HEADER ENDOCYTOSIS/EXOCYTOSIS 29-MAY-03 1UFF TITLE SOLUTION STRUCTURE OF THE FIRST SH3 DOMAIN OF HUMAN INTERSECTIN2 TITLE 2 (KIAA1256) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERSECTIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HH15293; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021015-27; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA BARREL, SH3 DOMAIN, ENDOCYTOSIS, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ENDOCYTOSIS- KEYWDS 3 EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KOBAYASHI,T.KIGAWA,S.KOSHIBA,N.TOCHIO,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1UFF 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UFF 1 VERSN REVDAT 1 29-NOV-03 1UFF 0 JRNL AUTH N.KOBAYASHI,T.KIGAWA,S.KOSHIBA,N.TOCHIO,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST SH3 DOMAIN OF HUMAN JRNL TITL 2 INTERSECTIN2 (KIAA1256) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UFF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005766. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.54MM SH3 DOMAIN U-15N,13C, REMARK 210 20MM PHOSPHATE BUFFER NA, 100MM REMARK 210 NACL, 1MM D10-DTT, 0.02% NAN3, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.816, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 47 H ASN A 50 1.52 REMARK 500 O TYR A 8 H ILE A 30 1.55 REMARK 500 H PHE A 47 O ASN A 50 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 91.28 45.99 REMARK 500 1 SER A 5 163.54 56.76 REMARK 500 1 ALA A 16 89.75 -66.78 REMARK 500 1 ARG A 17 45.69 -102.15 REMARK 500 1 HIS A 19 -75.64 -78.59 REMARK 500 1 ASP A 20 56.70 -105.70 REMARK 500 1 GLN A 31 74.34 -68.48 REMARK 500 1 LYS A 35 -48.08 -148.43 REMARK 500 1 PRO A 40 -84.03 -75.00 REMARK 500 1 GLN A 48 110.55 -35.13 REMARK 500 1 ASN A 57 -60.20 173.69 REMARK 500 1 GLU A 66 73.18 41.60 REMARK 500 1 ASN A 67 153.28 60.64 REMARK 500 1 THR A 87 -171.23 45.67 REMARK 500 1 SER A 92 75.29 -150.29 REMARK 500 2 SER A 3 -57.55 -124.92 REMARK 500 2 SER A 6 -66.95 -159.18 REMARK 500 2 ARG A 17 35.24 -146.33 REMARK 500 2 ASN A 18 -65.07 -121.44 REMARK 500 2 HIS A 19 126.58 178.13 REMARK 500 2 ASP A 33 75.28 -109.43 REMARK 500 2 PRO A 40 -82.28 -75.01 REMARK 500 2 GLN A 48 109.53 -35.14 REMARK 500 2 CYS A 56 44.61 -90.82 REMARK 500 2 LYS A 61 97.91 -60.39 REMARK 500 2 SER A 64 -45.60 -133.20 REMARK 500 2 GLU A 66 -44.95 -154.12 REMARK 500 2 ALA A 70 103.06 -179.04 REMARK 500 2 SER A 92 169.21 177.49 REMARK 500 3 ALA A 16 109.32 -49.45 REMARK 500 3 HIS A 19 -158.09 71.63 REMARK 500 3 ASP A 20 48.96 -91.66 REMARK 500 3 GLU A 39 157.63 -48.04 REMARK 500 3 GLN A 48 110.54 -35.17 REMARK 500 3 CYS A 56 68.17 -69.56 REMARK 500 3 ASN A 57 -48.48 -150.55 REMARK 500 3 TYR A 58 46.41 -85.50 REMARK 500 3 LYS A 61 107.78 -47.11 REMARK 500 3 PRO A 63 -166.41 -75.07 REMARK 500 3 SER A 64 81.07 59.58 REMARK 500 3 SER A 65 87.12 -156.29 REMARK 500 3 GLU A 66 86.13 60.26 REMARK 500 3 GLU A 68 139.13 -174.78 REMARK 500 3 ALA A 70 62.95 -150.95 REMARK 500 3 LYS A 74 101.97 64.49 REMARK 500 3 THR A 81 119.94 -166.27 REMARK 500 3 SER A 83 127.62 -177.22 REMARK 500 3 THR A 87 146.74 -171.12 REMARK 500 4 PRO A 40 -81.84 -74.99 REMARK 500 4 GLN A 48 110.14 -34.99 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001230.3 RELATED DB: TARGETDB DBREF 1UFF A 8 88 UNP Q9NZM3 ITSN2_HUMAN 761 841 SEQADV 1UFF GLY A 1 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF SER A 2 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF SER A 3 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF GLY A 4 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF SER A 5 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF SER A 6 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF GLY A 7 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF GLY A 89 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF PRO A 90 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF SER A 91 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF SER A 92 UNP Q9NZM3 CLONING ARTIFACT SEQADV 1UFF GLY A 93 UNP Q9NZM3 CLONING ARTIFACT SEQRES 1 A 93 GLY SER SER GLY SER SER GLY TYR ARG ALA LEU TYR PRO SEQRES 2 A 93 PHE GLU ALA ARG ASN HIS ASP GLU MET SER PHE ASN SER SEQRES 3 A 93 GLY ASP ILE ILE GLN VAL ASP GLU LYS THR VAL GLY GLU SEQRES 4 A 93 PRO GLY TRP LEU TYR GLY SER PHE GLN GLY ASN PHE GLY SEQRES 5 A 93 TRP PHE PRO CYS ASN TYR VAL GLU LYS MET PRO SER SER SEQRES 6 A 93 GLU ASN GLU LYS ALA VAL SER PRO LYS LYS ALA LEU LEU SEQRES 7 A 93 PRO PRO THR VAL SER LEU SER ALA THR SER GLY PRO SER SEQRES 8 A 93 SER GLY SHEET 1 A 5 ASN A 50 PRO A 55 0 SHEET 2 A 5 TRP A 42 PHE A 47 -1 N PHE A 47 O ASN A 50 SHEET 3 A 5 ILE A 29 VAL A 32 -1 N GLN A 31 O SER A 46 SHEET 4 A 5 TYR A 8 ALA A 10 -1 N TYR A 8 O ILE A 30 SHEET 5 A 5 VAL A 59 LYS A 61 -1 O GLU A 60 N ARG A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20