HEADER LIGASE/RNA 13-JUL-04 1U0B TITLE CRYSTAL STRUCTURE OF CYSTEINYL-TRNA SYNTHETASE BINARY TITLE 2 COMPLEX WITH TRNACYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE--TRNA LIGASE, CYSRS; COMPND 5 EC: 6.1.1.16; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYSTEINYL TRNA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: TRNACYS; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK107; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: T7 TRANSCRIPTION KEYWDS PROTEIN-RNA COMPLEX, LIGASE/RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HAUENSTEIN,C.M.ZHANG,Y.M.HOU,J.J.PERONA REVDAT 2 24-FEB-09 1U0B 1 VERSN REVDAT 1 23-NOV-04 1U0B 0 JRNL AUTH S.HAUENSTEIN,C.M.ZHANG,Y.M.HOU,J.J.PERONA JRNL TITL SHAPE-SELECTIVE RNA RECOGNITION BY CYSTEINYL-TRNA JRNL TITL 2 SYNTHETASE JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 1134 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 15489861 JRNL DOI 10.1038/NSMB849 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 31401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1578 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3264 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 179 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3518 REMARK 3 NUCLEIC ACID ATOMS : 1576 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.56000 REMARK 3 B22 (A**2) : -7.56000 REMARK 3 B33 (A**2) : 15.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 37.32 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U0B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-04. REMARK 100 THE RCSB ID CODE IS RCSB023085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.00 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1LI5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 1000, HEPES, REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.51000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.74500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.75500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.26500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.75500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.26500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.51000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 ILE B 75 CG1 CG2 CD1 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 161 CG OD1 OD2 REMARK 470 GLN B 162 CG CD OE1 NE2 REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 VAL B 171 CG1 CG2 REMARK 470 VAL B 172 CG1 CG2 REMARK 470 ASP B 173 CG OD1 OD2 REMARK 470 ASP B 174 CG OD1 OD2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 HIS B 246 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 263 CG OD1 OD2 REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 SER B 268 OG REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 SER B 270 OG REMARK 470 LEU B 271 CG CD1 CD2 REMARK 470 ASN B 273 CG OD1 ND2 REMARK 470 ASP B 279 CG OD1 OD2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 ASN B 303 CG OD1 