HEADER COMPLEX (ANTIBODY/PEPTIDE EPITOPE) 23-DEC-97 1SM3 TITLE CRYSTAL STRUCTURE OF THE TUMOR SPECIFIC ANTIBODY SM3 TITLE 2 COMPLEX WITH ITS PEPTIDE EPITOPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SM3 ANTIBODY; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB FRAGMENT; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SM3 ANTIBODY; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: FAB FRAGMENT; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PEPTIDE EPITOPE; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: ANTI-BREAST TUMOUR ANTIBODY SM3 AGAINST COMPND 14 EPITHELIAL MUCIN MUC1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 ORGAN: BREAST; SOURCE 6 TISSUE: EPITHELIAL; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 ORGAN: BREAST; SOURCE 12 TISSUE: EPITHELIAL; SOURCE 13 MOL_ID: 3 KEYWDS ANTIBODY, PEPTIDE ANTIGEN, ANTITUMOR ANTIBODY, COMPLEX KEYWDS 2 (ANTIBODY/PEPTIDE EPITOPE) EXPDTA X-RAY DIFFRACTION AUTHOR P.DOKURNO,P.A.BATES,H.A.BAND,L.M.D.STEWART,J.M.LALLY, AUTHOR 2 J.M.BURCHELL,J.TAYLOR-PAPADIMITRIOU,M.J.E.STERNBERG,D.SNARY, AUTHOR 3 P.S.FREEMONT REVDAT 3 24-FEB-09 1SM3 1 VERSN REVDAT 2 01-APR-03 1SM3 1 JRNL REVDAT 1 23-MAR-99 1SM3 0 JRNL AUTH P.DOKURNO,P.A.BATES,H.A.BAND,L.M.STEWART,J.M.LALLY, JRNL AUTH 2 J.M.BURCHELL,J.TAYLOR-PAPADIMITRIOU,D.SNARY, JRNL AUTH 3 M.J.STERNBERG,P.S.FREEMONT JRNL TITL CRYSTAL STRUCTURE AT 1.95 A RESOLUTION OF THE JRNL TITL 2 BREAST TUMOUR-SPECIFIC ANTIBODY SM3 COMPLEXED WITH JRNL TITL 3 ITS PEPTIDE EPITOPE REVEALS NOVEL HYPERVARIABLE JRNL TITL 4 LOOP RECOGNITION. JRNL REF J.MOL.BIOL. V. 284 713 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9826510 JRNL DOI 10.1006/JMBI.1998.2209 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.DOKURNO,J.M.LALLY,P.A.BATES, REMARK 1 AUTH 2 J.TAYLOR-PAPADIMITRIOU,H.A.BAND,D.SNARY, REMARK 1 AUTH 3 P.S.FREEMONT REMARK 1 TITL CRYSTALLIZATION OF AN ANTITUMOUR ANTIBODY SM3 REMARK 1 TITL 2 COMPLEXED WITH A PEPTIDE EPITOPE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 53 780 1997 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0100 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 28735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2809 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.36 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : UNRESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 3 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TOPOLOGY AND PARAMETERS FILES WERE REMARK 3 ALTERED TO ALLOW THE CIS-GLN REMARK 4 REMARK 4 1SM3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.912 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : AGROVATA, CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : 0.25400 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: PDB ENTRY 1MFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.86500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP L 2 REMARK 465 ALA L 209 REMARK 465 ASP L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 SER H 128 REMARK 465 ASN H 129 REMARK 465 ALA H 130 REMARK 465 ALA H 131 REMARK 465 SER H 132 REMARK 465 GLN H 133 REMARK 465 ASP H 214 REMARK 465 THR P 1 