D 126 -1 O VAL D 124 N ILE D 109 CRYST1 84.057 94.262 156.989 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006370 0.00000