ND2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 GLN B 407 CG CD OE1 NE2 REMARK 470 ASP B 409 CG OD1 OD2 REMARK 470 ASP B 410 CG OD1 OD2 REMARK 470 VAL B 413 CG1 CG2 REMARK 470 GLU B 415 CG CD OE1 OE2 REMARK 470 ILE B 420 CG1 CG2 CD1 REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 LYS B 430 CG CD CE NZ REMARK 470 ARG B 441 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 444 CG CD OE1 OE2 REMARK 470 GLN B 454 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C A 75 OP1 A A 76 2.06 REMARK 500 O2' U A 60 OP1 C A 61 2.10 REMARK 500 O TRP B 205 O HOH B 463 2.13 REMARK 500 O2' A A 58 O5' C A 59 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 170 -111.86 -106.67 REMARK 500 ASP B 174 55.56 -103.32 REMARK 500 GLU B 189 -43.95 64.40 REMARK 500 PRO B 203 -70.46 -42.54 REMARK 500 HIS B 206 -40.65 78.53 REMARK 500 TYR B 250 -68.86 -108.23 REMARK 500 ARG B 264 -11.73 62.77 REMARK 500 GLU B 372 -65.41 -124.58 REMARK 500 ALA B 408 -5.86 61.02 REMARK 500 GLU B 417 16.04 -69.51 REMARK 500 PRO B 453 -98.84 -46.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U A 60 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 462 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 209 SG REMARK 620 2 GLU B 238 OE2 110.1 REMARK 620 3 HIS B 234 NE2 131.9 80.5 REMARK 620 4 CYS B 28 SG 129.0 90.8 96.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 462 DBREF 1U0B B 1 461 UNP P21888 SYC_ECOLI 1 461 DBREF 1U0B A 1 76 PDB 1U0B 1U0B 1 76 SEQRES 1 A 74 G G C G C G U U A A C A A SEQRES 2 A 74 A G C G G U U A U G U A G SEQRES 3 A 74 C G G A U U G C A A A U C SEQRES 4 A 74 C G U C U A G U C C G G U SEQRES 5 A 74 U C G A C U C C G G A A C SEQRES 6 A 74 G C G C C U C C A SEQRES 1 B 461 MET LEU LYS ILE PHE ASN THR LEU THR ARG GLN LYS GLU SEQRES 2 B 461 GLU PHE LYS PRO ILE HIS ALA GLY GLU VAL GLY MET TYR SEQRES 3 B 461 VAL CYS GLY ILE THR VAL TYR ASP LEU CYS HIS ILE GLY SEQRES 4 B 461 HIS GLY ARG THR PHE VAL ALA PHE ASP VAL VAL ALA ARG SEQRES 5 B 461 TYR LEU ARG PHE LEU GLY TYR LYS LEU LYS TYR VAL ARG SEQRES 6 B 461 ASN ILE THR ASP ILE ASP ASP LYS ILE ILE LYS ARG ALA SEQRES 7 B 461 ASN GLU ASN GLY GLU SER PHE VAL ALA MET VAL ASP ARG SEQRES 8 B 461 MET ILE ALA GLU MET HIS LYS ASP PHE ASP ALA LEU ASN SEQRES 9 B 461 ILE LEU ARG PRO ASP MET GLU PRO ARG ALA THR HIS HIS SEQRES 10 B 461 ILE ALA GLU ILE ILE GLU LEU THR GLU GLN LEU ILE ALA SEQRES 11 B 461 LYS GLY HIS ALA TYR VAL ALA ASP ASN GLY ASP VAL MET SEQRES 12 B 461 PHE ASP VAL PRO THR ASP PRO THR TYR GLY VAL LEU SER SEQRES 13 B 461 ARG GLN ASP LEU ASP GLN LEU GLN ALA GLY ALA ARG VAL SEQRES 14 B 461 ASP VAL VAL ASP ASP LYS ARG ASN PRO MET ASP PHE VAL SEQRES 15 B 461 LEU TRP LYS MET SER LYS GLU GLY GLU PRO SER TRP PRO SEQRES 16 B 461 SER PRO TRP GLY ALA GLY ARG PRO GLY TRP HIS ILE GLU SEQRES 17 B 461 CYS SER ALA MET ASN CYS LYS GLN LEU GLY ASN HIS PHE SEQRES 18 B 461 ASP ILE HIS GLY GLY GLY SER ASP LEU MET PHE PRO HIS SEQRES 19 B 461 HIS GLU ASN GLU ILE ALA GLN SER THR CYS ALA HIS ASP SEQRES 20 B 461 GLY GLN TYR VAL ASN TYR