REMARK 465 GLY P 11 REMARK 465 SER P 12 REMARK 465 THR P 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP L 41 CG OD1 OD2 REMARK 470 GLU L 123 CG CD OE1 OE2 REMARK 470 GLN L 163 CG CD OE1 NE2 REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 GLU H 42 CG CD OE1 OE2 REMARK 470 GLU H 61 CG CD OE1 OE2 REMARK 470 GLU H 85 CG CD OE1 OE2 REMARK 470 SER H 134 OG REMARK 470 SER H 172 OG REMARK 470 ASP H 173 CG OD1 OD2 REMARK 470 SER H 203 OG REMARK 470 SER P 2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER H 74 CA SER H 74 CB 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 52 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG H 66 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 VAL H 181 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR L 32 54.77 30.76 REMARK 500 PRO L 40 121.90 -36.40 REMARK 500 ASP L 41 27.80 104.48 REMARK 500 THR L 51 -50.90 71.23 REMARK 500 ASN L 52 17.96 -148.56 REMARK 500 ALA L 84 -179.98 -178.53 REMARK 500 SER L 93 -46.95 69.01 REMARK 500 ASN L 94 20.95 -155.91 REMARK 500 LEU L 106A 106.01 -41.78 REMARK 500 ARG H 52 -159.11 -88.71 REMARK 500 VAL H 95 101.98 78.36 REMARK 500 PHE H 98 47.78 -144.93 REMARK 500 PHE H 146 134.59 -174.39 REMARK 500 SER H 172 34.89 90.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR L 86 0.07 SIDE_CHAIN REMARK 500 TYR H 79 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 303 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH H 374 DISTANCE = 5.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD H 215 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 164 NE2 REMARK 620 2 HOH L 346 O 81.5 REMARK 620 3 HOH H 314 O 102.6 152.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD H 216 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL H 219 CL REMARK 620 2 GLU H 191 OE2 152.7 REMARK 620 3 HOH H 308 O 94.3 86.9 REMARK 620 4 HOH H 285 O 83.4 92.3 173.3 REMARK 620 5 GLU H 191 OE1 100.3 53.1 102.7 71.7 REMARK 620 6 HIS L 188 NE2 103.4 103.7 95.4 91.2 148.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD H 217 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL H 220 CL REMARK 620 2 HOH H 348 O 177.2 REMARK 620 3 HOH H 373 O 98.3 83.9 REMARK 620 4 HIS H 58 NE2 89.3 91.0 123.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD H 218 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H 288 O REMARK 620 2 HOH H 289 O 144.7 REMARK 620 3 HOH H 318 O 65.7 79.5 REMARK 620 4 GLU L 126 OE1 130.3 77.0 130.1 REMARK 620 5 GLU L 126 OE2 92.8 92.2 88.9 49.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD L 213 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 232 O REMARK 620 2 HIS L 42 NE2 88.3 REMARK 620 3 HOH L 292 O 107.5 87.6 REMARK 620 4 HOH L 290 O 87.4 90.0 164.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD L 214 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 197 ND1 REMARK 620 2 HOH L 249 O 101.7 REMARK 620 3 HIS L 200 ND1 173.8 84.3 REMARK 620 4 HIS L 197 O 87.2 91.0 91.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD L 215 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 282 O REMARK 620 2 HOH L 266 O 91.2 REMARK 620 3 HOH L 237 O 84.4 174.6 REMARK 620 4 ASN L 52 OD1 83.1 106.4 76.2 REMARK 620 5 HOH L 255 O 100.2 107.5 70.4 145.8 REMARK 620 6 HOH L 218 O 171.2 80.1 104.3 100.2 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD L 216 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 160 OE1 REMARK 620 2 HOH L 321 O 103.1 REMARK 620 3 HOH L 271 O 95.3 78.4 REMARK 620 4 HOH L 242 O 86.2 121.5 159.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD H 215 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD L 213 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD H 216 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD H 217 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD H 218 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD L 214 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD L 215 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD L 216 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL H 219 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL H 220 DBREF 1SM3 L 4 212 UNP P01723 LV1A_MOUSE 22 234 DBREF 1SM3 H 2 214 UNP P01801 HV32_MOUSE 2 220 DBREF 1SM3 P 1 13 UNP P15941 MUC1_HUMAN 139 151 SEQADV 1SM3 SER L 108 UNP P01723 GLN 130 CONFLICT SEQADV 1SM3 GLU L 109 UNP P01723 PRO 131 CONFLICT SEQADV 1SM3 GLN H 3 UNP P01801 LYS 3 CONFLICT SEQADV 1SM3 GLN H 5 UNP P01801 GLU 5 CONFLICT SEQADV 1SM3 LEU H 20 UNP P01801 VAL 20 CONFLICT SEQADV 1SM3 THR H 28 UNP P01801 ALA 28 CONFLICT SEQADV 1SM3 ASN H 31 UNP P01801 TYR 31 CONFLICT SEQADV 1SM3 LYS H 43 UNP P01801 ARG 43 CONFLICT SEQADV 1SM3 VAL H 48 UNP P01801 ILE 48 CONFLICT SEQADV 1SM3 LEU H 52A UNP P01801 PHE 53 CONFLICT SEQADV 1SM3 ALA H 56 UNP P01801 INSERTION SEQADV 1SM3 GLY H 94 UNP P01801 ARG 99 CONFLICT SEQADV 1SM3 VAL H 95 UNP P01801 GLU 100 CONFLICT SEQADV 1SM3 H UNP P01801 ILE 102 DELETION SEQADV 1SM3 H UNP P01801 TYR 103 DELETION SEQADV 1SM3 H UNP P01801 TYR 104 DELETION SEQADV 1SM3 GLN H 97 UNP P01801 PRO 105 CONFLICT SEQADV 1SM3 THR H 108 UNP P01801 LEU 114 CONFLICT SEQADV 1SM3 SER H 113 UNP P01801 ALA 119 CONFLICT SEQADV 1SM3 THR H 120 UNP P01801 SER 126 CONFLICT SEQADV 1SM3 ASN H 129 UNP P01801 ALA 135 CONFLICT SEQADV 1SM3 ALA H 131 UNP P01801 GLN 137 CONFLICT SEQADV 1SM3 SER H 132 UNP P01801 THR 138 CONFLICT SEQADV 1SM3 GLN H 133 UNP P01801 ASN 139 CONFLICT SEQADV 1SM3 ALA H 160 UNP P01801 SER 166 CONFLICT SEQADV 1SM3 ALA H 208 UNP P01801 LYS 214 CONFLICT SEQRES 1 L 215 ASP ILE VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 215 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 215 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 215 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 L 215 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 215 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE THR SEQRES 7 L 215 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 L 215 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU GLY SER GLU LYS SER SER PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 L 215 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 L 215 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 L 215 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 L 215 LEU SER ARG ALA