TRP MET HIS SER GLY MET VAL SEQRES 21 B 461 MET VAL ASP ARG GLU LYS MET SER LYS SER LEU GLY ASN SEQRES 22 B 461 PHE PHE THR VAL ARG ASP VAL LEU LYS TYR TYR ASP ALA SEQRES 23 B 461 GLU THR VAL ARG TYR PHE LEU MET SER GLY HIS TYR ARG SEQRES 24 B 461 SER GLN LEU ASN TYR SER GLU GLU ASN LEU LYS GLN ALA SEQRES 25 B 461 ARG ALA ALA LEU GLU ARG LEU TYR THR ALA LEU ARG GLY SEQRES 26 B 461 THR ASP LYS THR VAL ALA PRO ALA GLY GLY GLU ALA PHE SEQRES 27 B 461 GLU ALA ARG PHE ILE GLU ALA MET ASP ASP ASP PHE ASN SEQRES 28 B 461 THR PRO GLU ALA TYR SER VAL LEU PHE ASP MET ALA ARG SEQRES 29 B 461 GLU VAL ASN ARG LEU LYS ALA GLU ASP MET ALA ALA ALA SEQRES 30 B 461 ASN ALA MET ALA SER HIS LEU ARG LYS LEU SER ALA VAL SEQRES 31 B 461 LEU GLY LEU LEU GLU GLN GLU PRO GLU ALA PHE LEU GLN SEQRES 32 B 461 SER GLY ALA GLN ALA ASP ASP SER GLU VAL ALA GLU ILE SEQRES 33 B 461 GLU ALA LEU ILE GLN GLN ARG LEU ASP ALA ARG LYS ALA SEQRES 34 B 461 LYS ASP TRP ALA ALA ALA ASP ALA ALA ARG ASP ARG LEU SEQRES 35 B 461 ASN GLU MET GLY ILE VAL LEU GLU ASP GLY PRO GLN GLY SEQRES 36 B 461 THR THR TRP ARG ARG LYS HET ZN B 462 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *104(H2 O) HELIX 1 1 HIS B 37 LEU B 57 1 21 HELIX 2 2 ASP B 71 GLY B 82 1 12 HELIX 3 3 SER B 84 LEU B 103 1 20 HELIX 4 4 HIS B 117 LYS B 131 1 15 HELIX 5 5 VAL B 146 ASP B 149 5 4 HELIX 6 6 ASP B 159 GLY B 166 1 8 HELIX 7 7 HIS B 206 GLY B 218 1 13 HELIX 8 8 ASP B 229 MET B 231 5 3 HELIX 9 9 PRO B 233 HIS B 246 1 14 HELIX 10 10 THR B 276 LEU B 281 1 6 HELIX 11 11 ASP B 285 MET B 294 1 10 HELIX 12 12 SER B 305 ARG B 324 1 20 HELIX 13 13 GLY B 335 ASP B 348 1 14 HELIX 14 14 ASN B 351 ALA B 371 1 21 HELIX 15 15 ASP B 373 VAL B 390 1 18 HELIX 16 16 GLU B 397 GLN B 403 1 7 HELIX 17 17 GLU B 412 GLU B 417 1 6 HELIX 18 18 ALA B 418 ALA B 429 1 12 HELIX 19 19 ASP B 431 MET B 445 1 15 SHEET 1 A 2 LYS B 3 PHE B 5 0 SHEET 2 A 2 LYS B 12 GLU B 14 -1 O GLU B 13 N ILE B 4 SHEET 1 B 4 LYS B 60 ARG B 65 0 SHEET 2 B 4 GLU B 22 VAL B 27 1 N MET B 25 O VAL B 64 SHEET 3 B 4 PHE B 221 GLY B 227 1 O GLY B 225 N TYR B 26 SHEET 4 B 4 VAL B 251 SER B 257 1 O TYR B 253 N ASP B 222 SHEET 1 C 4 ALA B 134 VAL B 136 0 SHEET 2 C 4 VAL B 142 PHE B 144 -1 O MET B 143 N TYR B 135 SHEET 3 C 4 PHE B 181 MET B 186 -1 O LEU B 183 N VAL B 142 SHEET 4 C 4 GLY B 201 ARG B 202 -1 O ARG B 202 N LYS B 185 SHEET 1 D 3 GLU B 265 LYS B 266 0 SHEET 2 D 3 VAL B 260 VAL B 262 -1 N VAL B 262 O GLU B 265 SHEET 3 D 3 LEU B 302 ASN B 303 1 O LEU B 302 N MET B 261 SHEET 1 E 2 ILE B 447 ASP B 451 0 SHEET 2 E 2 THR B 456 ARG B 460 -1 O THR B 457 N GLU B 450 LINK ZN ZN B 462 SG CYS B 209 1555 1555 2.38 LINK ZN ZN B 462 OE2 GLU B 238 1555 1555 2.21 LINK ZN ZN B 462 NE2 HIS B 234 1555 1555 1.89 LINK ZN ZN B 462 SG CYS B 28 1555 1555 2.23 CISPEP 1 PHE B 232 PRO B 233 0 4.64 SITE 1 AC1 4 CYS B 28 CYS B 209 HIS B 234 GLU B 238 CRYST1 129.490 129.490 91.020 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007723 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010987 0.00000