ASP CYS SER SEQRES 1 H 218 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 218 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER GLY SEQRES 3 H 218 PHE THR PHE SER ASN TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 218 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 H 218 LEU LYS SER ASN ASN TYR ALA THR HIS TYR ALA GLU SER SEQRES 6 H 218 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 218 SER SER VAL TYR LEU GLN MET ASN ASN LEU ARG ALA GLU SEQRES 8 H 218 ASP THR GLY ILE TYR TYR CYS THR GLY VAL GLY GLN PHE SEQRES 9 H 218 ALA TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 H 218 ALA LYS THR THR PRO PRO THR VAL TYR PRO LEU ALA PRO SEQRES 11 H 218 GLY SER ASN ALA ALA SER GLN SER MET VAL THR LEU GLY SEQRES 12 H 218 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 218 THR TRP ASN SER GLY SER LEU ALA SER GLY VAL HIS THR SEQRES 14 H 218 PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SEQRES 15 H 218 SER SER VAL THR VAL PRO SER SER THR TRP PRO SER GLU SEQRES 16 H 218 THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 218 LYS VAL ASP ALA LYS ILE VAL PRO ARG ASP SEQRES 1 P 13 THR SER ALA PRO ASP THR ARG PRO ALA PRO GLY SER THR HET CD H 215 1 HET CD L 213 1 HET CD H 216 1 HET CD H 217 1 HET CD H 218 1 HET CD L 214 1 HET CD L 215 1 HET CD L 216 1 HET CL H 219 1 HET CL H 220 1 HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 4 CD 8(CD 2+) FORMUL 12 CL 2(CL 1-) FORMUL 14 HOH *331(H2 O) HELIX 1 1 THR L 29 ASN L 31 5 3 HELIX 2 2 THR L 80 ASP L 82 5 3 HELIX 3 3 SER L 122 THR L 127 1 6 HELIX 4 4 ALA L 182 ARG L 187 1 6 HELIX 5 5 PHE H 29 ASN H 31 5 3 HELIX 6 6 LYS H 52B ASN H 53 5 3 HELIX 7 7 ASP H 73 LYS H 75 5 3 HELIX 8 8 ALA H 84 ASP H 86 5 3 HELIX 9 9 ASN H 155 GLY H 157 5 3 HELIX 10 10 SER H 185 THR H 187 5 3 HELIX 11 11 PRO H 200 SER H 202 5 3 SHEET 1 A 4 VAL L 5 GLN L 7 0 SHEET 2 A 4 VAL L 19 SER L 25 -1 N ARG L 24 O THR L 6 SHEET 3 A 4 LYS L 70 ILE L 75 -1 N ILE L 75 O VAL L 19 SHEET 4 A 4 PHE L 62 ILE L 67 -1 N ILE L 67 O LYS L 70 SHEET 1 B 5 ALA L 10 SER L 14 0 SHEET 2 B 5 THR L 102 LEU L 106A 1 N LYS L 103 O LEU L 11 SHEET 3 B 5 ALA L 84 ALA L 89 -1 N TYR L 86 O THR L 102 SHEET 4 B 5 ASN L 34 LYS L 39 -1 N GLU L 38 O ILE L 85 SHEET 5 B 5 LEU L 43 ILE L 48 -1 N ILE L 48 O TRP L 35 SHEET 1 C 2 ALA L 89 TRP L 91 0 SHEET 2 C 2 TRP L 96 PHE L 98 -1 N VAL L 97 O LEU L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 LYS L 129 THR L 137 -1 N THR L 137 O SER L 114 SHEET 3 D 4 ALA L 174 THR L 181 -1 N LEU L 180 O ALA L 130 SHEET 4 D 4 MET L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 E 3 THR L 145 VAL L 150 0 SHEET 2 E 3 SER L 190 HIS L 197 -1 N THR L 196 O THR L 145 SHEET 3 E 3 HIS L 200 SER L 207 -1 N LEU L 206 O TYR L 191 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 MET H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 F 4 SER H 77 MET H 82 -1 N MET H 82 O MET H 18 SHEET 4 F 4 PHE H 67 ASP H 72 -1 N ASP H 72 O SER H 77 SHEET 1 G 5 THR H 107 VAL H 109 0 SHEET 2 G 5 GLY H 88 GLY H 94 -1 N TYR H 90 O THR H 107 SHEET 3 G 5 MET H 34 SER H 40 -1 N GLN H 39 O ILE H 89 SHEET 4 G 5 GLY H 44 ILE H 51 -1 N ILE H 51 O MET H 34 SHEET 5 G 5 THR H 57 TYR H 59 -1 N HIS H 58 O GLU H 50 SHEET 1 H 4 THR H 120 LEU H 124 0 SHEET 2 H 4 MET H 135 LYS H 143 -1 N LYS H 143 O THR H 120 SHEET 3 H 4 LEU H 177 PRO H 184 -1 N VAL H 183 O VAL H 136 SHEET 4 H 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 I 3 THR H 151 TRP H 154 0 SHEET 2 I 3 VAL H 193 HIS H 199 -1 N ALA H 198 O THR H 151 SHEET 3 I 3 THR H 204 ILE H 210 -1 N ILE H 210 O VAL H 193 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.21 SSBOND 2 CYS L 134 CYS L 193 1555 1555 2.18 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.25 SSBOND 4 CYS H 140 CYS H 195 1555 1555 2.24 LINK CD CD H 215 NE2 HIS H 164 1555 1555 2.79 LINK CD CD H 215 O HOH L 346 1555 1555 2.50 LINK CD CD H 215 O HOH H 314 1555 1555 2.64 LINK CD CD H 216 CL CL H 219 1555 1555 2.62 LINK CD CD H 216 OE2 GLU H 191 1555 1555 2.53 LINK CD CD H 216 O HOH H 308 1555 1555 2.13 LINK CD CD H 216 O HOH H 285 1555 1555 2.11 LINK CD CD H 216 OE1 GLU H 191 1555 1555 2.37 LINK CD CD H 217 CL CL H 220 1555 1555 2.45 LINK CD CD H 217 O HOH H 348 1555 1555 2.31 LINK CD CD H 217 O HOH H 373 1555 1555 1.97 LINK CD CD H 217 NE2 HIS H 58 1555 1555 2.56 LINK CD CD H 218 O HOH H 288 1555 1555 2.34 LINK CD CD H 218 O HOH H 289 1555 1555 2.99 LINK CD CD H 218 O HOH H 318 1555 1555 2.61 LINK CD CD L 213 O HOH L 232 1555 1555 2.30 LINK CD CD L 213 NE2 HIS L 42 1555 1555 2.82 LINK CD CD L 213 O HOH L 292 1555 1555 2.24 LINK CD CD L 213 O HOH L 290 1555 1555 2.24 LINK CD CD L 214 ND1 HIS L 197 1555 1555 2.79 LINK CD CD L 214 O HOH L 249 1555 1555 2.68 LINK CD CD L 214 ND1 HIS L 200 1555 1555 3.05 LINK CD CD L 214 O HIS L 197 1555 1555 2.19 LINK CD CD L 215 O HOH L 282 1555 1555 2.57 LINK CD CD L 215 O HOH L 266 1555 1555 2.24 LINK CD CD L 215 O HOH L 237 1555 1555 2.24 LINK CD CD L 215 OD1 ASN L 52 1555 1555 2.40 LINK CD CD L 216 OE1 GLU L 160 1555 1555 2.53 LINK CD CD L 216 O HOH L 321 1555 1555 2.30 LINK CD CD L 216 O HOH L 271 1555 1555 2.13 LINK CD CD L 216 O HOH L 242 1555 1555 2.17 LINK CD CD H 216 NE2 HIS L 188 1555 1455 2.51 LINK CD CD H 218 OE1 GLU L 126 1555 1554 2.53 LINK CD CD H 218 OE2 GLU L 126 1555 1554 2.74 LINK CD CD L 215 O HOH L 255 1555 1554 2.30 LINK CD CD L 215 O HOH L 218 1555 1554 2.25 CISPEP 1 TYR L 140 PRO L 141 0 0.47 CISPEP 2 GLY H 96 GLN H 97 0 -7.14 CISPEP 3 PHE H 146 PRO H 147 0 -1.77 CISPEP 4 GLU H 148 PRO H 149 0 -1.81 CISPEP 5 TRP H 188 PRO H 189 0 1.26 SITE 1 AC1 3 HIS H 164 HOH H 314 HOH L 346 SITE 1 AC2 4 HIS L 42 HOH L 232 HOH L 290 HOH L 292 SITE 1 AC3 5 GLU H 191 CL H 219 HOH H 285 HOH H 308 SITE 2 AC3 5 HIS L 188 SITE 1 AC4 4 HIS H 58 CL H 220 HOH H 348 HOH H 373 SITE 1 AC5 4 HOH H 288 HOH H 289 HOH H 318 GLU L 126 SITE 1 AC6 4 SER L 112 HIS L 197 HIS L 200 HOH L 249 SITE 1 AC7 6 ASN L 52 HOH L 218 HOH L 237 HOH L 255 SITE 2 AC7 6 HOH L 266 HOH L 282 SITE 1 AC8 4 GLU L 160 HOH L 242 HOH L 271 HOH L 321 SITE 1 AC9 2 CD H 216 ARG L 187 SITE 1 BC1 2 HIS H 58 CD H 217 CRYST1 42.200 83.730 67.240 90.00 93.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023697 0.000000 0.001366 0.00000 SCALE2 0.000000 0.011943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014897 0.00000